genome.fa.s9634.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009634.1 Hibiscus syriacus cultivar Beakdansim tig00117034_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17174986

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   

This is table  68  of  78  ( 9351 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13956571--13956629	29	2.0	29	100	0	118	23	13	13	49	1.78
13962064--13962116	3	17.3	3	84	11	72	33	0	1	64	1.05
13966094--13966134	16	2.6	16	96	0	73	46	12	19	21	1.82
13996226--13996272	20	2.4	20	78	3	51	27	19	10	42	1.84
13996788--13996829	2	21.0	2	100	0	84	50	0	0	50	1.00
14004757--14005153	37	11.2	37	70	17	222	31	19	9	40	1.83
14004765--14004958	100	1.9	103	90	3	313	31	18	9	40	1.82
14004883--14005033	75	2.0	75	90	0	239	30	20	9	39	1.84
14004908--14005227	138	2.3	139	82	4	353	31	20	9	38	1.84
14005089--14005152	18	3.5	19	67	28	57	31	20	9	39	1.84
14004954--14005227	138	2.0	138	84	2	354	30	20	9	39	1.84
14005401--14005456	22	2.6	22	80	2	69	23	17	12	46	1.82
14005594--14005669	36	2.1	36	92	0	125	23	23	13	39	1.90
14005596--14005660	21	3.4	20	68	24	59	24	24	12	38	1.90
14005431--14005777	100	3.4	99	81	10	414	28	18	11	40	1.86
14005694--14005805	36	3.1	35	88	2	152	25	19	12	42	1.86
14005580--14005922	136	2.5	137	86	1	447	30	18	12	39	1.87
14005721--14005906	101	1.8	101	84	0	255	31	16	13	38	1.87
14005822--14005919	36	2.7	37	81	6	112	36	14	12	36	1.83
14005586--14005950	137	2.7	136	83	3	322	30	18	12	38	1.88
14006083--14006389	145	2.1	144	88	0	452	26	27	15	29	1.96
14006399--14006465	22	3.1	22	69	16	68	20	19	25	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14006373--14006514	42	3.4	42	84	4	173	24	21	22	30	1.99
14013443--14013524	22	3.8	22	88	3	130	24	26	26	21	2.00
14015048--14015094	18	2.6	18	79	3	58	46	27	21	4	1.69
14019987--14020024	18	2.1	19	85	5	51	57	0	10	31	1.32
14022659--14022734	21	3.5	22	84	10	95	36	15	23	23	1.94
14024857--14025104	37	6.9	37	72	13	153	31	17	8	41	1.80
14025222--14025362	36	3.9	35	74	9	124	34	15	12	37	1.85
14025424--14025544	35	3.4	36	86	3	154	26	21	14	38	1.91
14025410--14025927	137	3.8	136	75	10	473	28	19	12	38	1.89
14025561--14025633	36	2.0	36	84	5	94	23	20	16	39	1.92
14025578--14025647	36	1.9	36	82	5	88	24	22	12	40	1.89
14025668--14025729	21	3.2	21	61	25	55	25	20	11	41	1.86
14025662--14025821	36	4.4	36	88	0	230	26	21	12	40	1.89
14025461--14025738	101	2.8	101	87	0	405	27	21	13	38	1.90
14025561--14025959	173	2.3	173	88	1	568	29	19	12	38	1.89
14025836--14025927	36	2.6	36	82	5	116	31	18	9	40	1.83
14025828--14025947	36	3.4	36	80	7	113	30	17	12	40	1.86
14026088--14026394	145	2.1	144	87	0	434	26	26	16	30	1.97
14026379--14026519	42	3.4	42	84	4	180	23	21	22	31	1.98
14031258--14031296	17	2.3	17	95	0	69	48	5	28	17	1.68
14032553--14032587	14	2.5	14	100	0	70	28	0	37	34	1.58
14045466--14045501	18	1.9	19	88	5	56	33	0	5	61	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14045685--14045733	24	2.0	24	84	11	64	42	8	20	28	1.80
14046322--14046346	11	2.3	11	100	0	50	8	8	0	84	0.79
14046523--14046576	18	2.9	18	81	10	56	22	3	5	68	1.26
14046528--14046580	20	2.5	20	80	17	63	18	3	3	73	1.14
14051163--14051209	20	2.3	21	85	3	60	34	17	17	31	1.92
14059337--14059414	23	3.4	23	98	0	147	30	21	8	38	1.84
14061553--14061804	99	2.6	98	89	3	389	34	17	17	30	1.93
14062713--14063001	64	4.5	64	87	1	420	33	21	14	31	1.93
14062706--14063001	127	2.3	128	88	2	454	33	20	14	31	1.92
14063157--14063465	124	2.5	124	89	0	467	34	27	13	23	1.93
14063533--14063836	85	3.6	85	81	4	319	34	20	16	27	1.95
14066095--14066166	11	6.4	11	84	13	85	19	2	1	76	0.99
14066089--14066151	17	3.7	17	78	16	67	17	3	0	79	0.86
