genome.fa.s141.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold141
Parameters: 2 7 7 80 10 50 1000
Length:  2772588

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  11  of  18  ( 2069 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1769808--1770160	155	2.3	153	79	4	370	39	20	15	24	1.92
1771576--1771623	22	2.1	24	88	7	73	2	16	12	68	1.29
1772360--1772429	24	2.8	26	79	12	74	5	5	11	77	1.12
1772363--1772429	25	2.6	26	83	11	84	5	5	11	76	1.15
1772384--1772446	24	2.6	25	85	12	78	6	7	6	79	1.06
1772385--1772453	24	3.0	23	76	19	63	7	8	7	76	1.15
1773306--1773358	3	17.3	3	92	3	88	33	1	0	64	1.05
1773660--1776178	42	60.1	43	77	7	1346	40	17	24	17	1.91
1773660--1776184	84	30.1	84	76	4	1666	40	17	24	17	1.91
1773631--1776184	126	20.3	125	78	4	1706	40	17	24	17	1.91
1776728--1776786	32	1.9	30	83	13	75	59	10	10	20	1.58
1777064--1777089	13	2.0	13	100	0	52	30	15	15	38	1.88
1777043--1777107	32	2.0	33	93	6	114	27	12	15	44	1.82
1777043--1777107	19	3.6	19	73	26	70	27	12	15	44	1.82
1781716--1781746	15	2.1	15	93	0	53	12	22	16	48	1.80
1783550--1783594	21	2.1	21	84	8	56	22	20	4	53	1.63
1785476--1785534	32	1.9	30	83	13	75	59	10	10	20	1.58
1785799--1785823	13	1.9	13	100	0	50	32	16	16	36	1.90
1786296--1787253	44	22.5	43	70	14	480	42	16	20	20	1.89
1786298--1787253	88	11.3	82	75	11	612	42	16	20	20	1.89
1786732--1787055	130	2.5	132	79	7	383	40	15	21	21	1.91
1786994--1787257	82	3.2	80	84	5	244	43	16	19	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1787270--1787603	48	7.2	48	79	8	370	40	19	21	18	1.92
1787270--1787601	96	3.6	95	83	6	409	40	18	21	18	1.92
1787436--1787615	84	2.1	84	83	0	234	43	14	21	21	1.87
1788271--1788327	20	2.8	20	86	10	71	28	17	12	42	1.85
1789214--1789277	33	2.0	33	84	3	85	31	18	15	34	1.93
1790942--1790973	3	10.7	3	93	0	55	37	0	34	28	1.57
1797245--1797275	2	15.5	2	100	0	62	48	0	0	51	1.00
1798310--1798335	13	2.0	13	100	0	52	38	15	15	30	1.88
1800556--1800600	21	2.1	21	84	8	56	53	4	20	22	1.63
1802404--1802442	15	2.6	15	91	0	60	51	15	20	12	1.76
1804513--1804538	13	2.0	13	100	0	52	30	15	15	38	1.88
1807082--1807107	13	2.0	13	100	0	52	38	15	15	30	1.88
1808039--1808100	32	1.9	32	87	9	90	33	14	12	38	1.84
1809444--1809474	9	3.4	9	95	0	53	0	16	0	83	0.64
1810699--1810951	79	3.2	77	78	8	240	29	24	10	35	1.89
1811225--1811287	33	1.9	32	84	9	83	36	14	11	38	1.81
1811362--1811387	10	2.6	10	100	0	52	19	19	11	50	1.77
1817954--1818080	52	2.4	53	90	2	204	29	17	17	36	1.93
1817954--1818099	52	2.8	51	86	4	193	30	17	17	34	1.93
1818088--1818112	13	1.9	13	100	0	50	36	16	16	32	1.90
1818155--1818252	19	5.8	18	69	28	81	35	17	13	33	1.88
1818150--1818250	32	3.1	32	94	1	175	34	17	12	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1818174--1818230	13	3.9	13	74	24	51	31	17	15	35	1.92
1820625--1820652	14	2.0	14	100	0	56	57	7	14	21	1.61
1823855--1823893	18	2.2	19	86	9	55	20	2	0	76	0.90
1824998--1825081	28	2.9	31	77	18	99	17	19	28	34	1.95
1825057--1825320	29	9.0	29	84	5	325	21	16	33	28	1.95
1825052--1825320	59	4.6	59	90	2	398	22	15	33	28	1.95
1825057--1825320	88	3.0	88	83	4	345	21	16	33	28	1.95
1826738--1826812	17	4.4	17	82	14	84	1	1	13	84	0.76
1826738--1826817	35	2.3	34	85	6	106	1	1	13	83	0.77
1826752--1826811	31	1.9	31	93	6	104	0	1	15	83	0.73
1826747--1826813	17	4.2	16	83	12	86	0	1	13	85	0.68
1833154--1833179	13	2.0	13	100	0	52	30	15	15	38	1.88
1833134--1833197	32	2.0	33	87	3	94	29	14	14	42	1.84
1833248--1833304	20	2.8	20	86	7	80	26	15	15	42	1.87
