genome.fa.s113.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold113
Parameters: 2 7 7 80 10 50 1000
Length:  3764034

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  3  of  23  ( 2678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
356247--356698	106	4.3	104	91	5	646	34	11	34	19	1.89
356642--356820	62	2.8	63	83	9	199	26	17	31	24	1.97
356676--356820	31	4.7	31	83	10	172	24	18	31	25	1.98
356829--356853	9	2.8	9	100	0	50	8	0	0	92	0.40
365075--365194	52	2.3	52	95	0	213	30	17	18	34	1.94
365075--365214	52	2.7	51	88	4	201	31	17	18	32	1.94
365203--365227	13	1.9	13	100	0	50	36	16	16	32	1.90
365289--365313	13	1.9	13	100	0	50	32	16	16	36	1.90
365267--365333	33	2.0	33	88	0	98	40	13	11	34	1.81
365371--365412	21	2.0	21	90	0	66	35	14	14	35	1.86
365547--365795	55	4.5	55	86	3	331	20	22	28	27	1.99
365547--365786	109	2.2	111	89	3	369	19	23	28	28	1.98
365712--365955	95	2.6	94	92	2	409	25	20	30	24	1.98
365607--366756	303	3.6	298	78	14	1100	23	20	29	26	1.99
365901--366089	55	3.4	55	84	6	247	22	20	28	28	1.98
366109--366876	55	13.5	55	84	8	888	23	20	29	26	1.99
366017--366192	94	1.9	94	90	2	282	24	19	30	25	1.98
366109--366846	168	4.3	167	87	7	955	23	21	28	26	1.99
367815--368052	79	3.0	78	91	1	377	31	15	25	27	1.95
368004--368079	27	2.8	28	84	9	95	22	19	32	25	1.97
369290--369425	35	3.9	34	98	1	254	19	30	5	44	1.74
369416--369455	14	2.9	13	82	10	53	22	0	0	77	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370303--370749	31	14.2	31	84	7	537	22	31	14	30	1.94
370307--370749	95	4.7	93	84	7	538	23	31	15	30	1.95
370303--370750	126	3.6	125	86	5	593	22	31	14	31	1.94
370829--370931	27	3.9	27	88	5	156	20	40	15	23	1.90
370829--370930	52	1.9	53	90	2	161	20	41	15	22	1.90
370965--371031	33	2.0	33	94	0	116	26	35	17	19	1.94
371031--371819	91	8.5	91	87	6	820	25	26	18	30	1.98
371260--371961	49	14.5	49	80	8	758	24	25	18	31	1.97
371252--372013	100	7.8	99	85	6	816	24	25	18	32	1.97
371260--371961	148	4.8	147	82	7	776	24	25	18	31	1.97
372780--372845	33	2.0	33	88	5	98	31	15	13	39	1.86
372779--372845	20	3.7	20	69	29	60	32	14	13	38	1.86
382105--382130	13	2.0	13	100	0	52	38	15	15	30	1.88
384021--384169	52	2.9	51	89	4	235	30	17	18	32	1.94
384158--384182	13	1.9	13	100	0	50	36	16	16	32	1.90
384624--384649	13	2.0	13	100	0	52	38	15	15	30	1.88
386871--386915	21	2.1	21	84	8	56	53	4	20	22	1.63
388719--388749	15	2.1	15	93	0	53	48	16	22	12	1.80
390763--390838	20	3.5	20	73	16	71	26	14	15	43	1.85
390829--390866	13	2.9	13	92	0	58	34	15	15	34	1.90
393396--393421	13	2.0	13	100	0	52	38	15	15	30	1.88
398123--398174	28	1.9	26	88	7	77	26	25	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398091--398718	80	7.9	79	85	2	740	28	25	12	33	1.93
398602--398831	108	2.1	108	80	4	259	26	26	14	32	1.94
398523--398907	187	2.1	185	81	5	463	28	24	13	34	1.93
398365--399065	345	2.0	345	80	4	806	27	24	12	35	1.92
398706--399154	158	2.8	156	83	4	542	28	24	12	34	1.92
398709--399162	79	5.7	79	80	5	452	28	24	11	34	1.91
402330--402424	32	2.9	32	92	1	154	28	14	15	41	1.87
402328--402446	19	6.7	19	71	24	91	29	14	17	38	1.89
402377--402405	13	2.2	13	100	0	58	31	17	13	37	1.89
402491--402521	13	2.4	13	94	0	53	35	16	12	35	1.87
402475--402541	33	2.0	32	88	11	100	35	13	17	32	1.89
402576--402613	20	2.0	20	94	5	69	36	10	15	36	1.82
404088--404139	19	2.6	21	90	6	81	32	19	9	38	1.84
406023--406090	34	2.0	34	100	0	136	35	20	23	20	1.96
