genome.fa.s113.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold113
Parameters: 2 7 7 80 10 50 1000
Length:  3764034

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  22  of  23  ( 2678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3583678--3583802	57	2.2	58	85	5	164	32	30	18	19	1.95
3583819--3584764	48	20.0	50	69	17	417	25	26	17	30	1.98
3583929--3584450	87	6.0	87	90	0	810	26	27	19	26	1.99
3584360--3584556	52	3.7	52	77	7	214	24	26	17	31	1.97
3584360--3584572	110	1.9	110	93	0	363	25	26	16	31	1.96
3585392--3585451	19	3.0	20	79	9	70	45	13	11	30	1.79
3591513--3591538	13	2.0	13	100	0	52	30	15	15	38	1.88
3591647--3591696	21	2.4	22	83	9	61	32	20	0	48	1.50
3593564--3593617	20	2.7	20	85	5	74	33	12	16	37	1.87
3594580--3594617	20	2.0	20	94	5	69	34	15	13	36	1.87
3594652--3594689	20	2.0	20	94	5	69	34	18	10	36	1.85
3594580--3594756	72	2.5	72	99	0	345	32	17	12	36	1.88
3594724--3594777	20	2.7	20	91	5	83	37	18	12	31	1.89
3594806--3594852	20	2.4	20	89	3	69	34	17	17	31	1.92
3603467--3603504	20	2.0	20	94	5	69	36	15	10	36	1.82
3603621--3603693	20	3.7	19	88	3	92	39	15	16	28	1.89
3604963--3605752	156	5.1	151	80	6	756	26	17	18	37	1.93
3611072--3611097	13	2.0	13	100	0	52	30	15	15	38	1.88
3611157--3611229	20	3.6	20	81	3	101	31	19	13	35	1.91
3611136--3611229	41	2.3	41	96	0	170	30	18	12	38	1.88
3611136--3611211	21	3.7	21	78	3	91	30	17	11	40	1.85
3613675--3613713	13	3.0	13	96	0	69	35	15	17	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3613699--3613777	20	3.7	20	75	18	70	45	15	13	25	1.83
3615800--3615830	15	2.1	15	93	0	53	12	22	16	48	1.80
3619895--3619920	13	2.0	13	100	0	52	30	15	15	38	1.88
3619980--3620052	20	3.6	20	81	3	101	31	19	13	35	1.91
3619959--3620052	41	2.3	41	96	0	170	30	18	12	38	1.88
3619959--3620034	21	3.7	21	78	3	91	30	17	11	40	1.85
3631063--3631163	1	101.0	1	72	0	67	85	9	3	0	0.78
3631061--3631163	42	2.4	42	87	6	136	84	10	3	0	0.80
3631066--3631177	14	7.8	14	76	22	92	83	12	3	0	0.83
3631065--3631177	34	3.2	34	78	11	102	83	12	3	0	0.83
3632601--3633014	31	14.1	30	77	10	356	31	31	15	21	1.94
3632608--3633029	58	7.2	58	81	10	364	32	31	15	20	1.94
3632607--3633027	89	4.8	87	83	6	408	32	31	15	20	1.93
3632605--3633015	146	2.8	145	87	3	565	31	31	15	21	1.94
3632728--3633061	28	11.5	28	80	9	199	33	30	16	19	1.94
3633063--3633353	49	6.1	49	79	5	326	24	25	18	30	1.98
3633125--3633211	43	2.0	43	84	0	111	26	27	16	29	1.96
3633076--3633353	92	2.9	94	89	3	389	25	25	18	30	1.98
3633063--3633384	98	3.3	98	85	6	431	24	26	18	31	1.97
3634086--3634201	19	6.7	19	77	22	121	33	12	17	37	1.86
3634126--3634182	13	3.9	13	76	24	60	35	14	15	35	1.88
3634107--3634206	32	3.1	32	98	0	191	34	12	17	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3634243--3634423	52	3.5	52	93	0	308	34	17	18	29	1.94
3634219--3634414	104	1.9	104	88	2	277	34	17	17	29	1.94
3637259--3637705	226	2.0	225	84	4	587	27	26	19	27	1.99
3638535--3638576	14	2.8	16	75	20	54	73	0	19	7	1.05
3638858--3638903	20	2.2	21	84	3	58	34	13	17	34	1.88
3646438--3646504	37	1.9	35	88	11	102	29	25	11	32	1.92
3646983--3647008	13	2.0	13	100	0	52	30	23	15	30	1.95
3647098--3647153	21	2.6	22	88	5	96	35	10	25	28	1.89
3647266--3647319	20	2.7	21	82	8	76	29	14	16	38	1.89
3647358--3647398	21	2.0	21	85	9	57	39	9	12	39	1.76
3651058--3651099	21	2.0	21	85	0	57	23	28	4	42	1.74
3652192--3652258	37	1.9	35	88	11	102	29	25	11	32	1.92
3652737--3652762	13	2.0	13	100	0	52	30	23	15	30	1.95
3652852--3652907	21	2.6	22	88	5	96	35	10	25	28	1.89
