genome.fa.s9592.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009592.1 Hibiscus syriacus cultivar Beakdansim tig00116971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7920512

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   

This is table  6  of  39  ( 4673 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1081250--1081380	40	3.3	40	85	7	135	34	23	20	21	1.97
1081231--1081416	60	3.1	59	80	9	157	33	23	19	23	1.97
1081323--1081415	39	2.3	40	96	1	170	26	26	20	25	1.99
1084670--1084751	20	4.2	19	89	7	128	36	24	20	18	1.95
1084719--1084762	19	2.2	20	84	4	54	43	25	20	11	1.85
1084835--1084884	14	3.3	14	75	20	55	12	26	20	42	1.86
1084813--1084903	32	2.8	33	85	6	114	14	23	18	43	1.86
1085008--1085044	14	2.6	14	86	0	56	48	21	0	29	1.50
1086399--1086481	21	4.0	21	74	0	76	22	16	36	24	1.95
1086965--1087073	20	5.4	20	89	0	137	35	22	20	21	1.96
1087118--1087273	20	8.5	20	74	17	97	19	17	20	41	1.90
1087094--1087250	33	4.5	33	73	11	125	19	19	19	42	1.89
1089139--1089204	20	3.3	20	80	4	89	45	22	16	15	1.85
1089136--1089239	19	5.6	19	71	14	83	46	22	18	13	1.83
1089177--1089250	33	2.2	34	83	7	89	44	24	18	12	1.84
1089570--1089634	22	3.0	21	80	10	78	24	13	36	24	1.92
1089824--1089949	20	6.3	20	98	0	234	21	20	18	39	1.92
1090299--1090349	16	3.4	16	84	7	54	68	3	5	21	1.27
1092820--1092892	29	2.4	30	84	4	85	39	4	1	54	1.28
1093050--1093145	29	3.5	28	75	18	85	61	1	5	32	1.25
1093759--1093796	20	1.9	20	88	0	58	10	23	15	50	1.75
1096240--1096277	20	1.9	20	88	0	58	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1096257--1096291	16	2.2	16	90	10	54	62	0	0	37	0.95
1097335--1097410	29	2.6	29	76	14	84	27	1	14	56	1.46
1098357--1098406	19	2.7	18	76	11	64	40	2	0	58	1.10
1120834--1121014	89	2.0	89	98	0	353	28	23	19	27	1.99
1126229--1126433	102	2.0	102	98	0	392	29	20	23	26	1.99
1128647--1128680	14	2.3	15	95	5	61	20	14	17	47	1.83
1133109--1133142	18	1.9	17	88	5	50	26	2	0	70	1.01
1138370--1138396	12	2.2	12	100	0	54	85	0	14	0	0.61
1138370--1138411	13	3.3	13	84	12	52	80	0	19	0	0.70
1140560--1140779	114	1.9	114	90	0	350	34	14	20	30	1.93
1143227--1143270	21	2.1	21	100	0	88	43	13	13	29	1.83
1143325--1143400	22	3.5	22	89	3	118	34	14	14	36	1.87
1143816--1144466	224	2.9	222	85	5	855	37	14	19	27	1.91
1143807--1144466	337	2.0	337	88	2	995	37	14	19	28	1.91
1143816--1144466	113	5.8	113	85	4	843	37	14	19	27	1.91
1144690--1144750	3	20.7	3	90	9	99	32	0	0	67	0.91
1146655--1146882	124	1.8	123	85	4	316	37	8	9	44	1.68
1146864--1146931	30	2.2	31	78	17	79	52	2	2	41	1.31
1157092--1157213	25	4.8	25	69	9	86	32	9	13	44	1.76
1157066--1157220	76	2.0	76	91	0	247	34	9	13	41	1.77
1161238--1161799	248	2.2	245	83	10	660	42	17	11	29	1.83
1162624--1162673	23	2.2	23	88	0	73	40	12	16	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1162624--1162680	23	2.5	23	82	0	60	43	10	14	31	1.79
1162294--1162804	158	3.2	157	91	1	797	42	12	11	33	1.78
1162889--1163133	73	3.4	73	89	2	366	40	14	12	33	1.84
1163214--1163454	112	2.2	112	89	0	392	43	13	12	29	1.81
1163351--1163544	91	2.1	91	92	0	316	43	13	13	29	1.82
1163442--1163660	114	1.9	114	94	0	384	43	12	11	32	1.78
1163238--1163658	205	2.1	203	91	0	671	43	13	12	30	1.81
1172125--1172181	28	2.0	29	96	3	107	24	15	14	45	1.83
1172936--1173078	21	6.9	20	74	16	114	32	22	20	24	1.98
1172966--1173064	41	2.4	41	100	0	198	34	20	22	23	1.97
1172970--1173042	20	3.6	20	79	17	96	35	19	21	23	1.96
1173713--1173796	22	3.8	22	72	19	77	36	22	20	20	1.95
1173706--1173811	21	5.0	21	71	18	85	34	22	20	21	1.96
