genome.fa.s141.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold141
Parameters: 2 7 7 80 10 50 1000
Length:  2772588

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  7  of  18  ( 2069 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1160493--1160684	104	1.9	104	89	4	300	38	14	21	26	1.91
1160993--1161162	52	3.3	52	82	3	155	37	15	22	24	1.93
1160991--1161230	104	2.3	104	75	2	230	35	14	24	25	1.93
1161352--1161804	32	14.1	32	77	8	332	20	17	32	29	1.95
1161359--1161804	161	2.8	159	85	6	519	20	16	33	29	1.95
1161352--1161795	63	6.9	63	77	7	387	20	17	32	29	1.95
1174717--1174792	34	2.2	34	95	0	134	53	0	0	46	1.00
1176174--1176228	20	2.8	21	83	10	80	30	14	5	49	1.66
1176174--1176228	19	2.8	20	86	8	78	30	14	5	49	1.66
1178622--1178811	96	2.0	97	86	1	265	30	20	10	39	1.85
1178622--1178838	96	2.2	96	83	0	254	28	21	11	39	1.87
1179777--1179948	67	2.5	68	82	0	211	22	13	31	32	1.93
1179748--1180853	68	16.1	68	71	8	448	24	14	29	31	1.95
1179821--1180848	136	7.5	136	73	7	555	24	14	30	31	1.94
1180497--1180763	140	1.9	141	78	2	295	25	13	28	32	1.93
1181131--1181203	36	2.0	36	82	10	87	26	28	13	31	1.94
1181659--1181706	24	2.0	24	91	0	78	41	12	20	25	1.87
1184298--1184354	21	2.7	20	76	10	60	17	24	3	54	1.59
1185955--1186026	36	2.0	36	86	7	103	27	29	9	33	1.89
1186107--1186171	31	2.1	31	94	0	112	38	21	10	29	1.87
1186642--1186696	20	2.8	19	78	10	65	40	10	9	40	1.72
1186985--1187273	68	4.2	68	75	8	208	23	12	29	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1187001--1187277	140	2.0	136	79	8	292	23	12	30	33	1.92
1188360--1188404	15	2.9	15	86	3	54	2	8	8	80	1.00
1188741--1188795	28	2.0	28	100	0	110	25	18	10	45	1.82
1191064--1191670	311	2.0	311	83	3	767	39	17	14	28	1.88
1191064--1191670	156	3.9	154	78	5	580	39	17	14	28	1.88
1191673--1191711	19	2.1	19	100	0	78	48	20	5	25	1.70
1196605--1196679	20	3.8	20	83	0	96	42	16	13	28	1.85
1196767--1196821	21	2.6	21	97	0	101	32	14	10	41	1.81
1198001--1198091	19	4.7	19	84	2	101	29	15	13	41	1.85
1198001--1198092	39	2.4	39	83	7	107	29	15	14	41	1.86
1198122--1198186	33	2.0	32	88	11	96	36	15	16	30	1.90
1198142--1198166	13	1.9	13	100	0	50	36	16	16	32	1.90
1199783--1199814	12	2.6	13	85	14	50	50	0	21	28	1.49
1207176--1207222	22	2.2	22	85	14	64	31	21	0	46	1.51
1209504--1209603	20	5.7	20	70	29	102	27	15	15	43	1.85
1209523--1209614	13	8.0	13	69	26	82	28	15	15	41	1.87
1209504--1209614	33	3.4	33	100	0	222	27	15	15	41	1.87
1209673--1209739	33	2.0	33	85	5	91	34	13	16	35	1.88
1213438--1213488	27	1.9	26	92	4	84	21	33	17	27	1.96
1226185--1226232	20	2.4	20	83	10	62	85	8	2	4	0.80
1227321--1228067	61	12.3	62	86	4	899	25	27	19	27	1.99
1228050--1228353	41	7.4	40	70	11	154	22	24	13	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1228050--1228289	85	2.8	87	80	6	253	22	24	13	40	1.90
1228917--1228971	20	2.8	20	81	5	69	25	14	16	43	1.86
1231372--1231487	51	2.3	51	83	1	133	30	26	10	32	1.90
1231291--1231530	131	1.8	130	84	2	329	28	24	12	35	1.92
1231422--1231574	80	1.9	80	85	2	209	28	26	13	31	1.94
1243844--1243895	1	52.0	1	76	0	50	88	7	1	1	0.66
1243844--1243893	15	3.4	14	84	13	57	88	8	2	2	0.68
1243844--1243895	20	2.6	19	85	11	68	88	7	1	1	0.66
1243844--1243909	9	7.4	9	77	6	55	84	6	7	1	0.82
1245001--1245678	62	11.1	61	85	4	832	24	26	19	29	1.98
1245001--1245678	123	5.5	121	83	4	808	24	26	19	29	1.98
1245647--1245859	84	2.5	85	78	8	211	19	23	13	43	1.87
1246510--1246564	20	2.8	20	89	5	87	27	12	14	45	1.81
1248926--1249127	80	2.5	78	84	4	260	27	24	13	34	1.93
