genome.fa.s153.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold153
Parameters: 2 7 7 80 10 50 1000
Length:  3137677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  5  of  24  ( 2803 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
619128--619165	9	4.3	9	86	3	51	13	2	10	73	1.19
619128--619165	17	2.2	18	90	4	60	13	2	10	73	1.19
619803--619896	43	2.2	43	84	3	127	32	18	25	23	1.97
619848--620704	52	16.9	52	68	15	289	33	16	25	24	1.96
619803--620703	101	8.9	99	73	12	592	33	16	25	24	1.96
620204--620290	43	2.0	43	84	0	111	31	17	25	26	1.97
620513--620731	43	4.7	43	73	17	161	32	17	24	25	1.96
620464--620703	95	2.5	95	80	10	254	32	16	24	26	1.96
620418--620747	144	2.3	143	82	4	396	32	17	24	25	1.97
619803--620704	410	2.2	398	81	7	1018	33	16	25	24	1.96
620657--620744	43	2.0	42	89	4	124	31	20	25	22	1.98
620862--620972	32	3.5	32	75	9	109	27	16	27	29	1.97
621143--621207	28	2.4	27	78	2	76	26	20	27	26	1.99
621155--621214	28	2.1	28	81	0	66	26	16	30	26	1.97
622555--622601	11	4.7	11	75	20	50	0	0	12	87	0.55
622549--622590	15	2.7	15	85	7	57	0	2	9	88	0.61
622549--622601	17	3.2	17	84	7	65	0	1	11	86	0.64
626496--626520	13	1.9	13	100	0	50	32	20	16	32	1.94
626476--626545	33	2.1	33	86	0	95	32	14	12	40	1.84
626585--626609	13	1.9	13	100	0	50	32	16	16	36	1.90
626618--626742	52	2.4	52	95	0	223	36	18	17	28	1.94
629915--630214	150	2.0	150	87	1	431	27	14	29	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
637085--637139	28	2.0	28	88	0	83	20	32	25	21	1.97
638090--638508	79	5.3	80	79	5	372	33	13	24	28	1.93
638094--638515	159	2.7	156	82	5	472	33	13	24	28	1.93
639591--639653	17	3.8	16	82	16	74	12	1	4	80	0.93
639590--639647	9	6.7	9	80	13	59	12	1	3	82	0.86
639601--639663	16	3.9	16	80	17	69	14	0	6	79	0.92
639591--639653	8	7.5	8	86	12	74	12	1	4	80	0.93
640615--640665	13	3.6	14	73	21	52	72	0	15	11	1.12
642738--642802	22	3.0	22	71	20	57	52	0	0	47	1.00
643207--643285	21	3.6	21	77	9	77	58	0	3	37	1.16
643388--643482	29	3.0	33	77	16	110	57	0	1	41	1.05
643461--643505	19	2.4	18	82	17	56	57	0	0	42	0.98
643481--643545	34	2.0	31	85	14	87	49	0	0	50	1.00
644544--644593	13	3.7	13	81	5	55	38	0	2	60	1.09
645385--645419	2	17.5	2	100	0	70	48	0	0	51	1.00
645980--646032	18	3.0	17	83	8	61	32	1	1	64	1.15
646469--646502	16	2.1	16	89	10	52	61	0	5	32	1.20
646469--646515	17	2.9	17	84	12	55	59	0	4	36	1.17
646829--646887	3	19.7	3	100	0	118	66	0	0	33	0.92
647089--647115	2	13.5	2	100	0	54	51	0	0	48	1.00
647067--647159	48	1.9	48	95	0	168	48	4	4	43	1.42
649788--649840	2	26.5	2	92	0	88	47	0	1	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
653331--653380	25	2.0	25	84	7	66	60	0	0	40	0.97
655361--655421	25	2.5	24	76	10	61	26	11	9	52	1.68
656598--656635	14	2.9	14	84	7	53	36	0	0	63	0.95
656610--656684	34	2.2	35	83	7	100	49	0	0	50	1.00
659570--659606	3	12.3	3	100	0	74	32	0	0	67	0.91
660148--660226	32	2.5	33	80	12	94	48	0	0	51	1.00
660177--660223	17	2.9	16	74	20	53	48	0	0	51	1.00
660146--660223	33	2.5	30	82	14	86	47	0	0	52	1.00
660148--660231	16	5.2	16	70	23	52	47	1	0	51	1.08
660148--660232	17	5.2	17	70	25	51	47	1	0	51	1.08
660212--660272	30	2.0	31	83	3	79	40	1	0	57	1.08
660737--660782	14	3.3	14	77	17	51	39	0	4	56	1.19
661298--661340	6	7.2	6	97	0	59	6	34	16	41	1.75
661592--661669	41	1.9	41	87	12	117	50	0	0	50	1.00
661592--661663	22	3.5	22	75	14	73	51	0	0	48	1.00