14066095--14066166	33	2.1	34	87	5	101	19	2	1	76	0.99
14066089--14066156	7	9.3	7	75	9	55	17	2	0	79	0.86
14066090--14066247	11	14.9	10	71	22	51	25	3	1	69	1.12
14066286--14066346	17	3.4	16	78	17	59	11	3	4	80	0.99
14066286--14066357	6	12.0	6	73	16	53	13	2	4	79	1.00
14066286--14066407	18	6.7	17	68	20	61	13	3	7	75	1.14
14071280--14071335	20	2.6	22	86	8	71	21	28	19	30	1.98
14073958--14074017	24	2.5	24	94	0	102	36	26	18	18	1.94
14074003--14074059	21	2.7	21	94	0	105	35	28	15	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14075564--14075764	98	2.1	97	84	4	262	23	16	17	42	1.89
14075564--14075822	98	2.7	97	81	5	247	23	18	17	40	1.91
14079885--14080663	136	5.7	136	85	1	1010	36	17	19	26	1.94
14079885--14080738	272	3.1	272	84	1	1120	36	17	19	26	1.94
14081327--14081597	98	2.8	98	84	2	303	25	19	16	37	1.93
14086136--14086200	28	2.1	33	81	16	86	40	3	12	44	1.57
14087839--14087877	15	2.5	16	80	19	55	23	12	23	41	1.88
14090918--14091023	2	53.0	2	100	0	212	50	0	0	50	1.00
14091126--14091171	24	1.9	24	86	8	67	50	0	13	36	1.41
14091616--14091665	12	3.9	12	77	12	55	50	2	10	38	1.48
14091606--14091663	25	2.2	27	81	6	66	53	1	8	36	1.42
14091631--14092057	28	14.4	30	71	20	93	48	2	7	41	1.42
14091666--14091729	23	2.6	26	82	9	89	48	3	7	40	1.48
14091716--14091773	16	3.7	15	88	6	55	46	1	0	51	1.11
14091731--14091840	2	54.0	2	72	16	75	49	2	5	42	1.40
14091858--14091968	8	14.9	8	73	20	89	49	0	11	37	1.46
14091888--14091950	7	9.0	7	73	18	51	52	0	9	38	1.34
14091908--14091957	13	3.7	13	77	17	57	48	0	12	40	1.40
14091881--14091993	21	5.4	21	79	11	101	50	0	9	38	1.42
14091948--14092057	2	53.0	2	87	10	159	49	0	3	46	1.25
14092057--14092104	2	24.0	2	95	0	87	47	0	52	0	1.00
14092114--14092532	22	18.2	23	68	25	100	51	1	8	38	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14092112--14092509	8	54.0	8	68	27	80	51	1	8	37	1.42
14092114--14092232	29	4.2	29	80	18	110	52	0	9	37	1.33
14092226--14092268	2	21.5	2	86	9	61	51	0	2	46	1.13
14092383--14093796	2	714.0	2	64	21	359	43	4	3	48	1.42
14092286--14092539	107	2.4	106	80	10	299	51	2	7	38	1.44
14092508--14093096	67	8.4	71	70	20	233	40	6	1	52	1.34
14092684--14092740	7	7.9	7	75	7	51	35	5	0	59	1.20
14093246--14093295	19	2.5	19	87	9	64	46	6	2	46	1.39
14093344--14093399	17	3.1	17	84	7	58	50	3	0	46	1.19
14093362--14093431	21	3.3	21	76	11	63	48	2	1	47	1.25
14093383--14093431	21	2.4	21	79	3	64	48	4	2	44	1.33
14093588--14093791	13	16.5	13	68	23	88	44	3	5	46	1.44
14093556--14093796	9	29.5	8	66	20	90	46	3	4	45	1.43
14093759--14093796	11	3.5	11	79	13	51	44	0	2	52	1.14
14096097--14096600	54	9.3	54	85	0	623	29	18	19	32	1.95
14101782--14101807	12	2.2	12	100	0	52	7	0	0	92	0.39
14106852--14106889	19	2.0	19	100	0	76	10	15	26	47	1.78
14114317--14114365	20	2.5	19	90	6	71	34	10	28	26	1.89
14114786--14115514	54	13.6	54	87	3	977	29	18	18	33	1.95
14115939--14115976	20	1.9	20	94	0	67	23	23	28	23	1.99
14128563--14128602	19	2.0	21	85	9	57	10	35	0	55	1.34
14135288--14135366	37	2.1	38	83	6	99	30	20	10	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14135322--14135477	69	2.3	68	85	4	215	32	19	10	38	1.85
14136177--14136216	21	1.9	22	90	10	66	45	10	22	22	1.82
14135948--14136579	119	5.4	117	71	8	372	40	14	19	26	1.89
14138703--14138777	35	2.1	35	92	0	123	44	25	0	30	1.55
14142965--14143035	31	2.3	31	85	0	97	33	8	42	15	1.77
14148065--14148095	9	3.4	9	95	0	53	25	6	0	67	1.14
14148167--14148222	28	2.0	27	83	13	69	23	10	7	58	1.56
14150504--14150549	23	2.0	24	86	4	67	21	23	23	30	1.99
14151301--14151424	64	1.9	65	85	4	171	29	23	18	28	1.98
14154923--14155082	65	2.5	64	82	5	180	30	20	20	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78