genome.fa.s141.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold141
Parameters: 2 7 7 80 10 50 1000
Length:  2772588

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  17  of  18  ( 2069 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2621967--2622034	22	3.0	22	74	12	66	44	0	0	55	0.99
2623756--2623821	22	3.0	22	68	6	53	48	0	1	50	1.10
2626361--2626437	20	3.9	19	75	14	68	42	3	6	46	1.48
2626361--2626427	19	3.5	18	74	11	62	41	2	7	47	1.47
2626555--2626600	23	2.0	22	83	4	56	41	2	8	47	1.46
2626455--2627049	314	1.9	312	95	1	1066	34	12	11	42	1.79
2626869--2626914	23	2.0	22	83	4	56	41	2	8	47	1.46
2629558--2629582	13	1.9	13	100	0	50	32	16	16	36	1.90
2629893--2629959	19	3.8	19	77	22	92	34	11	17	35	1.87
2629894--2629956	32	2.0	32	100	0	126	33	12	19	34	1.89
2629913--2629937	13	1.9	13	100	0	50	36	16	16	32	1.90
2630000--2630024	13	1.9	13	100	0	50	32	16	16	36	1.90
2635820--2635858	20	1.9	21	89	5	62	35	17	10	35	1.84
2637763--2637837	20	3.8	20	83	0	105	32	13	13	41	1.83
2637763--2637840	40	2.0	39	92	2	129	32	12	14	41	1.83
2645519--2645576	20	2.8	20	92	2	89	32	15	6	44	1.73
2647052--2647121	34	2.1	34	94	0	122	48	8	22	20	1.76
2648743--2648767	2	12.5	2	100	0	50	48	0	0	52	1.00
2650687--2650724	11	3.5	11	85	0	58	55	0	5	39	1.23
2650677--2650729	22	2.4	22	96	0	97	58	0	3	37	1.16
2651016--2651132	34	3.3	32	68	25	92	48	0	0	50	1.06
2651007--2651170	73	2.2	75	88	8	237	47	0	0	51	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2652441--2652502	20	3.0	20	78	17	74	48	0	0	51	1.00
2652442--2652489	25	2.0	24	87	4	69	45	0	0	54	0.99
2652474--2652538	28	2.4	28	78	14	75	55	0	0	44	0.99
2652803--2652844	18	2.3	18	87	0	57	61	0	2	35	1.09
2652842--2652889	15	2.8	18	78	18	57	50	0	0	50	1.00
2652826--2652889	33	1.9	34	84	9	87	50	0	0	50	1.00
2652826--2652883	15	3.6	15	78	19	55	48	0	0	51	1.00
2652982--2653016	4	8.8	4	100	0	70	22	0	0	77	0.78
2653188--2653227	15	2.6	15	92	4	62	2	25	0	72	0.97
2658252--2658287	18	2.0	18	89	10	56	58	0	0	41	0.98
2660133--2660184	25	2.0	26	81	3	61	46	0	1	51	1.12
2660140--2660199	26	2.4	25	85	2	75	43	1	1	53	1.20
2660860--2660902	22	1.9	22	81	13	52	62	0	4	32	1.15
2661872--2661909	16	2.3	17	95	4	69	34	0	0	65	0.93
2661922--2661975	15	3.5	15	82	9	56	25	3	9	61	1.43
2662177--2662215	20	2.0	20	84	0	51	41	5	0	53	1.23
2662201--2662245	18	2.4	18	81	3	54	40	2	4	53	1.33
2662241--2662294	15	3.4	15	72	22	56	40	3	1	53	1.29
2662236--2662301	33	2.0	32	97	2	123	37	3	3	56	1.30
2662247--2662302	18	3.3	18	72	23	66	41	3	3	51	1.36
2662363--2662431	27	2.4	29	78	19	83	17	0	15	66	1.25
2662407--2662440	17	1.9	18	88	5	52	26	0	11	61	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2663954--2663988	17	2.0	17	88	5	52	54	2	0	42	1.15
2663954--2664001	18	2.6	18	83	12	53	54	2	0	43	1.12
2664109--2664150	16	2.6	16	81	7	50	30	4	7	57	1.47
2665078--2665131	17	3.3	16	74	25	51	57	1	1	38	1.20
2668552--2668602	14	3.3	15	76	15	50	56	0	0	43	0.99
2668559--2668616	17	3.4	17	79	13	66	56	0	0	43	0.99
2668627--2668657	15	2.0	16	93	6	55	64	0	0	35	0.94
2669119--2669143	9	2.8	9	100	0	50	44	0	0	56	0.99
2669855--2669925	32	2.2	33	84	2	90	40	1	2	54	1.23
2669883--2669927	19	2.4	19	85	7	56	37	0	4	57	1.19
2669907--2669945	13	2.9	13	88	3	51	25	0	2	71	0.98
2671530--2671616	20	4.5	20	76	17	85	65	0	22	11	1.25
2671861--2671908	23	2.0	23	84	11	62	66	0	16	16	1.25
2672408--2672530	40	3.1	40	82	2	140	43	8	9	39	1.68
