genome.fa.s141.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold141
Parameters: 2 7 7 80 10 50 1000
Length:  2772588

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  6  of  18  ( 2069 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
998958--998995	13	2.9	13	96	0	67	31	15	18	34	1.92
1001077--1001106	15	2.0	15	93	0	51	13	23	13	50	1.77
1002910--1002954	21	2.1	21	84	8	56	22	20	4	53	1.63
1008418--1008463	21	2.2	20	81	11	58	32	19	4	43	1.71
1010832--1010896	34	2.0	33	90	6	105	46	15	10	27	1.79
1012279--1012333	20	2.7	21	85	2	76	41	14	16	27	1.87
1017971--1018022	21	2.4	21	78	15	61	57	1	23	17	1.49
1021068--1021132	33	2.0	32	82	8	78	33	15	13	36	1.87
1021760--1021875	32	3.5	34	78	13	118	31	16	23	29	1.96
1021792--1021875	32	2.7	32	85	9	127	30	17	22	28	1.97
1023111--1023209	40	2.5	40	85	6	137	50	7	22	20	1.72
1024041--1024095	20	2.8	20	97	0	101	38	14	9	38	1.78
1025795--1025835	21	2.0	20	90	4	64	51	17	12	19	1.76
1026737--1026808	20	3.7	19	78	15	76	41	13	12	31	1.82
1027473--1027930	52	8.7	51	74	13	333	35	14	26	23	1.93
1027481--1027748	103	2.6	103	88	1	374	35	14	26	23	1.94
1027586--1027913	165	2.0	163	89	1	494	35	14	26	23	1.93
1027786--1027951	52	3.2	51	77	6	181	35	12	24	27	1.91
1028123--1028206	43	2.0	43	82	0	105	34	15	22	27	1.94
1028219--1028347	32	4.0	32	82	4	145	20	17	31	31	1.96
1028517--1028589	28	2.6	28	81	12	89	28	19	27	24	1.98
1030849--1030893	21	2.1	22	91	4	74	46	8	8	35	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1031244--1031269	13	2.0	13	100	0	52	30	15	15	38	1.88
1031224--1031291	33	2.1	32	94	2	118	36	17	13	32	1.89
1032335--1032401	33	2.0	33	88	0	98	34	11	13	40	1.81
1032355--1032379	13	1.9	13	100	0	50	36	16	16	32	1.90
1032442--1032466	13	1.9	13	100	0	50	32	16	16	36	1.90
1032475--1032595	52	2.3	52	97	0	224	34	18	18	28	1.94
1040927--1041024	47	2.0	50	84	9	132	35	17	17	29	1.93
1041012--1041049	13	2.9	13	92	0	58	34	15	15	34	1.90
1041489--1041531	20	2.1	21	86	4	61	18	41	30	9	1.82
1043635--1043660	13	2.0	13	100	0	52	30	15	15	38	1.88
1043615--1043682	33	2.1	32	94	2	118	36	17	13	32	1.89
1055273--1055318	22	2.1	22	100	0	92	56	4	13	26	1.55
1058069--1058095	13	2.1	13	100	0	54	40	14	14	29	1.86
1058404--1058482	41	2.0	40	82	7	97	48	10	21	20	1.79
1058667--1059128	66	7.1	62	72	12	202	46	10	23	19	1.81
1058879--1059166	66	4.4	66	78	5	179	43	11	24	20	1.84
1059306--1059439	65	2.0	65	82	1	160	44	14	22	18	1.87
1060735--1060791	12	4.5	12	82	6	60	5	15	1	77	1.03
1060729--1060776	18	2.6	17	78	15	51	2	14	2	81	0.88
1063492--1063531	20	2.0	20	90	0	62	37	7	17	37	1.78
1066089--1066147	28	2.1	28	87	0	82	27	27	15	30	1.96
1066262--1066332	28	2.5	28	88	0	106	28	30	16	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1065993--1066386	188	2.1	184	82	4	459	27	24	12	35	1.92
1068187--1068212	13	2.0	13	100	0	52	30	23	15	30	1.95
1068302--1068355	21	2.5	22	93	6	101	38	11	24	25	1.88
1068380--1068515	53	2.5	53	92	1	227	27	17	16	37	1.92
1068503--1068555	20	2.6	21	85	5	65	30	13	15	41	1.85
1068595--1068635	21	2.0	21	85	9	57	39	9	12	39	1.76
1070230--1070254	13	1.9	13	100	0	50	32	16	16	36	1.90
1070808--1070854	23	2.0	24	84	12	62	61	19	4	14	1.49
1073968--1073993	13	2.0	13	100	0	52	30	23	15	30	1.95
1074083--1074136	21	2.5	22	93	6	101	38	11	24	25	1.88
1074161--1074296	53	2.5	53	91	1	227	26	17	18	37	1.93
1074266--1074336	20	3.5	21	81	7	67	29	12	15	42	1.84
1074376--1074416	21	2.0	21	85	9	57	39	9	12	39	1.76
1076299--1076355	13	3.9	13	76	24	60	35	14	17	33	1.90
