genome.fa.s153.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold153
Parameters: 2 7 7 80 10 50 1000
Length:  3137677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  15  of  24  ( 2803 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1955084--1955108	12	2.1	12	100	0	50	36	0	0	64	0.94
1957436--1957464	2	14.5	2	100	0	58	48	0	0	51	1.00
1958290--1958323	16	2.1	17	88	5	52	52	0	5	41	1.25
1958498--1958525	5	5.6	5	100	0	56	42	0	0	57	0.99
1968160--1968397	129	1.8	131	81	5	304	38	3	5	52	1.41
1968376--1968429	19	2.9	19	76	17	60	25	1	5	66	1.23
1972900--1972926	14	1.9	14	100	0	54	74	0	0	25	0.83
1974747--1974919	7	23.1	7	69	17	82	59	0	1	38	1.09
1974748--1974919	21	7.6	23	68	18	94	59	0	1	38	1.09
1974792--1974849	18	3.4	18	67	26	54	53	0	0	46	1.00
1974827--1974913	20	4.1	21	75	17	65	62	0	0	37	0.96
1974792--1974914	19	6.9	17	72	20	76	58	0	0	41	0.98
1974842--1974908	6	11.8	6	78	15	72	64	0	0	35	0.94
1974747--1974920	49	3.5	47	76	14	156	59	0	1	39	1.09
1974815--1974920	15	7.0	15	71	25	55	60	0	0	39	0.97
1975117--1975210	8	11.2	8	73	17	75	41	0	0	58	0.98
1975093--1975158	28	2.4	28	82	9	75	42	1	0	56	1.08
1975117--1975210	41	2.2	42	81	10	104	41	0	0	58	0.98
1975109--1975203	11	9.2	11	73	19	71	38	1	0	60	1.04
1975387--1975420	16	2.0	18	88	11	54	47	0	0	52	1.00
1975474--1975554	40	2.1	39	81	11	94	43	1	0	55	1.07
1975499--1975603	28	3.7	29	69	16	85	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1975540--1975573	16	2.1	17	89	10	54	47	0	0	52	1.00
1975569--1975603	13	2.5	14	90	9	54	48	0	0	51	1.00
1975771--1975890	11	11.3	11	70	16	58	61	0	0	38	0.96
1975771--1975890	22	5.6	22	73	16	101	61	0	0	38	0.96
1975808--1975865	20	2.9	20	82	10	57	55	0	0	44	0.99
1976625--1976661	2	18.5	2	100	0	74	48	0	0	51	1.00
1977255--1977283	2	14.5	2	100	0	58	48	0	0	51	1.00
1977370--1977459	27	3.5	26	79	13	105	26	4	18	50	1.66
1981914--1982018	27	3.9	27	77	5	106	23	8	22	44	1.80
1983742--1983828	43	2.0	43	86	8	124	26	16	12	44	1.83
1984078--1984130	25	2.1	26	85	3	72	58	0	0	41	0.98
1985099--1985133	18	2.0	18	94	5	63	68	0	0	31	0.90
1985114--1985150	12	3.2	11	88	11	56	81	0	0	18	0.70
1986665--1986703	18	2.1	19	90	4	62	53	0	0	46	1.00
1986664--1986710	18	2.4	18	82	10	58	51	0	0	48	1.00
1986979--1987013	2	17.5	2	93	0	61	48	2	0	48	1.16
1987582--1987608	2	13.5	2	100	0	54	48	0	0	51	1.00
1988470--1988523	27	2.0	27	82	10	65	68	1	7	22	1.24
1992412--1992437	2	13.0	2	100	0	52	50	0	0	50	1.00
1996444--1996494	3	17.0	3	95	0	93	66	1	0	31	1.03
1998886--1998931	24	1.9	24	95	0	83	54	0	2	43	1.12
1999214--1999259	20	2.4	19	80	16	51	52	2	0	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1999283--1999324	22	1.9	22	85	9	59	57	0	2	40	1.12
2003158--2003205	24	2.0	23	88	11	71	25	0	4	70	1.04
2004900--2004935	17	2.1	17	89	0	54	47	0	0	52	1.00
2005910--2005950	15	2.8	15	92	3	66	58	0	0	41	0.98
2006841--2006874	10	3.3	10	84	8	50	64	0	0	35	0.94
2010446--2010489	23	1.9	23	81	9	54	52	4	22	20	1.65
2017188--2017248	24	2.6	24	78	2	61	57	0	1	40	1.08
2019305--2019508	33	6.2	33	72	0	138	20	19	26	33	1.96
2019305--2019475	66	2.6	66	74	0	153	21	19	25	32	1.97
2019335--2019551	99	2.2	99	84	0	272	23	19	25	31	1.98
2019654--2019803	33	4.5	33	84	8	148	20	15	35	28	1.93
2019826--2019936	33	3.4	32	82	2	96	19	16	32	31	1.94
2025918--2025958	16	2.5	17	80	11	59	70	0	2	26	0.99
2028959--2028984	2	13.0	2	100	0	52	50	0	0	50	1.00
