genome.fa.s153.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold153
Parameters: 2 7 7 80 10 50 1000
Length:  3137677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  23  of  24  ( 2803 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2981751--2981787	14	2.8	14	88	8	51	37	0	0	62	0.96
2981761--2981802	21	2.0	21	86	13	61	40	0	0	59	0.97
2982322--2982357	12	3.1	12	88	8	56	72	0	0	27	0.85
2982325--2982361	11	3.2	12	85	11	51	67	0	0	32	0.91
2982367--2982391	13	1.9	13	100	0	50	52	0	0	48	1.00
2982374--2982438	16	4.5	15	76	16	57	53	0	0	46	1.00
2982337--2982437	11	8.3	12	68	22	52	53	0	0	46	1.00
2983354--2983431	15	4.8	16	73	19	63	46	0	0	53	1.00
2983411--2983469	23	2.5	22	76	10	64	33	0	3	62	1.12
2983341--2983438	33	2.7	37	75	21	107	45	0	1	53	1.07
2983808--2983844	2	18.5	2	100	0	74	48	0	0	51	1.00
2984686--2984727	19	2.2	19	95	0	75	38	0	21	40	1.53
2987262--2987309	24	2.0	24	95	0	87	41	6	16	35	1.74
2997667--2997717	13	3.8	13	78	12	59	62	1	0	35	1.06
2997685--2997721	15	2.5	15	91	4	58	59	2	0	37	1.12
2999128--2999181	13	3.7	14	76	16	56	38	0	0	61	0.96
2999134--2999176	6	7.2	6	80	19	54	34	0	0	65	0.93
2999167--2999223	22	2.7	21	81	10	71	52	1	0	45	1.11
2999668--2999702	9	4.0	9	88	7	54	34	0	0	65	0.93
2999691--2999728	13	2.9	14	84	11	53	39	0	0	60	0.97
2999674--2999731	14	4.0	15	76	13	59	37	0	0	62	0.96
2999681--2999764	36	2.3	34	75	18	80	33	1	2	63	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3001535--3001582	22	2.1	24	84	7	64	31	2	0	66	1.03
3002148--3002224	12	6.3	12	72	13	50	64	3	0	31	1.11
3002174--3002258	8	11.0	8	69	26	51	62	2	0	35	1.08
3002204--3002263	20	3.1	19	74	9	66	53	1	0	45	1.10
3002779--3002813	18	1.9	18	88	0	52	31	5	0	62	1.18
3003300--3003346	11	3.9	13	78	15	57	38	2	4	55	1.31
3003934--3003984	20	2.5	20	83	6	57	37	0	0	62	0.95
3003933--3003991	26	2.3	25	83	11	75	33	0	0	66	0.92
3005531--3005579	16	3.1	16	94	5	82	34	0	10	55	1.34
3005714--3005748	6	5.5	6	93	6	52	45	0	0	54	0.99
3005714--3005756	7	6.3	7	92	7	63	44	0	0	55	0.99
3005896--3005944	20	2.4	21	86	10	66	48	0	0	51	1.00
3006569--3006631	13	4.9	13	74	16	51	34	0	1	63	1.04
3006583--3006652	27	2.6	27	78	13	72	31	1	2	64	1.17
3006568--3006641	16	4.4	17	73	11	55	35	0	1	63	1.03
3011085--3011164	30	2.7	30	80	7	99	45	3	1	50	1.28
3011314--3011359	15	2.9	15	83	9	56	50	2	2	45	1.26
3014286--3014319	9	3.9	9	84	7	52	73	0	0	26	0.83
3014283--3014318	17	2.1	17	100	0	72	69	0	0	30	0.89
3014337--3014387	23	2.2	24	89	10	79	47	0	0	52	1.00
3014434--3014469	18	2.1	18	89	5	56	33	0	0	66	0.92
3016668--3016717	23	2.1	24	85	10	68	66	2	0	32	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3016663--3016705	16	2.7	15	86	13	52	65	0	2	32	1.06
3016668--3016722	12	4.6	12	78	13	51	65	1	0	32	1.03
3016717--3016767	25	2.0	26	84	3	68	50	1	3	43	1.31
3016797--3016821	11	2.3	11	100	0	50	64	0	0	36	0.94
3017225--3017274	14	3.4	14	83	13	57	32	2	0	66	1.03
3018494--3018555	33	1.9	32	83	3	79	58	4	3	33	1.36
3018530--3018591	21	3.0	20	81	15	74	67	1	0	30	1.00
3018581--3018689	14	7.6	14	70	23	68	56	0	0	42	1.05
3018646--3018689	12	3.2	13	84	15	54	63	0	0	36	0.95
3018646--3018696	26	1.9	27	88	4	77	60	0	0	39	0.97
3018572--3018696	27	4.5	27	68	21	80	56	0	0	42	1.04
3018625--3018708	37	2.2	40	81	12	95	58	0	0	41	0.98
3018574--3018702	15	8.9	15	68	18	60	56	0	0	42	1.04
3019671--3019713	18	2.4	18	96	0	77	37	2	0	60	1.10
