genome.fa.s141.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold141
Parameters: 2 7 7 80 10 50 1000
Length:  2772588

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  3  of  18  ( 2069 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
378439--378507	20	3.4	21	87	4	70	28	18	14	37	1.91
378453--378514	20	3.1	20	97	0	115	27	19	12	40	1.88
378946--378983	20	2.1	19	85	14	53	47	10	5	36	1.61
380121--380151	13	2.4	13	94	0	53	35	16	12	35	1.87
380105--380171	33	2.0	32	88	11	100	35	13	17	32	1.89
380206--380243	20	2.0	20	89	5	60	34	10	18	36	1.85
381750--381779	3	10.0	3	92	0	51	30	0	36	33	1.58
386156--386196	19	2.2	19	86	8	57	26	0	21	51	1.48
386470--386516	22	2.2	22	85	14	64	31	21	0	46	1.51
388188--388238	21	2.3	22	83	10	59	41	0	23	35	1.55
388219--388269	20	2.6	20	87	3	68	35	1	37	25	1.67
388839--388863	13	1.9	13	100	0	50	36	16	16	32	1.90
388818--388882	33	2.0	32	87	3	94	30	16	15	36	1.90
388854--388904	20	2.6	20	87	3	68	33	15	15	35	1.90
388848--388904	19	3.0	20	79	7	73	35	15	15	33	1.90
389795--389850	20	2.8	20	80	2	67	37	10	17	33	1.85
389887--390006	51	2.3	52	82	4	145	31	15	11	40	1.84
389917--390025	52	2.1	51	82	1	128	35	15	11	37	1.83
392435--392741	80	3.8	81	79	5	311	28	25	12	33	1.92
392391--392735	160	2.1	160	82	5	417	27	24	11	35	1.91
392429--392776	80	4.4	79	77	7	274	27	24	12	35	1.91
392441--392801	160	2.3	160	81	2	386	27	25	13	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395445--395497	21	2.6	19	75	16	52	45	5	5	43	1.51
396605--396704	10	10.0	10	72	12	53	30	12	26	32	1.92
396605--396723	40	3.0	40	94	0	211	29	11	27	31	1.92
406890--407048	73	2.2	73	91	0	255	42	15	14	28	1.86
410990--411170	80	2.3	79	83	3	227	28	25	11	34	1.91
411105--411223	52	2.3	51	81	7	141	30	23	9	36	1.86
412155--412229	25	3.0	25	98	0	141	26	24	12	37	1.90
426561--426621	30	2.0	30	93	0	104	42	9	24	22	1.84
429499--429546	24	2.0	24	100	0	96	33	4	33	29	1.77
431413--431437	13	1.9	13	100	0	50	36	16	16	32	1.90
435873--435943	20	3.5	20	82	3	81	33	12	12	40	1.81
449870--449894	13	1.9	13	100	0	50	36	16	16	32	1.90
449947--450011	19	3.7	19	71	23	61	40	13	12	33	1.82
449942--450009	32	2.1	32	91	0	109	38	14	11	35	1.83
449966--449990	13	1.9	13	100	0	50	32	16	16	36	1.90
453523--453600	9	7.9	10	78	20	76	80	14	1	3	0.91
453525--453579	19	3.0	18	85	12	76	85	10	1	1	0.75
453523--453600	29	2.7	28	88	9	104	80	14	1	3	0.91
453526--453599	19	3.9	17	83	13	67	82	12	1	4	0.87
454822--455312	28	17.5	28	89	1	696	30	30	16	21	1.96
457148--457186	20	1.9	21	89	5	62	20	10	10	58	1.59
459829--459861	13	2.5	13	95	0	57	33	15	15	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459904--459959	19	2.9	19	91	2	85	33	17	17	30	1.94
462368--462392	13	1.9	13	100	0	50	32	20	16	32	1.94
464104--464160	13	3.9	13	76	24	60	35	14	17	33	1.90
464117--464177	19	3.6	18	75	25	69	32	11	18	37	1.86
464103--464192	32	2.8	32	94	0	153	33	13	16	36	1.88
464231--464256	13	2.0	13	100	0	52	30	15	15	38	1.88
469783--470182	200	2.0	200	99	0	791	34	21	21	22	1.97
478367--478444	1	78.0	1	71	0	57	85	5	8	0	0.72
478367--478445	9	8.7	9	77	15	65	84	5	10	0	0.75
478368--478443	29	2.6	29	85	4	89	85	5	9	0	0.73
478367--478433	20	3.4	19	84	13	82	86	2	10	0	0.67
478366--478444	20	4.0	20	82	12	76	84	6	8	0	0.76
480216--480240	13	1.9	13	100	0	50	36	16	16	32	1.90
480311--480336	13	2.0	13	100	0	52	30	15	15	38	1.88
480887--480913	10	2.7	10	100	0	54	55	37	0	7	1.28
