genome.fa.s9634.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009634.1 Hibiscus syriacus cultivar Beakdansim tig00117034_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17174986

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   

This is table  70  of  78  ( 9351 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14378859--14378892	15	2.2	16	94	5	61	35	0	5	58	1.22
14379096--14379124	3	9.7	3	100	0	58	34	0	0	65	0.93
14379148--14379453	150	2.0	149	85	7	415	38	5	6	49	1.52
14379849--14379877	15	1.9	15	100	0	58	44	13	20	20	1.85
14379856--14380133	121	2.3	121	92	1	452	41	14	19	24	1.88
14381863--14382154	143	2.0	144	82	7	353	38	6	6	49	1.54
14388475--14389124	325	2.0	324	86	1	908	35	21	19	24	1.96
14392382--14392419	15	2.4	16	83	16	53	55	10	7	26	1.61
14394125--14394160	18	2.0	18	88	0	54	63	2	25	8	1.36
14395925--14396236	57	5.6	57	82	6	316	36	10	17	34	1.85
14395917--14396161	114	2.1	114	86	4	359	35	10	18	35	1.86
14396108--14396236	54	2.4	54	90	1	195	37	10	17	34	1.84
14411979--14412029	24	2.2	24	85	3	68	47	0	11	41	1.40
14414282--14414393	2	58.0	2	85	13	155	48	0	1	50	1.11
14414283--14414431	32	5.0	31	84	11	111	44	0	4	50	1.22
14414376--14414646	39	7.3	38	85	10	314	45	2	7	44	1.44
14414376--14414676	36	8.2	37	83	10	318	44	2	7	44	1.45
14414927--14414974	22	2.1	23	92	3	80	50	27	18	4	1.65
14415677--14415704	13	2.2	13	100	0	56	28	0	0	71	0.86
14415739--14415778	15	2.7	15	88	3	55	27	0	0	72	0.85
14421230--14421478	83	3.0	84	87	2	347	34	21	18	24	1.96
14422445--14422476	2	16.5	2	93	6	57	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14422459--14422641	39	4.7	39	89	6	257	43	1	8	46	1.40
14422517--14422580	14	4.9	13	70	12	51	40	0	10	48	1.38
14422530--14422729	103	1.9	104	86	6	289	45	3	8	43	1.50
14422570--14422705	64	2.1	63	85	8	177	47	3	7	41	1.49
14422606--14422666	25	2.3	26	91	5	97	44	3	6	45	1.46
14422633--14422728	39	2.5	38	81	3	111	45	5	7	41	1.54
14422799--14422848	23	2.1	24	82	10	59	34	2	0	64	1.05
14422832--14422882	17	2.9	18	86	13	72	29	0	0	70	0.87
14422837--14422882	7	6.7	7	83	11	60	28	0	0	71	0.86
14422833--14422879	21	2.2	21	92	0	76	27	0	0	72	0.85
14424168--14424451	59	4.8	59	95	0	489	34	12	22	30	1.91
14426144--14426241	27	3.8	25	76	12	72	22	2	3	72	1.09
14426174--14426208	18	2.0	18	88	5	54	22	0	0	77	0.78
14426187--14426338	35	4.5	34	69	15	93	22	3	3	71	1.16
14426695--14426766	4	18.8	4	74	16	55	20	2	2	73	1.08
14426695--14426775	14	5.7	14	75	17	62	20	2	3	72	1.11
14426694--14426744	19	2.7	19	77	19	61	25	0	1	72	0.95
14426703--14426766	23	2.8	23	83	6	69	20	3	3	73	1.11
14428864--14428919	19	2.9	19	91	0	94	33	28	14	23	1.94
14428924--14428986	20	3.2	20	95	0	117	46	15	12	25	1.82
14428984--14429073	41	2.2	41	87	0	126	33	27	16	22	1.95
14429013--14429090	20	3.8	20	78	9	95	28	26	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14429004--14429120	61	1.9	61	82	0	144	31	23	18	26	1.97
14429260--14429354	22	4.3	22	84	0	118	22	41	13	23	1.89
14429739--14429775	14	2.6	14	86	0	56	18	21	18	40	1.91
14429767--14429815	20	2.5	20	82	0	53	22	18	22	36	1.95
14429783--14429838	20	2.8	20	91	0	85	12	16	21	50	1.78
14429802--14429845	20	2.2	20	91	0	70	11	13	20	54	1.69
14431608--14431744	34	3.9	34	78	11	157	35	22	21	19	1.96
14431589--14431748	20	8.6	19	68	22	108	36	22	21	19	1.95
14431600--14431742	74	1.9	74	98	0	277	37	20	20	20	1.95
14431753--14431789	19	1.9	19	88	0	56	10	16	24	48	1.77
14431773--14431850	33	2.3	33	86	2	102	15	21	23	39	1.91
14431825--14431874	20	2.5	20	93	0	82	28	20	22	30	1.98
14432412--14432472	21	2.9	22	75	7	63	21	42	16	19	1.89
14432391--14432472	42	2.0	42	87	0	119	20	40	17	21	1.91