410731--410766	13	2.8	13	91	4	56	72	2	0	25	0.98
411013--411057	18	2.4	20	75	24	53	51	2	0	46	1.13
411181--411212	16	1.9	17	93	6	57	28	0	0	71	0.86
410348--411630	694	1.9	674	83	9	1675	45	6	4	43	1.49
411426--411455	13	2.2	14	94	5	53	73	0	0	26	0.84
411945--412039	39	2.5	38	81	10	106	61	0	2	36	1.08
411995--412060	21	3.2	21	77	18	68	57	0	1	40	1.08
412020--412055	18	1.9	19	94	5	65	69	0	2	27	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
420577--420612	2	18.0	2	100	0	72	50	0	0	50	1.00
421412--421453	2	21.5	2	85	4	59	2	2	47	47	1.28
423000--423055	14	3.7	15	83	7	69	55	0	16	28	1.41
423947--423975	2	14.5	2	100	0	58	48	0	0	51	1.00
424908--425006	50	2.0	50	85	0	135	23	19	16	41	1.90
425734--425788	20	2.7	21	82	5	76	41	12	10	34	1.78
426226--426271	20	2.2	21	88	3	67	45	8	8	36	1.66
426555--426622	21	3.3	21	77	4	75	27	26	4	41	1.75
426610--426645	17	2.1	18	89	5	56	16	33	0	50	1.46
428151--428186	10	3.6	10	85	14	56	44	0	22	33	1.53
431931--431974	21	2.1	21	83	8	54	25	31	4	38	1.76
433541--433579	13	3.0	13	96	0	69	35	15	17	30	1.91
435657--435694	15	2.5	15	91	0	58	13	21	15	50	1.78
437496--437540	21	2.1	21	84	8	56	22	20	4	53	1.63
437674--437706	15	2.1	16	88	5	50	30	9	3	57	1.45
439767--439792	13	2.0	13	100	0	52	30	15	15	38	1.88
439747--439810	32	2.0	33	87	3	94	28	14	17	40	1.88
442093--442136	22	2.1	21	91	8	72	45	6	9	38	1.63
442354--442408	20	2.8	20	91	0	83	34	9	18	38	1.82
442837--442908	36	2.0	36	89	2	110	33	11	30	25	1.90
444504--444561	21	2.7	22	80	15	68	51	1	25	20	1.57
447607--447650	20	2.1	22	91	8	74	29	9	20	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
447705--447730	13	2.0	13	100	0	52	30	15	15	38	1.88
448376--448456	39	2.1	39	85	2	108	33	28	6	32	1.82
450306--450344	13	3.0	13	88	0	60	35	12	17	33	1.88
456354--456397	20	2.1	22	91	8	74	29	9	20	40	1.83
456452--456477	13	2.0	13	100	0	52	30	15	15	38	1.88
456922--456964	21	2.0	21	86	0	59	44	2	27	25	1.66
457078--457118	21	2.0	21	85	0	55	46	2	21	29	1.64
457794--457837	22	2.1	21	91	8	72	45	6	9	38	1.63
458054--458108	20	2.8	20	97	0	101	32	10	20	36	1.87
458539--458609	36	2.0	35	86	2	97	33	12	26	26	1.92
460976--461030	20	2.7	21	77	5	67	45	16	9	29	1.78
461100--461164	33	2.0	33	87	0	94	36	13	13	35	1.85
461132--461181	20	2.5	20	81	12	59	30	16	16	38	1.90
462608--462670	33	1.9	33	87	3	92	28	12	22	36	1.91
463204--463246	20	2.2	20	86	0	59	25	37	2	34	1.69
465139--465176	13	2.9	13	80	11	51	39	18	13	28	1.88
471208--471233	13	2.0	13	100	0	52	38	15	15	30	1.88
471186--471253	33	2.1	32	91	8	111	32	16	16	35	1.91
471322--471346	13	1.9	13	100	0	50	36	16	16	32	1.90
471305--471367	33	1.9	32	87	3	90	30	15	20	33	1.94
473814--473880	25	2.6	26	86	9	84	23	14	29	31	1.95
473716--473947	122	1.9	121	85	7	326	33	10	23	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476477--476529	20	2.6	21	90	3	81	33	16	9	39	1.81
480370--480487	51	2.3	50	82	4	146	30	11	27	30	1.92
480333--480618	130	2.2	130	88	4	423	32	13	25	27	1.93
480500--480620	52	2.4	51	87	5	172	32	12	27	28	1.93
482920--483013	20	4.7	20	81	15	113	42	13	15	27	1.85
483035--483075	20	2.0	21	90	4	66	41	14	14	29	1.86
483530--483964	79	5.5	78	81	5	453	35	10	24	29	1.89
483530--483914	159	2.4	159	84	6	492	35	10	25	29	1.89
483530--483964	158	2.7	159	81	7	508	35	10	24	29	1.89
487074--487142	27	2.6	27	100	0	138	23	20	33	23	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23