1076276--1076374	19	5.9	17	71	28	79	34	13	16	36	1.87
1076279--1076379	32	3.1	32	95	1	175	34	12	16	35	1.87
1076417--1076441	13	1.9	13	100	0	50	32	16	16	36	1.90
1079662--1079702	20	2.0	20	90	9	66	51	9	14	24	1.72
1091063--1091137	20	3.8	19	76	15	80	41	16	14	28	1.87
1091152--1091206	20	2.8	20	91	0	92	43	16	16	23	1.87
1091797--1092157	45	8.3	43	78	8	261	39	13	27	19	1.89
1091797--1092157	88	4.2	87	76	8	297	39	13	27	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1091797--1092116	176	1.8	173	82	4	410	39	13	27	20	1.89
1091922--1092157	131	1.8	131	89	3	377	37	14	27	20	1.91
1092141--1092335	60	3.3	59	90	6	297	22	20	30	26	1.98
1092098--1092559	224	2.1	224	92	1	786	25	19	29	25	1.98
1092252--1092438	103	1.8	102	86	5	270	25	20	30	24	1.98
1092354--1092745	60	6.5	61	82	5	435	25	18	28	27	1.98
1092364--1092719	183	1.9	182	87	4	520	25	18	28	27	1.98
1092663--1092939	100	2.8	99	87	4	393	27	18	28	25	1.98
1098841--1098912	20	3.6	20	76	0	72	33	13	11	41	1.80
1098838--1098915	40	2.0	39	87	2	111	33	12	12	41	1.82
1112734--1112781	5	9.8	5	82	13	64	85	12	0	2	0.69
1112724--1112798	14	5.5	13	78	16	73	85	8	1	5	0.80
1112723--1112798	25	3.2	25	88	5	104	85	7	1	5	0.79
1112723--1112798	1	76.0	1	72	0	53	85	7	1	5	0.79
1112724--1112824	13	7.8	13	71	18	50	82	9	2	4	0.93
1114031--1115296	28	44.5	29	83	7	1337	27	30	18	23	1.97
1114031--1115296	111	11.1	112	82	8	1400	27	30	18	23	1.97
1115903--1115953	20	2.5	20	83	0	66	35	11	13	39	1.82
1121231--1121255	4	6.2	4	100	0	50	76	0	0	24	0.80
1123324--1123541	79	2.8	78	87	2	294	32	13	24	29	1.93
1123631--1123846	51	4.3	51	76	9	192	34	12	23	29	1.92
1126186--1126216	13	2.4	13	94	0	53	38	12	16	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1126200--1126253	20	2.7	20	82	5	65	40	14	16	27	1.88
1131893--1131952	18	3.4	18	77	9	70	76	6	13	3	1.11
1133359--1133484	28	4.5	28	72	11	89	34	23	18	23	1.96
1133798--1133850	25	2.2	25	89	3	81	13	13	11	62	1.55
1136341--1136381	21	2.0	21	85	9	57	39	12	9	39	1.76
1136418--1136474	21	2.8	20	81	5	69	40	15	14	29	1.87
1136462--1136598	53	2.6	53	94	1	229	38	18	16	26	1.92
1136562--1136598	19	2.0	19	94	5	67	45	16	10	27	1.80
1136622--1136652	10	3.1	10	90	0	53	22	29	6	41	1.78
1136640--1136695	21	2.6	22	94	5	105	26	25	10	37	1.88
1137158--1137224	37	1.9	35	88	11	102	32	11	25	29	1.92
1137475--1137517	15	2.8	16	92	7	79	37	0	11	51	1.39
1137509--1137554	20	2.3	21	85	11	69	34	4	13	47	1.62
1138365--1138415	24	2.1	24	88	0	75	27	25	5	41	1.78
1140562--1140613	21	2.4	21	78	15	61	57	1	23	17	1.49
1141501--1141541	21	2.0	21	85	9	57	39	12	9	39	1.76
1141581--1141651	20	3.6	19	77	7	70	40	16	12	29	1.86
1141621--1141757	53	2.6	53	96	1	247	37	18	17	27	1.93
1141781--1141811	10	3.1	10	90	0	53	22	29	6	41	1.78
1141799--1141878	21	3.6	22	86	6	108	28	23	11	36	1.89
1141907--1141932	13	2.0	13	100	0	52	30	15	23	30	1.95
1144928--1145000	20	3.6	20	81	3	101	35	13	19	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1144946--1145021	21	3.7	21	80	3	100	42	11	17	28	1.84
1144928--1145021	41	2.3	41	98	0	179	39	12	18	29	1.88
1147265--1147309	21	2.1	21	84	8	56	53	4	20	22	1.63
1151141--1151216	20	3.5	21	72	16	66	27	13	14	44	1.82
1151207--1151244	13	2.9	13	92	0	58	34	15	15	34	1.90
1153688--1153760	20	3.6	20	81	3	101	35	13	19	31	1.91
1153706--1153781	21	3.7	21	80	3	100	42	11	17	28	1.84
1153688--1153781	41	2.3	41	98	0	179	39	12	18	29	1.88
1153820--1153845	13	2.0	13	100	0	52	38	15	15	30	1.88
1160493--1160684	52	3.7	52	76	5	194	38	14	21	26	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18