genome.fa.s113.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold113
Parameters: 2 7 7 80 10 50 1000
Length:  3764034

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  7  of  23  ( 2678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
992199--993760	132	11.8	132	79	4	1459	41	13	23	21	1.89
992059--994414	132	17.9	131	73	9	1216	40	14	23	21	1.89
994314--994420	38	2.7	39	78	10	110	41	20	20	17	1.91
994825--994850	13	2.0	13	100	0	52	38	15	15	30	1.88
997066--997110	21	2.1	21	84	8	56	53	4	20	22	1.63
998923--998952	15	2.0	15	93	0	51	50	16	20	13	1.78
1001023--1001048	13	2.0	13	100	0	52	30	15	15	38	1.88
1002678--1002780	46	2.2	46	96	1	188	23	10	12	53	1.69
1003592--1003648	19	3.0	18	80	10	69	40	21	12	26	1.88
1004414--1004748	88	3.8	87	76	10	252	41	16	21	20	1.90
1004780--1004895	47	2.4	48	79	1	135	43	18	18	19	1.89
1005942--1006010	20	3.3	20	75	11	66	43	13	15	27	1.84
1007165--1007206	22	1.9	22	85	0	57	7	11	2	78	1.04
1011938--1012072	50	2.7	50	89	0	216	42	13	16	27	1.85
1012414--1012443	8	3.8	8	95	0	51	23	6	0	70	1.11
1012742--1013213	42	11.2	42	69	17	214	43	11	24	21	1.85
1012626--1013137	208	2.5	207	83	7	614	43	11	24	20	1.85
1012976--1013246	41	6.5	42	79	9	254	41	12	23	21	1.88
1012770--1013246	44	11.4	41	73	14	316	41	11	24	21	1.87
1012770--1013247	85	5.7	82	73	13	316	41	11	24	21	1.87
1013218--1014393	62	18.9	62	85	2	1377	30	18	25	24	1.98
1014245--1014585	170	2.0	170	91	2	551	31	19	24	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1014439--1015042	62	9.7	62	85	2	672	32	18	23	25	1.97
1017235--1017281	21	2.3	21	82	13	62	42	14	17	25	1.87
1018121--1018249	52	2.5	52	92	0	213	29	18	17	34	1.94
1018121--1018269	52	2.9	52	88	2	210	30	18	17	33	1.94
1018258--1018282	13	1.9	13	100	0	50	36	16	16	32	1.90
1018325--1018422	19	5.8	18	71	28	90	36	17	12	33	1.87
1018344--1018400	13	3.9	13	76	24	60	33	17	14	35	1.90
1018323--1018420	32	3.0	32	96	1	178	35	17	12	34	1.87
1019283--1019983	49	14.8	52	75	15	423	32	17	24	25	1.97
1019479--1019546	21	3.2	21	68	25	61	30	16	26	26	1.96
1019332--1019983	92	7.0	91	88	7	731	32	17	24	25	1.97
1019385--1019984	233	2.6	231	90	4	923	32	18	24	25	1.97
1019384--1019983	184	3.3	184	86	8	812	32	18	24	25	1.97
1020199--1020813	62	9.9	62	83	4	758	32	19	23	24	1.98
1020199--1020811	125	4.9	125	85	3	778	32	19	23	24	1.98
1020199--1020810	187	3.3	187	86	3	844	32	19	23	24	1.98
1026903--1027336	79	5.5	79	82	4	439	34	11	24	29	1.91
1026868--1027337	158	3.0	155	81	7	491	33	11	26	28	1.92
1030709--1030767	28	2.1	29	83	3	75	40	15	3	40	1.64
1031381--1031407	13	2.1	13	100	0	54	29	14	14	40	1.86
1031391--1031443	19	2.7	19	82	2	70	30	16	16	35	1.92
1031477--1031539	33	1.9	33	84	12	85	34	12	17	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1032989--1033051	19	3.3	19	68	24	60	3	15	9	71	1.25
1033814--1033981	62	2.7	62	90	0	282	38	19	19	22	1.93
1034750--1034774	8	3.1	8	100	0	50	36	12	0	52	1.39
1034745--1034792	16	2.9	17	78	6	62	35	14	4	45	1.64
1035763--1035802	20	2.0	20	90	0	62	50	10	7	32	1.64
1035798--1035825	11	2.5	11	100	0	56	50	10	0	39	1.37
1037367--1037413	22	2.1	22	84	7	60	53	8	4	34	1.51
1039340--1039490	76	2.0	76	82	2	187	37	18	15	28	1.92
1040845--1040876	16	2.0	16	93	0	55	3	18	0	78	0.89
1044043--1044211	64	2.8	62	82	9	190	52	0	1	46	1.08
1044045--1044197	30	5.0	30	80	10	159	50	0	1	47	1.09
1049540--1049566	13	2.1	13	100	0	54	29	14	14	40	1.86
1049632--1049680	20	2.5	20	75	0	53	38	10	18	32	1.84
1051266--1051299	3	11.3	3	87	0	50	38	0	32	29	1.58
1055491--1055528	13	2.9	13	92	0	67	31	15	21	31	1.94
