genome.fa.s9592.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009592.1 Hibiscus syriacus cultivar Beakdansim tig00116971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7920512

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   

This is table  34  of  39  ( 4673 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6761937--6762116	65	2.8	63	81	7	202	30	24	17	27	1.97
6769449--6769492	21	2.1	21	82	0	52	9	43	15	31	1.79
6770035--6770082	2	24.0	2	100	0	96	50	0	0	50	1.00
6770577--6770663	46	1.9	45	84	11	115	32	18	20	28	1.96
6772103--6772273	20	8.6	20	69	12	102	28	14	24	32	1.94
6772103--6772151	19	2.6	19	87	6	64	28	12	22	36	1.90
6772166--6772208	21	2.1	20	86	4	59	37	16	23	23	1.94
6772336--6772378	21	2.0	21	100	0	86	13	18	13	53	1.73
6772559--6772612	21	2.6	21	100	0	108	16	18	22	42	1.89
6772655--6772724	19	3.7	19	88	3	97	35	21	11	31	1.89
6772475--6772724	20	12.6	20	77	10	106	30	23	16	29	1.96
6773629--6773682	24	2.2	24	90	0	81	22	18	20	38	1.93
6773674--6773738	34	1.9	34	100	0	130	38	4	30	26	1.76
6773754--6773809	24	2.3	24	100	0	112	35	10	12	41	1.78
6775469--6775504	18	2.0	18	94	0	63	55	25	2	16	1.55
6775790--6775907	54	2.2	54	85	0	155	39	21	20	18	1.92
6775848--6775954	34	3.1	34	97	0	196	39	19	23	17	1.92
6776057--6776106	25	2.0	25	96	0	91	26	8	22	44	1.80
6776474--6776528	24	2.3	25	81	9	69	32	5	14	47	1.67
6776493--6776529	18	2.1	18	89	0	56	32	5	10	51	1.60
6776485--6776537	24	2.2	24	86	0	70	35	3	13	47	1.61
6776839--6776925	39	2.2	39	97	0	165	47	20	14	17	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6777099--6777161	20	3.2	20	93	0	108	44	25	15	14	1.84
6777202--6777239	20	1.9	20	88	0	58	18	15	23	42	1.89
6777805--6777836	6	5.3	6	96	0	55	21	0	62	15	1.32
6779464--6779491	13	2.2	13	100	0	56	78	14	7	0	0.95
6779865--6779945	20	4.1	20	73	17	87	18	16	23	41	1.89
6779865--6779989	60	2.1	60	82	8	148	21	13	25	39	1.90
6779911--6779981	20	3.5	20	72	12	65	23	14	28	33	1.94
6780242--6780301	23	2.6	22	81	5	57	43	8	16	31	1.78
6780223--6780463	87	2.8	87	91	0	410	42	9	15	32	1.79
6780342--6780386	23	2.0	23	86	0	63	42	6	15	35	1.73
6780476--6781144	198	3.4	199	87	2	927	31	16	13	38	1.88
6781245--6781329	30	2.8	31	80	15	83	48	1	1	49	1.16
6781256--6781341	14	6.2	14	69	11	52	47	1	1	50	1.16
6781356--6781424	24	2.9	25	79	18	76	43	1	2	52	1.25
6781495--6781549	2	27.5	2	100	0	110	49	0	0	50	1.00
6782124--6782168	14	3.1	15	84	6	58	55	2	0	42	1.12
6782160--6782228	24	2.9	25	79	18	76	43	1	2	52	1.25
6782534--6782584	23	2.2	23	89	0	75	33	19	9	37	1.85
6782470--6782680	87	2.4	87	91	1	343	32	15	9	42	1.79
6782621--6782686	23	2.9	23	90	0	105	36	19	6	37	1.77
6782534--6782769	110	2.1	110	91	0	373	33	15	9	41	1.80
6784455--6784515	31	2.0	31	83	6	79	27	29	9	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6791066--6791106	18	2.3	18	91	4	66	63	2	4	29	1.28
6794398--6794541	77	1.9	78	94	1	254	22	20	14	41	1.89
6794605--6794671	35	1.9	35	90	6	109	28	20	19	31	1.97
6795226--6795294	35	2.0	35	88	5	104	28	18	18	33	1.95
6794388--6795631	622	2.0	621	94	0	2191	24	18	22	35	1.95
6801171--6801244	33	2.2	33	92	0	121	56	14	13	14	1.67
6802489--6802605	42	2.8	41	88	5	164	17	17	16	49	1.80
6802789--6802848	32	1.9	31	83	10	77	45	0	1	53	1.10
6802894--6802957	28	2.2	28	86	8	85	51	0	1	46	1.10
6802915--6802967	20	2.7	19	73	18	54	49	0	1	49	1.12
6802808--6802968	60	2.7	60	77	14	154	49	0	1	48	1.13
6803348--6803391	15	3.0	15	76	6	54	34	18	6	40	1.77
6808530--6808604	35	2.1	35	100	0	150	58	10	13	17	1.62
6808540--6808597	19	3.2	19	66	14	59	56	10	17	15	1.66
