genome.fa.s113.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold113
Parameters: 2 7 7 80 10 50 1000
Length:  3764034

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  17  of  23  ( 2678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2573950--2573983	2	17.0	2	100	0	68	0	50	0	50	1.00
2576839--2577029	74	2.6	73	81	4	224	35	1	9	53	1.44
2577719--2577766	25	2.0	24	87	4	69	45	6	2	45	1.40
2580221--2580246	13	2.0	13	100	0	52	30	15	15	38	1.88
2580306--2580378	20	3.6	20	81	3	101	32	17	13	35	1.89
2580285--2580378	41	2.3	41	94	3	163	31	17	12	38	1.87
2580285--2580360	21	3.7	21	77	7	84	31	15	11	40	1.84
2582821--2582859	13	3.0	13	88	0	60	35	12	17	33	1.88
2582845--2582923	20	3.7	20	78	15	77	44	15	15	25	1.85
2584940--2584970	15	2.1	15	93	0	53	12	22	16	48	1.80
2589031--2589056	13	2.0	13	100	0	52	30	15	15	38	1.88
2589116--2589188	20	3.6	20	81	3	101	31	19	13	35	1.91
2589095--2589188	41	2.3	41	96	0	170	30	18	12	38	1.88
2589095--2589170	21	3.7	21	78	3	91	30	17	11	40	1.85
2592427--2592631	79	2.6	79	78	8	195	35	10	24	29	1.89
2597719--2597863	31	4.7	31	85	10	190	25	29	19	25	1.98
2597719--2597887	62	2.7	63	84	8	206	25	29	17	27	1.97
2597719--2597898	93	1.9	93	81	8	215	25	30	17	27	1.97
2597871--2598252	34	11.8	33	76	15	340	21	34	13	30	1.92
2597871--2598442	70	8.9	61	79	15	393	21	34	12	31	1.91
2597871--2598251	62	6.0	60	85	9	386	21	34	13	30	1.92
2598059--2598447	70	5.4	70	83	12	446	20	34	12	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2598166--2598338	87	2.0	88	93	1	294	20	32	13	33	1.91
2598279--2598447	34	4.9	33	83	10	214	20	33	12	34	1.90
2598120--2598408	158	1.8	157	92	0	488	20	33	12	32	1.90
2598250--2598447	71	2.8	69	89	3	290	19	33	12	34	1.89
2598261--2598454	35	5.5	34	79	10	212	18	34	12	35	1.88
2598276--2598500	104	2.2	101	79	12	253	21	35	12	30	1.90
2598452--2598521	33	2.1	35	94	5	126	25	37	17	20	1.94
2598521--2599784	49	26.7	49	84	8	1615	24	26	18	30	1.98
2598570--2599793	92	13.0	92	92	2	1745	24	26	18	30	1.98
2598570--2599793	562	2.2	562	97	0	2295	24	26	18	30	1.98
2600680--2600704	13	1.9	13	100	0	50	36	16	16	32	1.90
2600660--2600724	33	2.0	33	87	0	94	33	12	13	40	1.82
2600590--2600828	123	1.9	123	100	0	478	36	13	15	35	1.86
2600803--2600827	13	1.9	13	100	0	50	36	16	16	32	1.90
2607726--2607765	20	2.0	20	95	0	71	72	7	15	5	1.24
2607726--2607771	18	2.4	19	85	10	58	69	8	15	6	1.34
2609080--2609224	31	4.7	31	85	10	199	25	30	19	24	1.98
2609080--2609248	62	2.7	63	85	8	215	25	30	17	27	1.97
2609080--2609259	93	1.9	93	82	8	224	25	30	17	27	1.97
2609264--2609440	28	6.0	28	71	15	106	23	32	14	29	1.94
2609232--2609735	70	7.9	61	78	15	361	21	32	13	32	1.92
2609390--2609441	27	1.9	27	96	0	95	23	38	17	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2609420--2609740	70	4.4	71	81	14	382	20	33	12	33	1.90
2609459--2609631	87	2.0	88	94	1	303	20	32	13	32	1.91
2609554--2609740	71	2.7	69	90	4	295	18	33	12	35	1.89
2609554--2609760	34	5.9	35	82	11	253	19	34	12	33	1.89
2609572--2609760	104	1.8	102	87	4	256	20	34	11	33	1.89
2609745--2609814	33	2.1	35	91	5	117	25	35	17	21	1.95
2609576--2609793	104	2.1	102	81	8	244	22	35	12	29	1.91
2609814--2619777	49	212.5	49	83	9	12337	24	25	18	30	1.98
2609862--2619777	92	105.8	93	90	4	11531	24	25	18	30	1.98
2610381--2610449	22	3.2	22	63	19	54	24	24	18	31	1.98
2609862--2620607	562	19.2	559	88	6	12145	24	25	18	30	1.98
2619820--2620607	94	8.5	93	78	15	793	25	25	18	30	1.98
2621494--2621518	13	1.9	13	100	0	50	36	16	16	32	1.90
2621474--2621538	33	2.0	33	87	0	94	33	12	13	40	1.82