1248926--1249153	80	2.9	78	81	8	253	26	25	14	32	1.94
1251724--1251784	28	2.2	28	84	0	77	32	26	18	22	1.97
1251766--1251854	28	3.2	27	74	6	88	31	21	21	25	1.98
1251865--1251932	26	2.6	26	97	0	127	29	35	17	17	1.93
1252000--1252066	28	2.5	27	85	9	84	34	29	14	20	1.93
1252210--1252264	28	2.0	28	92	0	92	34	32	16	16	1.91
1254648--1254693	21	2.2	21	96	0	83	17	2	17	63	1.42
1257364--1257399	17	2.1	17	100	0	72	41	11	19	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1260929--1260966	20	1.9	20	94	0	67	31	15	18	34	1.92
1262576--1262600	3	8.3	3	100	0	50	32	0	36	32	1.58
1263201--1263240	21	1.9	21	89	0	62	57	5	12	25	1.55
1269148--1269172	12	2.1	12	100	0	50	36	16	16	32	1.90
1269626--1269679	19	2.8	20	77	2	56	35	12	14	37	1.85
1278093--1278298	89	2.3	91	85	3	265	28	30	13	28	1.94
1278758--1278977	47	4.7	46	76	4	215	24	22	14	39	1.91
1278758--1278977	94	2.3	94	80	1	253	24	22	14	39	1.91
1279249--1279418	92	1.8	92	87	0	250	22	22	11	42	1.86
1279025--1279423	46	8.7	46	72	6	216	21	23	11	43	1.85
1279820--1279896	31	2.4	32	95	2	138	29	15	15	38	1.89
1282088--1282119	14	2.3	14	94	0	55	43	12	15	28	1.83
1283015--1283142	46	2.8	45	77	12	118	24	22	10	42	1.84
1283079--1283182	46	2.3	46	79	3	102	25	21	10	42	1.85
1283389--1283619	43	5.4	41	70	10	160	17	23	13	45	1.84
1283432--1283738	42	7.2	42	68	10	194	17	22	14	45	1.84
1283379--1283759	85	4.5	85	83	2	469	18	23	13	44	1.85
1284982--1285038	23	2.4	24	82	8	71	17	10	3	68	1.33
1285144--1285173	14	2.1	15	93	6	53	20	13	0	66	1.24
1286291--1286352	18	3.3	18	76	10	61	72	9	0	17	1.10
1286284--1286331	8	5.6	8	76	13	51	75	8	0	16	1.04
1286394--1286461	20	3.5	20	80	11	88	48	10	25	16	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1286382--1286476	37	2.6	37	96	0	172	44	8	27	20	1.80
1290396--1290438	21	2.0	21	82	8	52	27	4	16	51	1.64
1298858--1298919	1	62.0	1	77	0	61	88	9	1	0	0.58
1298858--1298917	8	7.8	8	85	9	72	88	10	1	0	0.59
1298859--1298919	27	2.3	27	91	5	97	88	9	1	0	0.58
1298859--1298919	28	2.2	28	91	2	97	88	9	1	0	0.58
1300030--1300768	122	6.0	123	85	3	904	24	26	18	29	1.98
1300030--1300763	62	12.0	60	85	4	835	24	27	19	28	1.98
1300738--1300880	40	3.5	39	76	10	135	19	23	16	40	1.91
1300733--1300893	85	1.9	84	85	3	225	19	23	14	42	1.87
1301604--1301656	20	2.8	20	94	5	92	30	13	11	45	1.78
1304024--1304254	80	2.9	78	84	4	291	27	25	16	31	1.96
1305420--1305452	14	2.4	14	94	0	57	84	6	9	0	0.76
1306828--1306888	28	2.2	28	87	0	86	32	27	16	22	1.96
1306870--1306961	28	3.3	28	74	6	96	31	22	19	26	1.98
1306886--1307144	138	1.9	137	82	3	322	32	25	17	24	1.96
1307078--1307144	28	2.5	26	83	9	73	35	28	14	20	1.93
1307282--1307372	28	3.2	28	95	0	155	35	30	15	18	1.92
1309780--1309827	21	2.3	21	96	0	87	16	4	16	62	1.48
1312491--1312526	17	2.1	17	100	0	72	41	11	19	27	1.85
1314781--1314822	2	21.5	2	95	4	77	50	0	0	50	1.00
1321398--1321423	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1323961--1323999	13	3.0	13	88	0	60	38	15	12	33	1.85
1326051--1326088	15	2.5	15	91	0	58	13	21	15	50	1.78
1327892--1327936	21	2.1	21	88	8	65	22	17	4	55	1.60
1330154--1330179	13	2.0	13	100	0	52	30	15	15	38	1.88
1333137--1333307	89	1.9	88	87	1	252	29	28	15	27	1.96
1333801--1334020	47	4.7	46	77	5	217	25	22	13	39	1.90
1333801--1334020	94	2.3	92	81	3	251	25	22	13	39	1.90
1334068--1334460	46	8.5	46	72	5	238	21	25	11	41	1.87
1334161--1334265	45	2.3	46	82	9	124	19	23	13	43	1.86
1334861--1334939	31	2.5	32	89	2	115	29	17	15	37	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18