genome.fa.s153.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold153
Parameters: 2 7 7 80 10 50 1000
Length:  3137677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  4  of  24  ( 2803 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467627--467724	29	3.7	27	75	15	96	52	0	0	47	1.00
467666--467702	16	2.2	18	85	9	51	48	0	0	51	1.00
467627--467730	53	2.1	48	82	15	122	52	0	0	47	1.00
468055--468087	11	3.1	11	82	8	50	51	0	0	48	1.00
468059--468132	27	2.7	28	78	10	73	58	1	0	40	1.07
468275--468308	17	2.1	16	88	5	50	35	0	2	61	1.11
468374--468399	3	8.7	3	100	0	52	34	0	0	65	0.93
468824--469051	106	2.2	106	86	7	313	42	12	8	35	1.73
471384--471446	30	2.1	30	93	0	108	49	17	15	17	1.80
471559--471595	18	2.1	18	94	0	65	40	16	18	24	1.90
477251--477281	13	2.4	13	94	0	53	35	12	16	35	1.87
477231--477297	33	2.0	33	88	11	102	32	17	13	35	1.89
477326--477379	19	2.7	20	88	5	74	35	18	16	29	1.93
478919--478943	13	1.9	13	100	0	50	36	16	16	32	1.90
478896--478963	33	2.1	33	88	2	102	32	14	17	35	1.91
481015--481042	13	2.2	13	100	0	56	42	14	14	28	1.84
487199--487229	13	2.4	13	94	0	53	35	12	16	35	1.87
487179--487245	33	2.0	33	88	11	102	32	17	13	35	1.89
487274--487330	19	2.9	19	86	5	69	35	15	19	29	1.93
487296--487360	32	2.0	33	87	3	96	40	15	18	26	1.90
491089--491117	12	2.4	12	100	0	58	20	31	6	41	1.79
495282--495376	19	5.7	18	70	27	84	33	11	17	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
495301--495357	13	3.9	13	74	24	51	35	12	17	35	1.87
495280--495384	32	3.3	32	95	0	192	34	11	18	36	1.86
495401--495442	21	2.0	21	90	0	66	40	7	21	30	1.80
495429--495454	13	2.0	13	100	0	52	30	15	15	38	1.88
497811--497943	52	2.6	50	84	6	169	29	24	12	33	1.93
497924--498064	76	1.9	76	83	3	185	29	26	14	29	1.95
497924--498094	76	2.2	76	81	7	182	29	24	14	32	1.94
498073--498253	51	3.5	51	88	1	256	30	25	10	33	1.89
501303--501376	20	3.7	20	83	0	94	33	12	13	40	1.82
509043--509068	13	2.0	13	100	0	52	30	15	15	38	1.88
509023--509086	33	2.0	32	93	3	110	28	12	21	37	1.90
509023--509086	19	3.6	19	72	25	68	28	12	21	37	1.90
509168--509192	13	1.9	13	100	0	50	36	16	16	32	1.90
511652--511689	13	2.9	13	96	0	67	34	18	15	31	1.92
517827--517890	13	3.6	19	74	25	77	26	12	21	39	1.89
517827--517890	33	2.0	33	96	3	121	26	12	21	39	1.89
517932--517984	20	2.6	21	76	8	56	32	16	13	37	1.88
517972--517996	13	1.9	13	100	0	50	36	16	16	32	1.90
530880--530983	46	2.3	46	80	12	117	70	9	12	7	1.34
532218--532785	28	20.4	28	85	2	637	25	29	14	29	1.95
532218--532773	83	6.7	83	83	3	632	25	29	14	30	1.95
532218--532785	138	4.1	137	85	4	649	25	29	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
532215--533315	28	38.2	29	82	6	607	27	29	16	26	1.97
532743--533062	32	10.4	32	82	6	294	30	31	17	20	1.95
532743--533288	64	9.2	63	80	10	330	30	30	17	21	1.96
532705--533304	90	6.7	92	79	9	432	30	29	17	22	1.97
533343--533466	46	2.7	46	84	1	124	23	25	18	32	1.97
533372--533466	46	2.1	46	91	0	154	22	29	17	30	1.97
533372--533506	46	2.9	46	85	2	153	20	28	18	32	1.96
534270--534337	20	3.4	20	81	0	91	35	13	11	39	1.81
534346--534389	20	2.0	21	83	16	63	27	13	11	47	1.77
541262--541362	46	2.2	46	82	10	118	72	8	10	7	1.29
542597--543408	28	28.4	28	82	6	389	28	29	15	26	1.96
542597--542957	110	3.2	110	81	6	390	24	28	14	32	1.95
542628--542956	138	2.4	137	82	3	401	24	28	14	31	1.95
542782--543408	56	10.9	56	80	8	535	29	30	16	23	1.96