1058091--1058117	13	2.1	13	100	0	54	29	14	14	40	1.86
1058102--1058157	19	2.9	19	86	2	76	30	16	16	37	1.90
1059656--1059996	113	3.0	114	81	7	338	43	10	9	36	1.70
1064284--1064336	19	2.7	20	85	2	72	37	16	15	30	1.90
1064254--1064316	34	1.9	34	87	6	94	34	15	14	34	1.88
1074789--1074872	29	2.8	30	75	22	88	52	13	9	25	1.70
1074789--1074936	59	2.6	58	83	5	176	52	14	9	24	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1074869--1074938	28	2.5	27	77	13	70	51	14	8	25	1.70
1074789--1075052	57	4.6	58	76	10	213	49	14	9	26	1.73
1074848--1075062	113	1.9	115	80	7	251	47	13	10	27	1.77
1082775--1082847	20	3.7	19	87	7	85	28	15	17	38	1.90
1082892--1082921	13	2.3	13	94	0	51	36	16	13	33	1.88
1090731--1090892	80	2.0	80	98	0	315	29	9	15	45	1.78
1091123--1091158	13	2.8	13	86	0	54	33	16	13	36	1.89
1092559--1092614	19	2.9	19	86	2	85	35	12	21	30	1.90
1093299--1093352	26	2.1	26	85	0	72	24	20	5	50	1.69
1101406--1101454	19	2.5	20	83	3	64	36	10	18	34	1.85
1103599--1103629	13	2.4	13	94	0	53	35	12	19	32	1.90
1103612--1103685	20	3.7	20	87	0	103	35	18	13	32	1.90
1106335--1106365	13	2.4	13	94	0	53	38	12	16	32	1.86
1112505--1112535	13	2.4	13	94	0	53	41	12	16	29	1.85
1112482--1112551	33	2.1	33	86	0	95	37	17	12	32	1.87
1113949--1113987	20	2.0	20	89	0	60	30	15	15	38	1.88
1114720--1114820	43	2.3	43	93	0	175	27	20	17	33	1.96
1114806--1114859	20	2.7	20	82	0	63	38	12	14	33	1.85
1116214--1116270	19	2.9	19	86	2	78	33	15	15	35	1.90
1119260--1119290	15	2.1	15	93	0	53	48	16	22	12	1.80
1121296--1121375	20	3.8	20	75	15	61	26	15	15	43	1.85
1121361--1121399	13	3.0	13	96	0	69	30	17	15	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1123203--1123437	108	2.2	109	94	3	420	38	9	25	26	1.86
1124063--1124088	13	2.0	13	100	0	52	38	15	15	30	1.88
1125928--1126125	99	2.0	99	100	0	396	32	7	20	40	1.79
1126277--1126385	54	2.0	54	94	0	191	34	12	17	34	1.88
1126450--1126503	20	2.8	19	80	5	72	31	16	14	37	1.89
1126953--1127626	352	1.9	353	86	3	966	27	17	19	36	1.94
1129261--1129290	13	2.4	13	94	5	53	6	13	6	73	1.24
1131097--1131612	79	6.5	79	82	5	571	34	13	24	27	1.93
1131107--1131612	157	3.2	155	81	5	581	33	13	24	27	1.93
1131097--1131612	236	2.2	234	83	6	632	34	13	24	27	1.93
1131550--1131715	51	3.3	51	86	1	226	33	9	25	31	1.87
1131727--1131956	51	4.6	51	82	4	247	34	11	25	28	1.90
1131474--1131893	177	2.4	178	85	5	564	33	11	25	29	1.91
1131744--1131956	102	2.1	101	84	4	277	36	10	23	29	1.88
1134215--1134289	20	3.8	19	87	7	105	42	13	16	28	1.85
1135142--1135181	15	2.5	17	84	12	57	40	5	2	52	1.37
1141887--1142003	51	2.3	51	85	2	155	27	23	11	37	1.90
1141936--1142159	79	2.8	78	81	3	225	26	25	14	34	1.94
1141824--1142080	130	2.0	130	84	1	336	27	23	12	36	1.91
1141824--1142296	209	2.3	208	82	2	547	26	22	13	37	1.92
1142096--1142204	51	2.1	51	86	3	157	25	22	12	39	1.89
1150054--1150163	55	2.0	55	96	0	202	20	19	16	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1150374--1150398	13	1.9	13	100	0	50	32	16	16	36	1.90
1150355--1150418	33	1.9	33	83	0	83	34	18	14	32	1.91
1150448--1150502	19	2.8	20	80	5	67	34	14	18	32	1.91
1151429--1151486	28	2.1	28	83	6	73	27	18	25	27	1.98
1152947--1152986	13	3.1	13	81	0	53	42	7	12	37	1.71
1153318--1153364	23	2.0	23	100	0	94	61	4	17	17	1.49
1153763--1153787	13	1.9	13	100	0	50	36	16	16	32	1.90
1153743--1153809	33	2.0	33	88	0	98	32	11	14	40	1.83
1153850--1153874	13	1.9	13	100	0	50	32	16	16	36	1.90
1162503--1162527	13	1.9	13	100	0	50	32	16	16	36	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23