14434829--14434972	20	7.1	20	79	9	166	25	20	25	28	1.99
14434829--14434972	61	2.4	61	92	0	252	25	20	25	28	1.99
14434904--14434992	41	2.2	41	95	0	160	21	20	28	30	1.98
14434981--14435030	20	2.5	20	93	0	82	22	18	20	40	1.92
14435119--14435155	19	1.9	19	89	10	58	24	16	29	29	1.96
14439655--14439788	67	2.0	67	94	0	232	34	9	21	34	1.86
14446116--14446206	46	2.0	46	89	2	139	29	24	17	28	1.97
14460487--14460542	20	2.9	19	67	15	51	33	16	7	42	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14462486--14462527	20	2.1	20	95	0	75	47	16	14	21	1.82
14464625--14464808	55	3.4	55	90	0	280	35	12	20	31	1.90
14465014--14465039	13	2.0	13	100	0	52	53	15	23	7	1.67
14465521--14465573	19	2.7	20	94	5	99	15	24	43	16	1.87
14468253--14468332	20	3.9	20	76	13	65	16	26	32	25	1.96
14474450--14474501	3	17.3	3	76	7	52	59	0	0	40	0.97
14479789--14479813	11	2.3	11	100	0	50	80	0	0	20	0.72
14481813--14481905	37	2.5	37	82	3	107	29	21	16	33	1.95
14488453--14488495	20	2.2	20	91	0	68	34	20	11	32	1.89
14495998--14496072	39	1.9	39	97	0	141	33	20	10	36	1.87
14504528--14504559	15	2.1	16	94	5	57	46	0	6	46	1.27
14504524--14504561	20	1.9	20	89	10	60	42	0	5	52	1.24
14504526--14504561	15	2.4	14	86	13	54	41	0	5	52	1.24
14510570--14510629	23	2.5	24	78	2	77	8	13	15	63	1.51
14528248--14528275	14	2.0	14	100	0	56	28	28	0	42	1.56
14536804--14536845	17	2.4	18	92	4	68	21	14	4	59	1.53
14542744--14543072	42	7.7	42	79	4	293	33	16	22	27	1.95
14545437--14545521	44	1.9	45	85	7	120	27	22	7	43	1.79
14546209--14546423	45	4.8	45	85	2	252	30	20	10	39	1.85
14546198--14546438	45	5.4	44	81	5	207	29	20	9	39	1.85
14546198--14546464	135	2.0	134	79	2	293	30	21	10	38	1.86
14546310--14546464	45	3.4	46	77	5	111	29	22	11	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14547940--14548226	42	6.9	42	78	5	172	32	14	22	30	1.94
14548098--14548216	41	2.9	41	89	1	175	37	12	17	31	1.87
14547840--14548289	164	2.7	164	80	3	458	32	17	19	30	1.95
14570496--14570767	138	2.0	138	89	1	420	32	29	14	23	1.94
14572224--14572278	25	2.2	25	87	6	76	38	29	7	25	1.83
14572242--14572289	25	1.9	25	82	0	60	35	25	14	25	1.94
14572327--14572370	22	1.9	24	90	9	74	38	0	22	38	1.55
14572585--14572851	123	2.2	123	85	1	374	32	16	18	31	1.94
14573076--14573317	42	5.8	42	83	5	271	26	16	18	38	1.92
14573078--14573317	83	2.9	83	90	3	358	26	16	18	38	1.92
14575149--14575219	20	3.5	20	94	0	124	39	18	21	21	1.93
14575900--14575949	20	2.5	20	90	0	73	18	18	28	36	1.94
14575917--14575971	20	2.8	20	91	0	83	10	16	23	49	1.77
14575936--14575979	20	2.2	20	87	0	61	13	13	20	52	1.74
14580240--14580279	21	1.9	21	89	0	62	10	25	40	25	1.86
14580260--14580322	20	2.9	21	79	9	65	15	25	34	23	1.95
14586664--14586807	20	7.5	20	82	9	183	38	20	19	20	1.93
14586671--14586828	40	4.3	38	77	13	129	41	20	19	18	1.91
14586854--14586960	20	5.3	20	93	0	169	20	18	21	39	1.93
14588879--14588914	14	2.6	14	90	0	54	30	0	22	47	1.52
14589012--14589051	20	2.0	20	95	0	71	42	22	20	15	1.88
14589016--14589193	33	5.4	33	95	0	293	41	19	23	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14589068--14589187	14	7.5	14	70	24	78	41	19	24	15	1.89
14589200--14589284	20	4.2	20	87	3	127	17	22	24	35	1.95
14591737--14591788	24	2.2	24	82	0	59	36	21	19	23	1.95
14597749--14597804	22	2.5	22	77	8	60	30	28	30	10	1.91
14599381--14599426	12	3.8	12	77	11	58	13	17	13	56	1.67
14599381--14599441	24	2.5	24	92	5	97	16	16	11	55	1.68
14602254--14602322	12	5.8	12	74	6	68	15	15	14	53	1.73
14602258--14602321	24	2.7	24	95	0	110	15	17	12	54	1.71
14604345--14604420	32	2.4	31	78	4	80	13	21	31	34	1.91
14609657--14609695	21	1.9	20	89	5	60	38	25	12	23	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78