1173709--1173805	43	2.3	43	92	3	160	36	23	19	20	1.95
1175156--1175589	223	2.0	213	88	7	649	49	9	7	33	1.63
1176890--1177034	72	2.0	72	100	0	290	33	12	16	37	1.86
1178224--1178269	18	2.5	19	82	3	58	47	2	0	50	1.13
1180676--1180751	24	3.2	24	83	3	73	46	18	14	21	1.84
1180693--1180807	24	4.8	24	86	6	153	40	18	17	23	1.91
1180693--1180824	48	2.8	48	75	17	130	42	18	16	22	1.89
1183244--1183275	7	4.4	7	92	7	55	25	28	31	15	1.96
1183246--1183274	15	1.9	15	100	0	58	27	27	27	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1183245--1183291	8	6.5	8	75	20	50	21	25	36	17	1.94
1183267--1183296	13	2.3	13	100	0	60	13	23	46	16	1.82
1184223--1184294	23	3.1	22	78	7	81	54	12	22	11	1.69
1189239--1189280	22	2.0	22	90	4	68	16	19	35	28	1.93
1192380--1192404	7	3.6	7	100	0	50	64	0	12	24	1.27
1202258--1202329	37	1.9	37	94	0	126	26	12	19	41	1.87
1207495--1207527	12	2.8	12	100	0	66	51	9	15	24	1.72
1208623--1208800	60	2.9	60	75	14	168	33	22	6	38	1.79
1209171--1209214	14	3.3	14	84	15	58	45	2	0	52	1.13
1209694--1209755	32	1.9	32	93	0	106	53	11	9	25	1.67
1214551--1214621	15	4.8	15	78	3	90	42	7	16	33	1.76
1214551--1214621	30	2.4	29	95	2	124	42	7	16	33	1.76
1214623--1214661	14	2.8	14	84	0	51	28	17	17	35	1.94
1214985--1215037	20	2.7	20	75	16	56	49	1	0	49	1.12
1215025--1215065	21	1.9	22	85	5	57	48	0	0	51	1.00
1214994--1215052	28	2.2	27	83	16	79	47	1	0	50	1.11
1215082--1215161	31	2.5	33	78	17	89	50	0	1	48	1.08
1215111--1215154	22	2.0	23	86	4	63	54	0	0	45	0.99
1217368--1217403	18	2.1	17	89	5	54	69	0	2	27	1.02
1219513--1219570	30	1.9	30	89	0	89	31	17	13	37	1.89
1222580--1222675	30	3.2	30	94	1	149	31	27	19	21	1.98
1222664--1222761	31	3.2	30	78	13	117	32	18	19	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1229292--1229336	21	2.1	21	87	0	63	15	24	28	31	1.96
1234296--1234368	29	2.5	29	90	0	110	31	26	13	28	1.94
1240974--1241034	30	2.0	30	87	0	86	34	18	16	31	1.93
1241985--1242041	24	2.3	24	79	8	62	24	26	10	38	1.88
1244777--1244805	13	2.3	13	94	5	51	82	6	10	0	0.83
1246266--1246319	19	2.8	19	80	5	65	40	0	1	57	1.09
1246791--1246834	22	2.0	23	90	4	72	50	2	0	47	1.13
1246790--1246843	22	2.5	20	80	16	63	46	1	0	51	1.11
1264953--1264998	24	1.9	24	86	0	65	32	19	26	21	1.97
1266000--1266047	12	4.0	12	86	0	60	35	18	22	22	1.96
1266068--1266118	21	2.4	22	80	12	61	21	27	25	25	1.99
1268814--1268876	10	6.4	10	73	14	51	55	0	44	0	0.99
1268819--1268884	13	5.1	13	98	0	123	53	0	45	1	1.09
1271073--1271373	108	2.8	107	90	1	469	31	20	19	28	1.97
1272722--1272779	20	2.9	20	81	0	80	27	27	15	29	1.96
1272857--1272935	21	3.8	21	96	0	140	43	18	3	34	1.69
1277862--1277959	20	4.9	20	93	0	151	24	26	23	25	2.00
1278795--1278841	20	2.3	20	96	0	85	19	21	27	31	1.97
1279891--1280204	156	2.0	157	99	0	621	35	15	8	40	1.78
1281471--1281536	30	2.2	30	100	0	132	25	37	13	22	1.91
1283685--1283732	23	2.1	23	88	0	69	35	12	18	33	1.89
1284451--1284485	18	1.9	18	88	0	52	51	11	5	31	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1284448--1284504	24	2.4	25	79	8	73	49	14	5	31	1.65
1284689--1284753	23	2.8	23	90	0	94	38	18	7	35	1.80
1285114--1285175	22	2.7	23	85	5	81	38	19	6	35	1.77
1285516--1285565	21	2.4	21	86	6	66	42	20	2	36	1.63
1284691--1285687	415	2.4	421	95	4	1783	38	13	8	40	1.75
1288133--1288982	183	4.7	184	96	1	1568	34	15	14	35	1.89
1290443--1290526	3	28.0	3	76	0	78	23	34	5	35	1.80
1290443--1290541	12	8.0	12	78	6	72	22	34	7	36	1.81
1290456--1290538	42	2.0	42	92	0	139	21	34	8	34	1.84
1290474--1290541	21	3.4	18	69	21	55	19	35	8	36	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39