genome.fa.s141.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold141
Parameters: 2 7 7 80 10 50 1000
Length:  2772588

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  5  of  18  ( 2069 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
858385--858443	16	3.6	16	84	11	84	33	0	0	66	0.92
859061--859101	20	2.0	21	85	4	57	63	0	4	31	1.15
859081--859114	16	2.1	16	89	10	52	61	0	0	38	0.96
859880--860092	104	2.0	106	87	1	304	38	6	7	46	1.59
860205--860253	22	2.2	22	85	0	62	42	2	4	51	1.32
860228--860263	16	2.2	16	90	0	54	41	0	2	55	1.14
860921--860992	35	2.1	34	84	7	92	31	1	4	62	1.23
860949--861002	19	2.9	19	78	10	60	35	0	3	61	1.14
860955--861010	29	2.0	28	82	10	69	35	0	5	58	1.21
862692--862752	32	1.9	32	100	0	122	36	0	22	40	1.55
866326--866366	20	2.1	19	86	4	55	46	0	2	51	1.14
866319--866367	19	2.5	19	80	9	55	42	0	4	53	1.20
866363--866403	22	1.9	22	85	14	59	58	0	2	39	1.11
867294--867688	145	2.7	144	81	3	434	38	5	9	46	1.60
867880--867904	2	12.5	2	100	0	50	48	0	0	52	1.00
869477--869506	13	2.4	13	94	5	53	56	0	0	43	0.99
871103--871143	21	2.0	21	85	4	57	29	4	9	56	1.53
874119--874163	2	22.5	2	100	0	90	48	0	0	51	1.00
874214--874247	8	4.2	8	88	0	50	47	14	2	35	1.60
875095--875153	9	6.6	9	74	14	50	66	5	3	25	1.28
875068--875153	28	3.0	28	75	11	77	66	5	2	25	1.26
876564--876629	2	33.0	2	93	0	114	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
878253--878306	28	2.0	27	85	10	74	38	11	33	16	1.84
881319--881379	23	2.7	22	78	14	61	75	9	8	6	1.19
882773--882938	30	5.6	29	70	13	86	26	26	14	32	1.95
882780--882988	59	3.5	58	75	8	163	25	25	14	33	1.94
882827--882988	30	5.5	29	74	6	130	24	24	14	35	1.94
882939--883006	28	2.4	28	90	0	100	23	23	16	36	1.94
882928--883207	59	4.7	59	75	9	189	25	29	12	33	1.92
882928--883257	32	11.0	30	71	12	200	24	29	12	33	1.92
883078--883261	61	3.1	60	82	9	191	25	30	13	30	1.93
883230--883613	28	13.4	28	76	6	281	30	28	15	25	1.96
882974--883257	152	1.9	150	80	10	330	23	30	12	32	1.92
883230--883537	57	5.5	56	79	5	298	28	27	16	26	1.97
883541--883613	32	2.3	31	85	2	92	35	31	13	19	1.91
883630--883947	52	5.9	52	79	8	275	23	24	15	35	1.94
883630--883942	103	2.9	105	80	8	330	24	24	15	34	1.95
885893--886397	164	3.1	162	80	7	527	30	11	8	49	1.68
887447--888162	170	4.2	170	91	1	1011	28	13	19	38	1.89
889796--889822	13	2.1	13	100	0	54	29	14	14	40	1.86
889807--889862	19	2.8	20	89	2	78	32	16	14	37	1.88
889803--889863	20	3.1	19	81	6	77	34	14	14	36	1.87
889912--889936	13	1.9	13	100	0	50	36	16	16	32	1.90
898757--898850	20	5.1	20	67	27	73	37	14	14	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
898732--898853	53	2.3	53	97	0	226	34	14	17	33	1.90
898885--898922	20	2.0	20	94	5	69	36	10	15	36	1.82
903273--903329	22	2.6	22	82	0	69	3	17	14	64	1.41
903316--903371	22	2.5	22	91	2	85	1	16	26	55	1.51
904626--904720	8	11.2	8	71	16	59	29	1	0	69	0.95
904651--904719	14	5.6	13	74	20	60	28	1	0	69	0.97
904653--904694	11	3.8	11	93	0	66	33	2	0	64	1.07
905302--905453	43	3.6	43	78	6	123	34	17	29	18	1.94
905338--905798	84	5.5	84	78	4	419	37	17	26	18	1.93
905294--905775	42	11.4	42	73	9	207	36	17	26	18	1.93
905314--905798	169	2.9	167	80	4	519	37	17	26	18	1.93
905455--905783	126	2.6	127	72	3	306	37	17	26	18	1.93
905951--906039	44	2.0	44	88	0	133	46	13	19	21	1.84
905971--906060	44	2.1	44	87	2	119	46	14	16	22	1.83
909536--910764	613	2.0	613	98	0	2386	27	21	17	33	1.95