2621581--2621608	13	2.2	13	100	0	56	28	14	17	39	1.89
2625629--2625684	20	2.7	20	86	5	76	46	12	14	26	1.80
2625732--2625805	21	3.6	21	76	7	71	29	14	13	41	1.85
2629649--2629689	21	2.0	20	90	4	64	51	17	12	19	1.76
2632853--2632935	40	2.1	40	97	0	157	28	12	16	42	1.84
2636321--2636346	13	2.0	13	100	0	52	30	15	15	38	1.88
2638893--2638917	13	1.9	13	100	0	50	36	16	16	32	1.90
2640976--2641006	15	2.1	15	93	0	53	12	22	16	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2644021--2644046	13	2.0	13	100	0	52	30	15	15	38	1.88
2650529--2650607	20	3.7	20	75	15	77	29	15	13	41	1.85
2650594--2650632	13	3.0	13	96	0	69	30	17	15	35	1.91
2653171--2653196	13	2.0	13	100	0	52	38	15	15	30	1.88
2653153--2653215	32	2.0	32	90	6	101	41	15	14	28	1.87
2663149--2663174	13	2.0	13	100	0	52	38	15	15	30	1.88
2665393--2665437	21	2.1	21	84	8	56	53	4	20	22	1.63
2667241--2667271	15	2.1	15	93	0	53	48	16	22	12	1.80
2671915--2671940	13	2.0	13	100	0	52	38	15	15	30	1.88
2676441--2676495	19	2.8	20	86	5	76	38	18	12	30	1.88
2679394--2679427	15	2.3	15	89	0	50	17	11	44	26	1.83
2680815--2680993	79	2.3	78	81	3	191	32	15	26	25	1.95
2680949--2681022	28	2.6	28	83	10	89	24	17	32	25	1.97
2681009--2681191	52	3.5	52	79	8	174	32	11	25	30	1.91
2681008--2681229	104	2.1	103	81	5	252	31	12	26	29	1.93
2681042--2681229	52	3.6	52	82	3	175	33	13	25	28	1.93
2681307--2681572	80	3.3	79	87	1	343	31	15	26	26	1.95
2681503--2681850	52	6.7	52	69	15	216	31	12	27	28	1.93
2681501--2681850	104	3.3	104	72	9	350	32	12	27	28	1.92
2681658--2681733	28	2.7	28	85	0	89	22	18	35	23	1.96
2684818--2684914	42	2.3	42	77	8	101	42	12	28	16	1.84
2685053--2685140	26	3.3	26	68	20	81	22	20	30	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2685006--2685741	55	13.0	54	83	10	803	25	20	26	27	1.99
2685006--2685741	116	6.5	112	85	7	815	25	20	26	27	1.99
2685006--2685740	171	4.3	166	85	7	849	25	20	26	27	1.99
2685594--2685681	28	3.2	28	63	15	74	28	20	25	26	1.99
2686740--2686780	13	3.1	13	86	13	57	0	2	7	90	0.54
2699350--2699421	28	2.6	27	84	8	83	22	18	36	23	1.95
2699410--2699630	52	4.3	50	78	5	199	31	12	26	29	1.93
2699669--2699933	80	3.4	80	88	2	360	32	15	26	25	1.96
2699670--2699973	80	3.9	79	84	6	334	31	15	26	26	1.95
2699909--2700229	52	6.3	51	75	10	278	33	11	24	30	1.90
2699941--2700183	102	2.4	100	78	8	238	34	10	23	30	1.89
2699909--2700229	154	2.1	154	93	0	552	33	11	24	30	1.90
2700294--2700395	53	1.9	53	84	7	136	35	11	23	29	1.90
2702734--2702791	21	2.8	22	87	12	79	44	12	15	27	1.82
2702814--2702865	13	3.5	13	73	26	50	36	17	13	32	1.89
2702822--2702907	19	4.7	19	72	20	76	37	16	12	33	1.87
2702814--2702886	32	2.3	32	97	0	137	35	17	12	34	1.88
2710556--2710691	51	2.7	51	90	2	202	39	13	16	29	1.88
2710653--2710711	20	2.9	21	82	7	77	40	13	13	32	1.84
2711000--2711441	220	2.0	220	95	0	803	32	16	23	27	1.96
2714002--2714449	79	5.8	78	78	5	426	28	23	12	35	1.91
2714002--2714464	233	2.0	233	81	6	553	28	23	12	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2720541--2720635	32	3.0	32	85	3	129	23	27	12	36	1.91
2720667--2721594	61	15.4	61	80	7	913	24	21	18	35	1.96
2720667--2721540	181	4.8	182	81	8	973	24	21	18	35	1.96
2720669--2721553	367	2.4	361	90	3	1388	24	21	18	35	1.95
2721647--2722149	121	4.2	119	82	4	521	20	26	12	40	1.88
2721605--2722116	43	12.5	41	68	16	226	19	27	13	40	1.88
2721850--2721941	35	2.6	34	81	10	96	15	28	10	45	1.79
2721812--2721960	78	1.9	78	82	5	185	18	26	14	40	1.88
2721721--2722157	242	1.8	241	85	1	608	19	26	13	40	1.88
2723562--2723616	20	2.8	20	85	0	74	29	12	9	49	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23