1833821--1833906	39	2.2	40	83	8	106	31	22	5	40	1.77
1836239--1836412	84	2.1	83	81	8	201	24	18	3	53	1.60
1838448--1838473	13	2.0	13	100	0	52	30	15	15	38	1.88
1838428--1838491	32	2.0	33	90	3	103	28	14	15	42	1.86
1847155--1847281	52	2.4	53	90	2	204	29	17	17	36	1.93
1847155--1847300	52	2.8	51	86	4	193	30	17	17	34	1.93
1847289--1847313	13	1.9	13	100	0	50	36	16	16	32	1.90
1847358--1847453	13	5.7	18	68	28	77	36	17	12	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1847351--1847451	32	3.1	32	92	1	166	35	17	11	34	1.87
1848790--1848841	26	2.0	27	85	11	72	9	7	5	76	1.14
1849828--1849855	14	2.0	14	100	0	56	57	7	14	21	1.61
1853056--1853094	18	2.2	19	86	9	55	20	2	0	76	0.90
1854357--1854414	22	2.6	22	86	0	71	3	20	13	62	1.46
1854405--1854429	13	1.9	13	100	0	50	0	24	24	52	1.48
1854466--1854590	40	3.2	40	75	10	132	7	31	17	44	1.76
1854478--1854593	38	3.0	40	77	5	121	7	31	16	43	1.76
1856115--1856161	24	2.0	22	84	15	60	55	4	2	38	1.31
1857101--1857129	2	14.5	2	100	0	58	48	0	0	51	1.00
1857597--1857647	15	3.0	18	83	11	63	54	0	1	43	1.11
1857597--1857674	18	4.6	17	71	10	61	52	3	3	39	1.38
1861207--1861269	33	1.9	33	93	0	108	47	7	0	44	1.32
1861554--1861635	26	3.4	24	70	23	73	68	3	4	23	1.25
1861570--1861639	21	3.0	21	75	21	61	72	2	4	20	1.14
1865341--1865368	2	14.0	2	100	0	56	50	0	50	0	1.00
1865811--1865867	25	2.3	25	100	0	114	24	28	7	40	1.81
1865811--1865885	25	3.0	25	90	3	89	26	26	5	41	1.77
1867337--1867386	25	1.9	27	84	8	68	58	16	16	10	1.63
1871617--1871669	18	3.3	15	80	17	61	56	0	1	41	1.10
1871615--1871662	15	2.8	18	78	18	57	52	0	2	45	1.12
1874986--1875037	19	2.9	19	86	8	74	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1874944--1875037	36	2.6	35	81	10	91	54	0	0	45	0.99
1874981--1875070	19	4.6	19	71	24	55	55	0	0	44	0.99
1876752--1876799	23	2.2	21	85	7	60	60	6	2	31	1.33
1876794--1876845	24	2.2	24	82	6	61	53	0	1	44	1.11
1876794--1876861	8	8.5	8	73	16	52	52	0	1	45	1.09
1876794--1876876	32	2.6	32	81	9	89	53	2	1	43	1.21
1877083--1877119	15	2.4	16	90	9	67	32	5	13	48	1.65
1877334--1877408	31	2.4	32	84	6	100	60	0	0	40	0.97
1877388--1877426	21	1.9	20	84	5	51	66	2	0	30	1.05
1877333--1877438	14	6.9	15	70	16	56	61	0	0	37	1.03
1884308--1884355	22	2.2	23	82	14	57	35	0	6	58	1.23
1886705--1886751	24	2.0	23	84	12	60	53	4	0	42	1.20
1887431--1887476	23	2.0	23	83	8	58	54	2	2	41	1.25
1888127--1888168	11	3.8	11	81	6	50	38	0	0	61	0.96
1891714--1891761	24	2.0	24	84	8	62	54	2	0	43	1.12
1892663--1892705	18	2.2	20	92	8	72	41	0	0	58	0.98
1896527--1896595	3	25.0	3	80	19	64	27	2	0	69	1.02
1896539--1896595	14	3.6	17	84	13	61	26	0	0	73	0.83
1896532--1896571	11	3.5	11	93	6	62	32	2	0	65	1.06
1896523--1896565	14	3.1	14	80	12	54	34	4	0	60	1.17
1896567--1896592	7	3.7	7	100	0	52	15	0	0	84	0.62
1897160--1897930	42	18.1	42	72	9	445	35	17	28	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1897162--1897430	83	3.2	84	81	2	299	34	19	27	18	1.95
1897128--1897782	127	5.2	124	73	7	444	34	18	28	18	1.94
1897162--1897471	167	1.8	169	81	2	383	33	19	27	19	1.96
1897381--1897790	169	2.4	169	80	4	409	33	17	29	19	1.94
1898598--1898627	13	2.3	13	94	0	51	30	13	13	43	1.82
1898643--1898730	20	4.8	20	75	21	93	27	15	15	40	1.88
1898680--1898743	13	5.4	13	75	21	77	28	15	15	40	1.88
1898660--1898744	33	2.6	33	94	0	152	28	17	15	38	1.90
1900902--1901001	28	3.6	28	82	5	112	21	30	22	27	1.98
1900851--1901107	135	1.9	135	92	0	433	24	24	18	32	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18