915513--915557	15	3.0	15	80	0	54	15	31	22	31	1.95
918419--918445	13	2.1	13	100	0	54	29	14	14	40	1.86
919330--919379	13	3.7	14	89	10	70	24	0	8	68	1.16
920816--920872	20	2.8	20	83	0	69	38	14	15	31	1.87
921621--921805	91	2.0	91	98	0	361	27	25	9	37	1.87
926637--926662	13	2.0	13	100	0	52	38	15	15	30	1.88
928878--928922	21	2.1	21	84	8	56	53	4	20	22	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
930726--930756	15	2.1	15	93	0	53	48	16	22	12	1.80
932769--932848	20	3.8	20	76	15	79	27	13	15	43	1.84
932834--932898	13	5.0	13	94	0	112	30	18	15	35	1.92
932835--932898	26	2.5	26	100	0	128	31	18	15	34	1.93
933019--933065	21	2.3	21	79	20	55	34	19	4	42	1.70
933021--933063	20	2.2	19	84	16	52	32	18	4	44	1.71
936082--936136	28	2.0	28	100	0	110	32	21	10	34	1.89
937364--937404	22	2.0	20	86	13	57	31	21	4	41	1.74
937674--937752	19	3.8	19	74	19	68	27	13	15	43	1.85
937738--937802	13	5.0	13	94	0	112	30	18	15	35	1.92
937739--937802	26	2.5	26	100	0	128	31	18	15	34	1.93
937923--937969	21	2.3	21	79	20	55	34	19	4	42	1.70
937925--937967	20	2.2	19	84	16	52	32	18	4	44	1.71
940986--941040	28	2.0	28	100	0	110	32	21	10	34	1.89
942268--942308	22	2.0	20	86	13	57	31	21	4	41	1.74
943996--944039	21	2.0	21	86	4	61	36	2	29	31	1.70
944544--944600	20	2.8	20	83	0	69	38	14	15	31	1.87
944586--944614	13	2.2	13	100	0	58	31	17	13	37	1.89
944602--944654	20	2.6	21	78	3	63	41	15	15	28	1.87
947357--947588	122	1.9	123	83	2	306	19	17	33	29	1.95
948183--948219	19	1.9	19	94	0	65	18	8	0	72	1.08
950670--951441	43	18.1	43	81	4	730	38	16	28	15	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
950670--951444	128	6.1	128	83	2	824	38	17	28	15	1.90
950670--951445	85	9.1	84	83	3	811	38	17	28	15	1.90
954927--954951	13	1.9	13	100	0	50	36	16	16	32	1.90
954907--954972	32	2.0	33	97	2	125	34	12	18	34	1.88
955013--955037	13	1.9	13	100	0	50	32	16	16	36	1.90
955046--955174	52	2.5	52	98	0	249	34	18	18	27	1.95
962102--962134	12	2.7	13	81	18	52	75	6	12	6	1.16
962103--962140	11	3.3	11	92	7	58	73	7	10	7	1.24
962369--962428	15	3.8	15	81	14	68	80	8	11	0	0.92
963432--963647	32	6.9	32	88	6	293	23	29	16	31	1.96
963425--963684	125	2.1	126	81	11	336	22	30	15	32	1.94
963683--963803	33	3.7	33	93	2	199	31	33	19	15	1.93
963861--964598	43	16.0	43	77	12	562	26	26	17	29	1.97
963808--964608	92	8.6	92	85	4	1036	25	26	17	30	1.97
964450--964599	52	2.9	52	93	0	255	22	25	18	33	1.97
977734--977798	33	2.0	33	87	0	94	6	29	15	49	1.68
978320--978380	8	6.9	8	78	17	50	18	4	0	77	0.95
978309--978373	22	3.0	22	88	4	78	18	4	0	76	0.95
978326--978373	14	3.5	14	85	5	71	18	4	0	77	0.93
978320--978378	27	2.2	27	90	0	91	18	5	0	76	0.97
980758--980937	50	3.7	51	82	8	223	20	23	18	37	1.94
980759--980988	47	4.8	47	79	9	218	20	24	16	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
981064--981416	84	4.2	84	78	5	372	19	30	15	35	1.92
981108--981510	168	2.4	168	83	4	492	18	32	15	33	1.92
982709--983000	151	1.9	152	82	7	362	28	8	7	55	1.58
984114--984552	171	2.6	171	87	1	605	28	12	18	40	1.88
995184--995233	21	2.3	21	80	10	57	56	4	18	22	1.58
996085--996143	32	1.9	30	86	13	84	59	11	10	18	1.60
996424--996449	13	2.0	13	100	0	52	30	15	15	38	1.88
996403--996467	32	2.0	33	93	6	114	27	12	15	44	1.82
996403--996467	19	3.6	19	73	26	70	27	12	15	44	1.82
998483--998525	20	2.1	20	82	4	50	9	27	44	18	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18