2030692--2030728	16	2.3	16	90	0	56	16	51	5	27	1.66
2033277--2033301	2	12.5	2	100	0	50	52	0	48	0	1.00
2033720--2033773	15	3.2	17	80	15	67	55	0	0	44	0.99
2034137--2034209	27	2.7	26	79	8	83	63	0	0	36	0.95
2034119--2034209	39	2.4	37	80	12	94	63	0	1	35	1.02
2034132--2034213	27	3.0	26	71	15	67	59	0	0	40	0.97
2034195--2034231	17	2.1	18	95	5	67	45	0	0	54	1.00
2034955--2034997	18	2.4	18	88	7	61	32	0	6	60	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2037795--2037839	22	2.0	22	100	0	90	42	17	22	17	1.89
2039355--2039393	18	2.1	19	86	13	55	53	10	15	20	1.70
2042651--2042685	18	2.0	18	94	5	63	31	0	0	68	0.90
2042791--2042834	23	1.9	23	86	9	63	29	0	2	68	1.02
2042800--2042845	16	2.9	15	81	12	56	30	0	2	67	1.03
2042813--2042848	18	2.0	18	89	10	56	36	0	0	63	0.94
2043505--2043557	22	2.4	23	81	9	74	52	0	0	47	1.00
2043513--2043559	21	2.2	21	88	7	69	51	0	0	48	1.00
2045644--2045685	13	3.2	13	86	0	66	50	7	2	40	1.43
2046325--2046373	19	2.6	19	81	12	64	77	2	4	16	1.01
2046339--2046381	12	3.7	11	81	6	50	81	0	6	11	0.87
2046325--2046378	18	2.9	18	81	10	56	77	1	5	14	1.03
2047817--2047858	16	2.6	17	85	11	61	57	0	0	42	0.99
2048960--2049001	3	14.0	3	100	0	84	33	33	0	33	1.58
2053627--2053676	26	1.9	26	84	8	66	48	0	0	52	1.00
2053627--2053671	14	3.4	14	81	9	58	46	0	0	53	1.00
2053625--2053692	35	2.0	32	86	8	91	48	0	0	51	1.00
2053791--2053826	18	2.0	18	89	10	56	66	0	0	33	0.92
2053819--2053898	23	3.5	24	78	14	71	57	0	0	42	0.98
2053795--2053860	35	2.0	31	85	11	87	63	0	0	36	0.95
2053823--2053944	22	5.6	23	70	20	84	53	0	0	45	1.06
2053835--2053947	21	5.0	22	76	13	88	51	0	0	47	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2053867--2053941	5	14.4	5	73	8	51	53	1	0	45	1.08
2054107--2054262	26	6.0	26	89	4	244	57	1	0	41	1.07
2054107--2054254	53	2.8	53	98	1	289	56	1	0	41	1.07
2060067--2060101	2	17.5	2	100	0	70	48	0	0	51	1.00
2060247--2060276	1	30.0	1	93	0	51	0	3	0	96	0.21
2060486--2060584	30	3.3	30	81	4	110	40	2	16	41	1.59
2060646--2060671	3	8.7	3	100	0	52	65	0	0	34	0.93
2063976--2064007	14	2.3	14	100	0	64	21	6	25	46	1.74
2065433--2065474	15	2.9	15	85	3	59	57	0	0	42	0.99
2066146--2066186	17	2.4	17	91	0	64	58	0	0	41	0.98
2067221--2067260	2	20.0	2	84	0	53	42	2	2	52	1.28
2068807--2068866	22	2.7	22	89	2	75	55	3	13	28	1.54
2068819--2068866	22	2.2	22	96	0	87	50	2	16	31	1.57
2069446--2069486	2	20.5	2	100	0	82	48	0	0	51	1.00
2070324--2070358	11	3.2	11	87	0	52	77	0	0	22	0.78
2070323--2070365	10	4.1	11	82	8	54	69	0	0	30	0.88
2070394--2070451	17	3.6	16	72	25	50	55	0	1	43	1.10
2071805--2071832	2	14.0	2	100	0	56	50	0	0	50	1.00
2073709--2073733	2	12.5	2	100	0	50	48	0	0	52	1.00
2076506--2076541	18	2.1	18	90	10	58	2	8	0	88	0.59
2079108--2079180	31	2.4	29	78	17	76	34	0	5	60	1.20
2079926--2079966	2	20.5	2	100	0	82	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2088957--2088982	2	13.0	2	100	0	52	50	0	0	50	1.00
2089055--2089101	24	2.0	23	91	4	76	48	4	0	46	1.21
2096381--2096428	24	2.0	24	100	0	96	41	16	4	37	1.68
2102918--2102959	19	2.3	18	76	8	50	59	0	0	40	0.97
2104404--2104515	19	5.8	19	67	14	70	59	0	0	40	0.97
2104402--2104461	21	3.0	21	85	7	88	63	0	0	36	0.95
2104423--2104470	12	4.1	12	78	5	53	68	0	0	31	0.90
2104456--2104511	20	2.8	21	81	8	71	55	0	0	44	0.99
2104757--2104816	10	5.8	10	75	13	59	51	1	0	46	1.10
2104760--2104815	16	3.6	14	76	23	51	50	1	0	48	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24