661944--661983	18	2.3	18	83	16	57	47	0	2	50	1.14
662042--662093	15	3.3	15	77	15	50	55	0	0	44	0.99
662417--662486	24	2.8	25	81	12	74	72	1	0	25	0.92
664082--664118	15	2.3	17	86	9	51	35	0	5	59	1.20
664620--664680	30	2.0	31	93	3	106	26	9	9	54	1.64
664733--664760	14	2.0	14	100	0	56	42	21	0	35	1.53
665256--665284	12	2.4	12	100	0	58	24	24	6	44	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668389--668441	19	2.7	20	85	8	72	39	18	13	28	1.88
670035--670068	12	2.8	12	90	0	50	41	0	35	23	1.55
672570--672627	20	2.8	20	97	2	107	31	10	13	44	1.78
672682--672707	13	2.0	13	100	0	52	30	15	15	38	1.88
673393--673436	21	2.1	21	83	8	54	25	31	4	38	1.76
675242--675280	13	3.0	13	100	0	78	38	15	15	30	1.88
677360--677390	15	2.1	15	93	0	53	12	22	16	48	1.80
679139--679186	21	2.2	23	78	14	57	22	18	4	54	1.61
679141--679186	22	2.2	20	84	7	56	21	19	4	54	1.61
685265--685319	28	2.0	28	89	7	85	38	18	23	20	1.93
685217--685398	79	2.3	78	81	2	195	32	17	27	23	1.96
685353--685424	28	2.6	28	88	0	99	23	19	34	22	1.96
685415--685534	51	2.4	48	78	13	123	34	11	24	30	1.91
687896--687921	13	2.0	13	100	0	52	38	15	15	30	1.88
687875--687941	33	2.0	33	88	0	98	43	16	14	25	1.86
688052--688104	21	2.5	21	96	0	97	37	18	11	32	1.87
689014--689103	26	3.3	26	67	19	76	20	18	33	27	1.96
688990--689073	29	3.0	29	66	22	79	20	20	30	28	1.97
688904--690599	55	29.4	59	85	7	1917	24	20	28	26	1.99
688855--690598	289	6.1	286	88	5	2361	24	20	28	26	1.99
690374--690460	28	3.1	28	63	21	65	26	20	26	26	1.99
696770--696824	28	1.9	29	88	3	85	36	20	23	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
696722--696903	79	2.3	78	81	2	195	31	17	27	23	1.96
696858--696929	28	2.6	28	88	0	99	23	19	34	22	1.96
699398--699423	13	2.0	13	100	0	52	38	15	15	30	1.88
699377--699443	33	2.0	33	88	0	98	43	16	14	25	1.86
699554--699610	21	2.7	21	97	0	105	36	19	10	33	1.86
700109--700147	13	3.0	13	96	0	69	30	17	15	35	1.91
700268--700313	21	2.2	20	81	11	58	32	19	4	43	1.71
702692--702749	19	2.9	21	76	10	75	39	22	12	25	1.89
707242--707320	35	2.3	33	79	16	81	40	0	0	59	0.97
713927--714059	66	2.0	66	98	0	257	46	18	10	24	1.80
714426--714461	17	2.1	18	89	5	56	77	0	19	2	0.88
714457--714503	20	2.3	21	78	10	53	51	2	0	46	1.13
715314--715357	2	22.5	2	86	4	63	47	2	0	50	1.13
716574--716612	16	2.3	17	86	8	53	38	0	0	61	0.96
717565--717595	2	15.5	2	100	0	62	48	0	0	51	1.00
718079--718120	17	2.4	18	80	11	52	42	0	2	54	1.13
718536--718574	17	2.3	17	86	8	53	61	2	7	28	1.37
723733--723785	22	2.4	23	87	6	74	0	18	1	79	0.83
723727--723785	21	2.7	22	86	5	75	0	20	1	77	0.85
723718--723796	17	4.5	17	74	16	56	1	22	2	73	1.03
723948--724056	28	3.8	28	72	21	75	57	0	3	37	1.22
724706--724733	13	2.2	13	100	0	56	0	17	7	75	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
725761--725840	33	2.4	32	87	4	106	42	2	3	51	1.33
725768--725824	17	3.4	17	75	20	66	43	1	3	50	1.29
725923--725977	27	2.0	28	82	6	69	36	5	1	56	1.33
725954--725992	17	2.3	17	81	0	51	35	7	0	56	1.28
726915--726943	12	2.3	13	94	5	51	20	0	0	79	0.74
730232--730326	20	4.8	20	79	7	104	38	12	12	35	1.81
730235--730326	40	2.3	40	88	3	132	39	13	11	35	1.81
730937--731904	28	33.6	28	85	4	1121	21	18	32	27	1.96
730937--731902	173	5.6	168	83	7	1114	21	18	32	27	1.96
730892--731907	143	7.0	143	85	6	1175	21	18	32	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24