3653020--3653073	20	2.7	21	82	8	76	29	14	16	38	1.89
3653112--3653152	21	2.0	21	85	9	57	39	9	12	39	1.76
3655753--3655791	21	1.9	20	94	5	69	35	12	15	35	1.86
3660034--3660073	20	2.0	20	90	0	62	22	17	12	47	1.81
3665915--3665943	12	2.4	12	100	0	58	44	13	24	17	1.85
3666039--3666086	12	3.9	12	75	5	51	41	8	20	29	1.81
3666045--3666099	25	2.2	25	90	0	83	41	9	21	27	1.83
3666129--3666274	14	11.1	14	68	22	75	43	6	21	28	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3666142--3666229	23	3.6	23	71	21	79	44	5	21	28	1.75
3666162--3666249	25	3.4	25	73	17	90	44	6	21	27	1.77
3666166--3666255	29	3.3	28	72	23	93	44	7	21	26	1.79
3666134--3666263	52	2.5	52	92	1	206	43	6	21	29	1.77
3673351--3673430	42	1.9	42	97	0	151	18	11	18	51	1.75
3676091--3676115	13	1.9	13	100	0	50	36	16	8	40	1.77
3676745--3676881	61	2.2	61	87	5	188	37	13	27	21	1.91
3676984--3677108	49	2.5	51	82	3	164	31	18	26	24	1.98
3676984--3677122	49	2.8	49	82	3	161	30	17	25	25	1.97
3677187--3677311	35	3.8	35	70	16	122	32	12	32	22	1.92
3677188--3677321	62	2.2	62	97	0	250	33	12	32	21	1.91
3677325--3677417	27	3.4	27	83	2	116	29	16	33	21	1.95
3678857--3678927	1	71.0	1	74	0	61	2	0	9	87	0.65
3678857--3678927	28	2.6	27	85	12	92	2	0	9	87	0.65
3678857--3678924	7	9.9	7	80	16	72	2	0	10	86	0.67
3678864--3678928	22	2.9	22	82	13	87	3	0	10	86	0.69
3680658--3680869	32	6.8	32	81	7	224	26	32	18	21	1.97
3680658--3680862	64	3.2	62	85	7	254	26	32	19	22	1.97
3680967--3681138	43	3.8	43	71	15	139	26	23	16	34	1.95
3680858--3681190	95	3.5	94	81	2	355	25	25	16	31	1.97
3680996--3681094	52	1.9	52	83	4	128	26	24	14	35	1.93
3681109--3681492	52	7.6	51	72	11	245	24	24	16	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3681446--3681569	61	2.0	61	84	6	162	26	25	9	38	1.86
3683137--3683181	21	2.2	20	88	11	74	20	15	15	48	1.80
3692063--3692117	20	2.8	20	83	8	76	34	12	9	43	1.74
3694401--3694516	51	2.2	52	83	1	135	30	27	12	30	1.92
3694583--3694815	79	2.9	78	75	4	225	27	24	14	33	1.94
3694325--3694727	131	3.1	130	86	2	542	27	25	12	33	1.93
3706917--3706972	29	1.9	29	96	0	103	35	12	33	17	1.88
3706924--3706972	16	3.2	16	69	16	50	36	12	34	16	1.86
3707230--3707290	1	61.0	1	80	0	68	90	8	1	0	0.53
3707230--3707290	22	2.9	21	86	11	88	90	8	1	0	0.53
3707230--3707290	32	1.9	31	93	3	104	90	8	1	0	0.53
3707230--3707290	14	4.5	13	84	15	79	90	8	1	0	0.53
3707233--3707304	16	4.5	15	80	16	65	86	6	6	0	0.72
3707230--3707304	20	3.7	20	81	10	71	86	6	6	0	0.70
3707230--3707307	10	7.1	11	82	8	63	85	6	7	0	0.73
3708307--3708717	94	4.3	94	88	3	549	26	30	16	26	1.97
3708691--3709119	62	7.0	62	83	3	492	24	25	20	30	1.99
3708661--3709122	123	3.8	123	84	4	566	24	26	20	29	1.99
3708973--3709261	158	1.8	161	87	3	442	26	27	16	28	1.97
3709133--3709633	60	8.2	60	82	5	535	27	28	18	25	1.98
3709133--3709633	183	2.7	182	85	2	666	27	28	18	25	1.98
3709133--3709634	243	2.1	243	86	1	702	27	28	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3709929--3709985	21	2.8	21	81	2	71	36	12	19	31	1.89
3710031--3710056	13	2.0	13	100	0	52	38	15	15	30	1.88
3710013--3710075	32	2.0	32	90	6	101	41	15	14	28	1.87
3712274--3712322	21	2.3	21	79	6	55	57	4	16	22	1.56
3716413--3716615	79	2.6	79	82	3	221	30	15	28	25	1.96
3716567--3716638	28	2.6	28	88	0	99	23	19	34	22	1.96
3716627--3716963	52	6.4	52	67	17	185	32	12	25	29	1.92
3716783--3716853	27	2.6	27	88	2	97	22	21	32	23	1.98
3716513--3716905	107	3.7	106	70	13	320	31	14	26	27	1.95
3716571--3716963	212	1.9	212	90	3	639	31	13	26	28	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23