genome.fa.s113.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold113
Parameters: 2 7 7 80 10 50 1000
Length:  3764034

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  6  of  23  ( 2678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
825044--825392	158	2.2	158	84	6	456	27	25	14	33	1.94
829608--829633	13	2.0	13	100	0	52	38	15	15	30	1.88
831014--831185	79	2.2	79	82	8	215	33	13	22	29	1.93
831046--831232	79	2.4	78	78	7	200	34	13	24	27	1.93
831219--831335	51	2.3	52	82	5	139	37	12	18	30	1.89
831456--831576	51	2.4	51	87	0	170	29	12	29	28	1.93
833876--833915	20	2.0	20	95	0	71	42	10	15	32	1.79
833877--833944	33	2.1	33	88	5	102	44	13	14	27	1.83
833897--833926	13	2.3	13	94	0	51	43	13	16	26	1.85
835768--835831	33	1.9	33	100	0	128	31	12	12	43	1.80
835773--835852	33	2.4	33	85	4	99	32	16	11	40	1.84
842151--842191	7	5.9	7	97	0	73	0	26	0	73	0.84
843332--843382	22	2.3	21	75	15	50	35	0	3	60	1.15
844549--844610	11	5.8	11	71	19	51	61	1	0	37	1.06
844541--844603	31	2.0	31	93	0	108	58	0	0	41	0.98
844836--844876	21	2.0	20	86	9	57	58	2	0	39	1.11
844894--844955	18	3.8	16	76	14	56	64	0	1	33	1.03
844894--844955	16	3.8	15	75	21	54	64	0	1	33	1.03
848333--848378	21	2.1	22	92	4	76	32	10	23	32	1.90
848955--848981	4	6.8	4	100	0	54	77	0	0	22	0.76
849729--849787	27	2.2	27	85	8	77	50	0	5	44	1.24
851781--851845	33	2.0	33	84	6	87	32	13	20	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
861811--861841	15	2.1	15	93	0	53	48	16	22	12	1.80
863856--863933	20	3.7	20	74	15	75	26	15	15	42	1.87
865697--865743	23	2.0	23	100	0	94	31	4	12	51	1.59
866472--866496	13	1.9	13	100	0	50	36	16	16	32	1.90
866453--866514	31	2.0	32	90	3	99	37	16	16	30	1.90
867973--868013	21	1.9	21	85	5	55	26	19	0	53	1.45
873542--873597	25	2.3	25	81	6	62	26	3	0	69	1.04
879063--879126	30	2.1	31	88	2	94	28	12	10	48	1.75
883150--883278	52	2.5	52	93	0	213	31	17	15	35	1.91
883150--883299	52	2.9	52	86	4	187	32	16	16	34	1.92
883339--883405	33	2.0	33	88	0	98	40	14	11	32	1.83
883361--883385	13	1.9	13	100	0	50	32	16	16	36	1.90
884089--884167	29	2.8	29	84	1	97	59	13	8	17	1.59
886112--886142	16	2.0	15	93	6	53	19	0	3	77	0.90
887582--887870	138	2.1	138	96	0	526	14	24	13	47	1.80
888180--888835	334	2.0	330	90	1	1035	41	16	22	19	1.90
888774--891078	42	54.7	42	80	3	1746	35	17	30	15	1.92
893310--893335	13	2.0	13	100	0	52	30	15	15	38	1.88
893290--893353	32	2.0	33	90	3	103	28	14	15	42	1.86
895406--895448	20	2.1	20	82	4	50	9	27	44	18	1.80
897972--898002	15	2.1	15	93	0	53	12	22	16	48	1.80
902072--902097	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
902052--902115	32	2.0	33	90	3	103	28	14	15	42	1.86
913664--913707	8	5.4	8	81	13	54	18	0	0	81	0.68
914752--915106	71	5.1	69	63	21	186	14	22	12	49	1.77
914691--915113	138	3.1	138	94	1	740	14	22	13	49	1.78
923021--923059	7	5.4	7	96	3	69	12	0	2	84	0.72
923556--923593	20	1.9	20	84	10	51	84	5	10	0	0.77
925220--925648	155	2.8	153	78	6	434	24	16	20	38	1.92
930126--930196	29	2.4	29	81	6	90	35	15	16	32	1.91
930156--930241	15	5.9	15	72	9	61	37	19	10	32	1.86
930425--930461	17	2.2	16	90	4	56	43	0	2	54	1.14
932361--932409	2	24.5	2	100	0	98	51	0	0	48	1.00
932485--932516	14	2.3	14	94	0	55	37	0	3	59	1.13
932534--932575	22	2.0	22	90	4	68	57	0	0	42	0.99
932558--932613	17	3.2	17	75	22	62	58	1	0	39	1.08
933109--933143	3	12.0	3	87	6	54	71	0	0	28	0.86