3024534--3024584	20	2.5	20	81	15	61	56	1	0	41	1.10
3024926--3024976	21	2.4	22	81	15	63	52	7	1	37	1.42
3025519--3025564	23	2.0	23	83	8	58	60	0	2	36	1.09
3026986--3027045	16	3.8	16	78	8	68	60	8	1	30	1.36
3026986--3027090	32	3.2	31	75	17	97	57	8	1	32	1.40
3027729--3027771	22	2.0	21	86	13	61	60	0	0	39	0.97
3028823--3028873	13	4.1	12	77	22	52	50	1	0	47	1.12
3028816--3028873	26	2.2	27	90	9	93	48	1	0	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3029010--3029065	24	2.5	21	80	13	67	66	1	0	32	1.03
3029035--3029068	11	3.1	11	82	0	50	67	0	0	32	0.91
3029259--3029329	29	2.4	29	75	9	72	43	0	1	54	1.08
3030241--3030273	2	16.5	2	100	0	66	48	0	0	51	1.00
3031779--3032012	119	2.0	118	88	2	344	32	20	18	28	1.96
3038752--3038795	21	2.1	21	83	8	54	34	9	2	54	1.44
3040195--3040230	2	18.0	2	94	0	63	50	0	2	47	1.15
3040907--3040970	2	32.0	2	83	0	74	43	6	3	46	1.44
3040902--3040970	24	2.9	24	100	0	138	40	8	4	46	1.55
3042190--3042284	28	3.4	26	69	25	70	63	0	0	36	0.95
3042196--3042262	16	4.2	16	76	14	50	59	0	0	40	0.97
3042732--3042794	20	3.1	20	86	2	81	60	1	0	38	1.07
3042731--3042794	21	3.1	21	84	4	85	60	1	0	37	1.06
3043285--3043336	27	2.0	26	85	11	70	67	0	0	32	0.91
3043847--3044031	34	5.5	34	87	3	257	40	26	7	25	1.82
3048104--3048160	19	3.0	20	87	5	73	38	15	14	31	1.87
3048461--3048643	34	5.4	33	83	7	224	40	25	7	26	1.82
3049400--3049436	5	7.4	5	93	0	65	2	21	0	75	0.92
3051035--3051072	2	19.5	2	94	5	69	47	0	0	52	1.00
3052409--3052434	13	2.0	13	100	0	52	15	0	0	84	0.62
3055883--3056067	34	5.5	34	87	3	257	40	26	7	25	1.82
3060478--3060660	34	5.4	34	86	3	244	40	26	6	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3065095--3065126	4	8.0	4	100	0	64	75	0	0	25	0.81
3066590--3066630	14	2.7	15	88	7	57	63	0	0	36	0.95
3066617--3066678	29	2.2	29	88	2	99	45	0	0	54	0.99
3066642--3066701	21	2.8	21	78	14	68	43	0	0	56	0.99
3066955--3066983	3	9.7	3	100	0	58	68	0	0	31	0.89
3067505--3067538	14	2.5	14	95	4	61	38	0	0	61	0.96
3068092--3068150	14	4.5	14	73	18	56	57	1	0	40	1.09
3068100--3068159	23	2.4	25	86	8	79	60	1	0	38	1.07
3068094--3068176	37	2.2	36	85	8	105	59	1	0	39	1.05
3069909--3069958	2	25.0	2	100	0	100	50	0	0	50	1.00
3070199--3070227	2	14.5	2	100	0	58	0	48	0	51	1.00
3072283--3072323	14	2.7	15	88	7	57	63	0	0	36	0.95
3072310--3072371	29	2.2	29	88	2	99	45	0	0	54	0.99
3072335--3072394	21	2.8	21	78	14	68	43	0	0	56	0.99
3072647--3072675	3	9.7	3	100	0	58	68	0	0	31	0.89
3073197--3073230	14	2.5	14	95	4	61	38	0	0	61	0.96
3073784--3073842	14	4.5	14	73	18	56	57	1	0	40	1.09
3073792--3073851	23	2.4	25	86	8	79	60	1	0	38	1.07
3073786--3073868	37	2.2	36	85	8	105	59	1	0	39	1.05
3075602--3075645	2	22.0	2	100	0	88	50	0	0	50	1.00
3075886--3075914	2	14.5	2	100	0	58	0	48	0	51	1.00
3077969--3078009	14	2.7	15	88	7	57	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3077996--3078057	29	2.2	29	88	2	99	45	0	0	54	0.99
3078021--3078080	21	2.8	21	78	14	68	43	0	0	56	0.99
3078333--3078361	3	9.7	3	100	0	58	68	0	0	31	0.89
3078883--3078916	14	2.5	14	95	4	61	38	0	0	61	0.96
3079470--3079528	14	4.5	14	73	18	56	57	1	0	40	1.09
3079478--3079537	23	2.4	25	86	8	79	60	1	0	38	1.07
3079472--3079554	37	2.2	36	85	8	105	59	1	0	39	1.05
3081288--3081317	2	15.0	2	100	0	60	50	0	0	50	1.00
3081558--3081586	2	14.5	2	100	0	58	0	48	0	51	1.00
3081819--3081850	2	16.0	2	100	0	64	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24