2675613--2675701	41	2.2	41	86	6	119	68	12	2	16	1.30
2676881--2676944	33	1.9	33	87	12	96	35	18	9	35	1.83
2676906--2676943	20	1.9	20	88	0	58	42	18	7	31	1.79
2676974--2677046	19	3.7	19	87	5	83	36	17	16	28	1.92
2677564--2677633	17	4.1	17	74	7	70	32	31	1	34	1.67
2679514--2679555	13	3.2	13	89	0	57	47	16	9	26	1.77
2683825--2683851	13	2.1	13	100	0	54	40	14	14	29	1.86
2683806--2683870	33	2.0	32	88	8	96	41	16	15	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2685172--2685209	13	2.9	13	92	0	58	47	0	2	50	1.15
2687123--2687178	29	1.9	29	89	7	87	48	3	10	37	1.56
2689542--2689598	9	6.0	9	75	8	51	5	12	3	78	1.03
2689542--2689602	19	3.3	18	78	13	63	4	13	3	78	1.03
2693702--2693769	30	2.2	32	84	5	86	51	4	4	39	1.42
2702223--2702256	17	2.0	17	88	0	50	64	0	14	20	1.28
2702181--2702356	88	2.0	89	92	4	293	40	3	11	44	1.59
2703764--2703829	28	2.3	29	78	5	71	57	4	4	33	1.39
2704524--2704566	19	2.3	18	84	15	52	46	0	0	53	1.00
2705911--2705940	15	2.1	15	93	6	53	46	0	10	43	1.37
2707826--2707917	43	2.1	43	93	0	157	20	22	11	44	1.84
2709208--2709264	30	1.9	30	88	0	87	22	5	22	49	1.70
2709306--2709406	26	3.8	26	74	8	69	58	0	0	41	0.98
2709350--2709381	15	2.0	17	88	11	50	50	0	0	50	1.00
2716437--2716489	16	3.3	16	80	15	56	69	0	1	28	0.99
2716449--2716495	22	2.1	22	82	17	62	68	0	0	31	0.90
2716871--2716912	17	2.5	17	84	3	50	52	2	0	45	1.13
2717411--2717454	21	2.0	23	82	8	56	72	0	0	27	0.85
2717480--2717510	14	2.3	13	94	5	53	83	0	16	0	0.64
2717812--2717869	15	3.7	15	75	11	55	32	1	1	63	1.14
2717897--2717935	17	2.4	16	83	8	51	20	2	5	71	1.17
2717831--2717935	8	12.1	8	69	18	59	25	1	4	67	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2717939--2717983	18	2.6	19	86	13	62	31	0	0	68	0.89
2717812--2717999	27	7.3	26	66	23	69	30	1	3	64	1.19
2718701--2718752	12	4.1	12	77	20	52	44	0	0	55	0.99
2718703--2718765	23	2.6	24	79	13	67	44	0	0	55	0.99
2719400--2719436	19	1.9	19	89	10	58	51	0	0	48	1.00
2719870--2719991	36	3.5	35	76	16	101	57	3	1	37	1.25
2720910--2720958	16	3.1	15	77	16	55	59	0	0	40	0.98
2720917--2720957	16	2.4	17	88	8	57	65	0	0	34	0.93
2721360--2721413	18	2.9	19	78	10	58	55	0	0	44	0.99
2721835--2721999	74	2.2	76	79	7	176	53	9	4	33	1.52
2723614--2723673	29	2.1	29	84	6	77	46	0	0	53	1.00
2724204--2724246	16	2.7	16	81	0	50	51	6	4	37	1.50
2724271--2724315	7	6.1	7	80	10	54	57	0	0	42	0.98
2724266--2724340	17	4.6	17	79	11	77	57	4	0	38	1.18
2724271--2724315	15	3.1	14	78	9	54	57	0	0	42	0.98
2724271--2724331	24	2.6	22	79	7	68	57	1	0	40	1.08
2725259--2725304	20	2.4	18	85	10	56	34	2	0	63	1.07
2725320--2725368	14	3.5	14	76	17	57	61	2	0	36	1.08
2726283--2726363	17	4.2	17	69	27	56	39	0	0	60	0.97
2726288--2726386	32	3.0	32	74	5	81	39	0	0	60	0.97
2726291--2726340	18	2.9	17	85	5	66	38	0	0	62	0.96
2726662--2726700	3	13.0	3	94	0	69	30	0	2	66	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2728351--2728401	21	2.4	20	80	9	57	50	0	0	49	1.00
2728832--2728876	17	2.8	16	80	6	54	55	6	2	35	1.38
2729413--2729459	22	2.2	22	81	11	53	63	0	0	36	0.94
2729432--2729458	14	1.9	14	100	0	54	66	0	0	33	0.92
2733143--2733167	13	1.9	13	100	0	50	40	20	8	32	1.81
2735500--2735532	15	2.4	14	90	10	50	69	0	3	27	1.03
2739182--2739253	36	1.9	38	83	5	94	47	1	1	50	1.18
2739747--2739800	16	3.5	15	80	9	56	37	0	0	62	0.95
2740373--2740410	3	12.7	3	100	0	76	68	0	0	31	0.90
2741505--2741549	15	3.0	15	83	0	54	62	2	0	35	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18