488302--488353	19	2.7	19	87	3	68	32	17	19	30	1.95
492340--492674	79	4.3	79	84	5	410	33	14	24	27	1.94
492326--492666	156	2.2	158	87	4	485	33	14	24	27	1.95
495007--495141	50	2.7	50	85	4	175	40	14	15	29	1.86
495656--495881	82	2.7	81	79	8	206	41	12	25	20	1.87
495784--495864	40	1.9	44	82	12	107	49	9	22	18	1.77
495779--495881	45	2.5	40	77	7	107	45	12	20	21	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
495931--496328	60	6.6	61	88	2	540	28	17	27	26	1.98
497289--497323	12	2.9	12	86	0	52	0	17	0	82	0.66
497291--497325	17	2.1	17	94	0	61	0	14	0	85	0.59
509653--509725	28	2.6	28	89	4	85	30	16	28	24	1.96
509683--509870	79	2.4	77	84	7	229	30	12	28	29	1.93
509802--509935	69	1.9	69	82	5	164	33	14	23	29	1.94
512238--512373	50	2.7	51	85	3	159	42	12	16	28	1.84
513142--513189	21	2.3	21	96	0	87	22	14	0	62	1.32
513142--513203	21	3.0	21	86	9	74	17	17	0	64	1.29
514984--515032	20	2.4	21	89	3	73	36	16	12	34	1.86
515076--515125	19	2.6	19	80	3	55	30	16	18	36	1.92
515115--515171	13	3.8	13	72	27	51	36	15	15	31	1.90
515128--515191	20	3.5	20	72	27	79	37	15	15	31	1.89
515115--515192	33	2.4	33	100	0	156	38	15	15	30	1.88
520335--520371	9	3.9	10	82	10	51	54	0	0	45	1.00
520334--520371	18	2.1	18	90	9	60	55	0	0	44	0.99
520381--520405	13	1.9	13	100	0	50	32	12	0	56	1.36
522411--522444	11	3.1	11	88	12	52	70	0	0	29	0.87
523193--523222	16	1.9	16	93	6	53	40	6	3	50	1.45
523183--523226	16	2.8	15	82	6	52	38	4	2	54	1.33
524069--524094	13	2.0	13	100	0	52	38	15	15	30	1.88
644554--644617	13	4.7	14	71	13	53	84	4	10	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
645583--646368	55	14.3	55	91	4	1161	29	30	20	20	1.98
646983--647039	21	2.7	21	97	0	105	33	10	19	36	1.86
647095--647149	19	2.9	19	97	0	101	34	10	14	40	1.81
647189--647214	13	2.0	13	100	0	52	30	15	15	38	1.88
647169--647235	33	2.0	33	88	0	98	25	14	16	43	1.86
649687--649856	52	3.3	51	79	12	186	29	24	12	32	1.93
649840--649916	28	2.8	28	87	0	100	23	33	19	23	1.97
649870--650071	76	2.6	78	79	5	214	25	30	16	28	1.97
669117--669202	25	3.4	25	80	6	86	80	3	6	9	1.01
669164--669203	15	2.7	14	85	11	53	87	7	2	2	0.71
669178--669221	21	2.2	21	92	8	74	81	11	6	0	0.86
669168--669232	28	2.3	28	82	12	80	80	9	6	4	1.03
670212--670238	14	1.9	14	100	0	54	29	29	11	29	1.91
670928--671091	33	5.0	33	83	6	210	22	26	19	31	1.98
670926--671091	67	2.6	63	85	6	210	22	26	19	31	1.97
670928--671164	67	3.7	67	78	8	174	24	27	19	27	1.99
670921--671149	98	2.4	97	79	7	234	24	27	20	28	1.99
671075--671181	31	3.4	31	68	6	81	25	27	23	24	2.00
671188--671644	52	9.0	50	71	7	251	27	23	16	32	1.96
671227--671609	102	3.8	102	80	2	367	27	24	15	32	1.95
671227--671609	204	1.9	204	81	3	475	27	24	15	32	1.95
671260--671688	52	8.3	52	69	10	193	26	23	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
672282--672327	20	2.2	21	88	3	67	41	13	15	30	1.85
683673--683728	20	2.9	19	84	10	69	80	17	1	0	0.80
683674--683727	19	2.9	18	81	15	58	79	18	1	0	0.82
685040--685065	13	2.0	13	100	0	52	30	15	15	38	1.88
685020--685083	32	2.0	33	90	3	103	28	14	15	42	1.86
685489--685538	27	1.9	27	88	8	77	34	24	4	38	1.74
686186--686523	30	11.0	30	78	6	322	22	29	15	32	1.94
686196--686903	33	22.7	30	73	16	290	21	29	14	34	1.92
686199--686556	93	3.9	91	80	10	388	22	29	15	33	1.94
686186--686494	123	2.5	122	84	6	401	22	30	14	33	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18