genome.fa.s113.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold113
Parameters: 2 7 7 80 10 50 1000
Length:  3764034

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  23  of  23  ( 2678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3719335--3719360	13	2.0	13	100	0	52	38	15	15	30	1.88
3719400--3719467	19	3.9	18	76	23	83	38	14	11	35	1.83
3719422--3719446	13	1.9	13	100	0	50	32	16	16	36	1.90
3719403--3719465	32	2.0	32	96	0	117	36	15	12	34	1.86
3719523--3719579	21	2.7	21	97	0	105	36	19	10	33	1.86
3722302--3722350	20	2.4	20	93	3	80	30	4	20	44	1.70
3723083--3723146	32	2.0	33	87	3	94	40	15	14	29	1.86
3723895--3724150	123	2.1	123	86	2	363	23	25	19	32	1.97
3723895--3724151	62	4.2	62	85	2	331	23	25	19	32	1.97
3724225--3724429	42	4.8	42	72	12	159	20	23	11	43	1.85
3727394--3727817	131	3.3	129	85	2	544	28	25	12	33	1.92
3735051--3735182	20	6.6	20	66	14	74	28	14	15	41	1.86
3736913--3736940	4	7.0	4	100	0	56	75	0	0	25	0.81
3740496--3740577	28	2.9	28	80	7	96	26	17	31	24	1.97
3740560--3740731	53	3.3	51	77	4	173	32	11	26	29	1.91
3740714--3740789	27	2.8	28	88	6	102	21	21	34	23	1.97
3743190--3743244	20	2.8	20	100	0	110	40	10	14	34	1.81
3743282--3743307	13	2.0	13	100	0	52	38	15	15	30	1.88
3743261--3743327	33	2.0	33	88	0	98	43	16	14	25	1.86
3743347--3743414	19	3.9	18	76	23	83	38	14	11	35	1.83
3743369--3743393	13	1.9	13	100	0	50	32	16	16	36	1.90
3743350--3743412	32	2.0	32	96	0	117	36	15	12	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3743470--3743526	21	2.7	21	97	0	105	36	19	10	33	1.86
3743990--3745001	55	18.4	55	90	4	1511	21	19	30	28	1.98
3743990--3744995	165	6.1	165	94	2	1695	20	20	30	28	1.98
3744231--3744319	29	3.2	29	67	20	89	19	19	33	28	1.96
3744859--3744948	26	3.3	26	68	14	83	21	17	32	28	1.96
3745977--3746029	1	53.0	1	80	0	61	0	3	5	90	0.54
3758411--3758492	28	2.9	28	80	7	96	26	17	31	24	1.97
3758475--3758646	53	3.3	51	77	4	173	32	11	26	29	1.91
3758629--3758704	27	2.8	28	88	6	102	21	21	34	23	1.97
3761175--3761200	13	2.0	13	100	0	52	38	15	15	30	1.88
3761154--3761220	33	2.0	33	88	0	98	43	16	14	25	1.86
3761240--3761307	19	3.9	18	76	23	83	38	14	11	35	1.83
3761262--3761286	13	1.9	13	100	0	50	32	16	16	36	1.90
3761243--3761305	32	2.0	32	96	0	117	36	15	12	34	1.86
3761363--3761419	21	2.7	21	97	0	105	36	19	10	33	1.86
3761425--3761456	16	2.0	16	100	0	64	6	6	0	87	0.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23

The End!