542782--543408	85	7.2	84	79	8	535	29	30	16	23	1.96
543467--543583	46	2.6	45	78	5	119	24	23	18	33	1.97
544357--544433	20	3.8	20	85	0	109	35	11	12	40	1.80
544308--544483	91	1.9	91	90	0	280	30	15	10	43	1.81
544442--544483	20	2.0	20	90	4	66	30	16	9	42	1.80
548335--548390	28	2.0	28	96	0	103	30	17	23	28	1.97
550805--551399	28	21.0	28	79	7	524	28	28	17	25	1.97
551097--551399	29	10.5	29	82	5	285	29	28	16	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
552765--553164	49	8.1	49	84	1	503	24	26	17	31	1.97
552765--553225	98	4.6	99	89	4	640	24	26	16	31	1.96
552774--553212	49	8.6	54	81	9	344	25	26	16	31	1.96
554040--554106	33	2.0	33	88	0	98	34	11	13	40	1.81
554060--554084	13	1.9	13	100	0	50	36	16	16	32	1.90
554149--554173	13	1.9	13	100	0	50	32	16	16	36	1.90
554182--554302	52	2.3	52	95	0	215	34	17	18	29	1.94
561486--561519	15	2.3	15	89	0	50	85	5	8	0	0.75
562528--562642	30	3.7	31	83	3	115	22	29	18	29	1.97
562563--562951	33	11.8	33	80	13	380	19	33	13	33	1.90
562584--562910	60	5.1	61	81	15	383	20	34	13	32	1.91
562617--562674	27	2.2	26	84	6	80	20	36	15	27	1.93
562579--562910	132	2.6	129	91	5	544	20	33	12	33	1.90
562649--562964	97	3.1	100	86	9	410	20	34	12	32	1.90
562645--562948	70	4.5	68	85	11	426	20	33	12	33	1.89
562584--562963	202	1.9	191	85	8	523	20	34	12	32	1.90
563018--563793	49	15.7	49	86	2	1065	24	27	17	30	1.97
563018--563856	98	8.4	98	89	4	1200	24	26	17	31	1.97
563018--563854	295	2.8	295	92	1	1368	24	27	17	30	1.97
564669--564735	33	2.0	33	88	0	98	34	11	13	40	1.81
564689--564713	13	1.9	13	100	0	50	36	16	16	32	1.90
564778--564802	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
564811--564931	52	2.3	52	95	0	215	34	17	18	29	1.94
574658--574682	13	1.9	13	100	0	50	36	16	16	32	1.90
574723--574789	33	2.0	33	88	0	98	38	14	13	32	1.86
574745--574769	13	1.9	13	100	0	50	32	16	16	36	1.90
576348--576379	2	16.0	2	100	0	64	50	0	0	50	1.00
577051--577102	21	2.5	21	72	25	56	40	1	1	55	1.22
579721--579775	29	1.9	29	85	3	76	54	1	1	41	1.21
585362--585395	12	2.6	13	90	9	52	67	0	2	29	1.05
586234--586301	26	2.6	25	80	11	75	66	0	1	32	1.01
586245--586301	21	2.7	22	84	7	66	68	0	1	29	1.00
586380--586414	17	2.0	18	94	5	63	17	17	8	57	1.64
587110--587390	47	6.1	45	78	7	267	37	6	3	52	1.47
587112--587365	91	2.7	93	83	7	311	36	6	3	53	1.45
588676--588700	11	2.3	11	100	0	50	20	0	44	36	1.52
588792--588953	28	5.8	26	69	23	84	46	1	0	51	1.13
588825--588949	54	2.3	53	80	14	141	44	1	0	52	1.16
588863--588967	54	1.9	54	94	3	183	42	3	2	50	1.35
590150--590185	2	18.0	2	94	0	63	47	0	0	52	1.00
590310--590355	24	1.9	24	86	0	65	26	6	23	43	1.78
594827--594881	28	2.0	28	100	0	110	18	10	21	49	1.78
594863--594918	27	2.0	28	86	3	78	21	3	23	51	1.63
594887--594932	24	1.9	24	86	0	65	26	6	23	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
595998--596054	21	2.7	21	86	5	71	35	3	28	33	1.74
596019--596062	21	2.1	21	82	0	52	36	4	20	38	1.73
596977--597003	8	3.4	8	100	0	54	88	0	0	11	0.50
599397--599451	21	2.6	21	80	5	67	32	3	25	38	1.73
608826--608851	4	6.5	4	100	0	52	73	0	0	26	0.84
609138--609178	2	20.5	2	94	0	73	48	2	0	48	1.14
613994--614108	51	2.3	50	92	1	194	43	11	17	27	1.83
617298--617479	100	1.8	97	87	5	267	30	10	28	30	1.90
617260--617483	49	4.5	51	77	8	221	31	10	28	29	1.91
618594--618652	22	2.6	22	97	2	109	3	30	20	45	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24