6812376--6812406	16	1.9	16	93	0	53	48	0	0	51	1.00
6822646--6822690	3	14.7	3	81	4	54	42	0	0	57	0.98
6828081--6828112	15	2.1	15	94	0	55	25	18	9	46	1.79
6835445--6835490	4	11.8	4	84	13	60	82	0	17	0	0.67
6835438--6835504	12	5.9	11	83	10	82	80	0	19	0	0.71
6835443--6835503	11	5.4	11	84	5	77	83	0	16	0	0.64
6835443--6835504	23	2.8	22	85	9	81	82	0	17	0	0.67
6835453--6835504	16	3.2	16	86	5	70	82	0	17	0	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6835822--6835858	16	2.3	16	90	9	58	32	8	5	54	1.53
6836863--6837173	83	3.6	83	89	4	435	26	12	22	38	1.90
6836863--6837173	175	1.8	166	86	7	444	26	12	22	38	1.90
6837011--6837188	92	1.9	92	90	2	286	28	12	23	35	1.91
6837544--6837648	52	2.0	52	98	0	201	37	13	17	32	1.88
6837928--6840169	113	19.8	113	95	1	3852	38	15	18	26	1.91
6840111--6840242	39	3.5	39	92	6	211	49	9	21	19	1.77
6839996--6840349	185	1.9	188	85	6	497	42	14	18	24	1.87
6840592--6840656	27	2.4	26	82	10	85	47	0	0	52	1.00
6845834--6845860	13	2.1	13	100	0	54	14	7	14	62	1.51
6845850--6845880	15	2.1	15	100	0	62	32	0	19	48	1.49
6845960--6846040	38	2.1	38	95	0	153	50	9	4	34	1.57
6848646--6848738	21	4.6	20	78	4	96	38	18	24	18	1.92
6848643--6848738	41	2.3	41	98	0	183	39	17	23	18	1.92
6848646--6848738	20	4.6	20	78	4	96	38	18	24	18	1.92
6848665--6848799	41	3.3	41	81	6	123	37	20	21	20	1.94
6848727--6848821	20	4.7	20	80	2	91	34	24	17	23	1.96
6849009--6849052	22	2.0	22	95	0	79	20	45	15	18	1.85
6849315--6849352	20	1.9	20	88	0	58	13	15	21	50	1.78
6850661--6850704	18	2.5	18	81	3	54	27	40	15	15	1.88
6851172--6851238	20	3.4	20	81	2	73	38	23	22	14	1.92
6851227--6851284	14	3.9	14	79	16	71	48	25	17	8	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6851211--6851289	32	2.4	33	95	2	142	46	24	18	10	1.80
6851296--6851449	19	8.6	19	75	14	105	13	20	23	42	1.87
6851318--6851375	14	3.9	14	79	16	71	10	17	24	48	1.78
6851301--6851391	32	2.8	33	91	3	157	12	18	21	47	1.81
6851376--6851430	20	2.8	19	89	5	83	16	25	23	34	1.95
6853291--6853324	14	2.4	14	85	0	50	32	0	20	47	1.51
6853443--6853509	18	3.8	19	79	18	83	46	16	22	14	1.84
6853535--6853585	20	2.5	20	93	0	84	19	23	23	33	1.97
6854642--6854700	24	2.5	24	82	0	73	28	16	18	35	1.93
6854875--6854899	12	2.1	12	100	0	50	72	0	28	0	0.86
6857192--6857250	19	3.4	19	73	22	74	45	16	22	15	1.84
6857192--6857270	33	2.4	33	93	0	131	43	18	25	12	1.86
6857266--6857308	20	2.2	20	87	4	61	16	18	23	41	1.89
6857294--6857327	14	2.4	14	85	0	50	8	23	20	47	1.78
6857449--6857485	14	2.6	14	91	0	65	45	24	0	29	1.53
6858844--6858904	21	3.0	20	73	7	59	21	19	36	22	1.95
6858883--6858966	42	2.0	42	85	0	114	22	16	39	21	1.92
6860966--6861145	19	9.8	19	74	12	110	43	22	21	12	1.85
6861061--6861150	19	4.7	19	94	2	144	45	22	18	13	1.84
6860966--6861150	33	5.1	38	79	10	156	43	22	22	12	1.86
6861146--6861216	19	3.7	19	84	1	79	11	19	23	45	1.83
6861731--6861824	20	4.7	20	77	2	80	23	17	24	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6861813--6861908	41	2.3	41	98	0	147	18	23	17	39	1.92
6861813--6861905	20	4.6	20	78	4	96	18	24	18	38	1.92
6863981--6864712	157	4.7	156	79	5	800	39	8	11	39	1.73
6864475--6864985	273	1.9	275	84	2	697	40	9	11	38	1.74
6864750--6865766	156	6.6	156	78	6	940	40	9	10	39	1.72
6864750--6865741	462	2.1	461	80	5	1106	41	9	10	38	1.73
6864763--6865766	312	3.2	308	82	6	1150	40	9	10	39	1.73
6865712--6865824	57	2.0	58	89	1	174	33	11	9	45	1.73
6865559--6865973	214	1.9	213	87	0	605	38	11	10	40	1.76
6865769--6867902	156	13.7	156	73	11	1302	40	9	12	37	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39