933656--933728	32	2.3	32	90	4	112	38	0	9	52	1.34
933680--933728	16	3.1	16	74	11	55	40	0	6	53	1.26
934225--934253	15	1.9	15	100	0	58	27	0	0	72	0.85
934395--934437	17	2.6	16	82	7	50	51	0	0	48	1.00
934400--934439	17	2.4	17	91	0	62	57	0	0	42	0.98
940121--940244	40	3.2	39	65	23	98	39	0	7	52	1.35
940092--940247	77	2.0	78	94	1	278	41	1	7	50	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
940254--940309	15	3.9	14	74	6	58	50	0	0	50	1.00
941519--941556	19	2.0	19	89	0	58	36	0	2	60	1.11
942708--942760	26	2.0	27	82	10	65	39	0	5	54	1.24
943694--943741	25	1.9	25	95	0	87	56	6	12	25	1.59
944304--944354	20	2.6	20	90	3	77	31	17	15	35	1.92
944384--944446	33	1.9	32	84	12	83	33	9	20	36	1.85
946040--946069	3	10.0	3	92	0	51	36	0	33	30	1.58
951086--951128	20	2.2	20	100	0	86	16	37	27	18	1.92
951086--951134	20	2.5	20	93	0	71	16	36	26	20	1.93
952513--952556	22	2.0	22	95	4	81	45	4	22	27	1.72
953148--953204	19	2.9	19	86	2	78	31	15	15	36	1.90
958054--958105	19	2.7	20	87	3	79	28	15	17	38	1.90
958169--958211	14	3.1	14	89	0	68	25	25	9	39	1.85
960312--960369	21	2.8	21	89	0	80	63	0	18	17	1.31
961920--961958	13	3.0	13	84	0	51	35	10	15	38	1.81
962704--962828	52	2.4	51	94	5	223	44	5	23	27	1.75
962865--962895	16	1.9	16	93	0	53	48	3	12	35	1.58
963711--963775	32	2.0	33	87	3	96	30	15	13	40	1.86
964348--964410	32	1.9	34	90	6	103	28	14	23	33	1.94
966226--966271	22	2.1	22	84	8	58	34	10	19	34	1.87
966899--966928	13	2.3	13	94	0	51	36	16	13	33	1.88
966884--966948	33	2.0	32	88	11	96	35	13	18	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
972474--972501	13	2.2	13	100	0	56	35	14	17	32	1.90
972588--972631	21	2.1	21	91	8	72	31	22	0	45	1.53
977854--978041	78	2.4	78	79	1	189	27	14	17	41	1.87
979482--979564	40	2.1	40	95	0	148	36	16	15	31	1.91
982025--982105	20	4.0	20	78	10	92	28	0	17	54	1.43
982028--982118	20	4.4	20	77	12	78	29	1	16	52	1.51
982344--982383	20	2.0	21	90	5	64	30	0	17	52	1.45
982344--982393	21	2.5	20	86	3	64	30	2	18	50	1.58
982423--982476	21	2.7	20	85	5	81	27	0	18	53	1.45
982718--982770	21	2.6	20	85	11	72	32	3	13	50	1.59
982328--983048	287	2.5	283	76	8	671	32	5	14	46	1.68
983205--983262	21	2.8	20	79	5	71	34	3	15	46	1.63
983585--983647	21	3.0	20	74	17	58	31	1	19	47	1.59
983700--983751	21	2.5	21	79	14	63	32	3	15	48	1.63
983773--983831	20	2.9	21	75	9	68	35	5	11	47	1.62
983887--983982	21	4.7	20	83	12	124	36	0	9	54	1.33
983887--983982	41	2.3	41	98	0	183	36	0	9	54	1.33
985649--985698	21	2.5	20	87	6	73	34	2	18	46	1.60
985767--985842	10	7.4	10	72	16	57	31	1	6	60	1.30
985763--985842	21	3.9	20	83	4	106	32	1	6	60	1.30
988817--988875	29	2.1	29	84	9	77	37	15	5	42	1.69
989637--989681	23	2.0	23	82	8	56	2	11	4	82	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
989828--989879	26	1.9	27	84	7	70	0	5	13	80	0.88
989909--989980	33	2.2	32	78	11	76	5	20	8	65	1.40
990111--990187	25	3.0	25	70	24	70	14	19	11	54	1.70
991391--991846	42	10.9	42	74	7	255	40	16	24	17	1.90
991355--991708	84	4.2	84	76	7	306	40	18	24	16	1.90
991571--991877	84	3.7	83	75	5	253	42	14	22	20	1.89
991363--991881	126	4.1	126	76	7	358	41	16	23	18	1.90
991570--991880	42	7.4	42	76	6	184	42	14	22	20	1.89
991989--994439	44	55.9	44	69	11	772	40	14	23	21	1.89
992157--993721	88	17.8	88	74	9	985	41	13	23	21	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23