genome.fa.s153.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold153
Parameters: 2 7 7 80 10 50 1000
Length:  3137677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  17  of  24  ( 2803 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2259650--2259695	16	2.8	17	75	18	51	52	0	6	41	1.27
2259621--2259778	32	5.2	32	74	20	103	56	0	3	39	1.17
2259667--2259753	31	3.1	26	71	25	70	54	0	2	43	1.13
2260201--2260254	27	2.0	27	89	7	83	64	0	1	33	1.04
2262009--2262048	17	2.2	19	86	8	57	45	2	0	52	1.14
2262316--2262354	2	19.5	2	100	0	78	51	0	0	48	1.00
2262618--2262693	21	3.3	23	77	18	79	35	1	1	61	1.12
2264567--2264654	23	4.0	23	74	14	87	39	1	0	59	1.05
2264561--2264646	34	2.5	36	77	14	108	41	1	0	56	1.06
2264572--2264660	34	2.8	30	77	14	97	40	1	1	57	1.13
2264561--2264663	31	3.0	32	76	16	91	41	0	0	56	1.12
2265536--2265575	16	2.4	16	87	8	53	55	5	0	40	1.22
2265547--2265577	16	1.9	16	100	0	62	54	0	0	45	0.99
2265963--2266032	26	2.5	26	80	15	70	60	1	0	38	1.06
2266242--2266332	23	3.8	23	73	12	69	63	0	0	36	0.94
2266236--2266329	33	2.8	33	77	19	95	64	0	0	35	0.94
2266241--2266332	8	11.5	8	77	13	66	64	0	0	35	0.94
2267433--2267471	18	2.1	19	90	4	62	10	20	15	53	1.70
2270787--2270833	25	1.9	25	86	4	69	57	0	0	42	0.98
2271334--2271411	32	2.4	32	86	2	111	56	0	2	41	1.13
2271334--2271411	16	4.8	16	69	13	61	56	0	2	41	1.13
2272322--2272395	32	2.3	32	88	0	103	44	5	4	45	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2272346--2272395	16	3.1	16	70	0	55	44	4	2	50	1.32
2273234--2273282	22	2.2	21	82	7	53	55	0	0	44	0.99
2273273--2273327	28	2.0	28	82	7	67	30	0	0	69	0.89
2275602--2276133	261	2.0	266	90	3	853	40	9	8	41	1.68
2277228--2277274	24	1.9	25	82	4	60	55	2	0	42	1.12
2281587--2281616	2	15.0	2	100	0	60	50	0	0	50	1.00
2287990--2288017	14	2.0	14	100	0	56	71	14	0	14	1.15
2288671--2288766	31	3.1	31	75	12	90	47	0	0	52	1.00
2288671--2288737	32	2.2	31	84	10	84	47	0	0	52	1.00
2288702--2288752	19	2.7	19	74	14	52	52	0	0	47	1.00
2289642--2289680	15	2.4	16	87	8	53	48	5	5	41	1.47
2289660--2289722	27	2.3	26	81	7	72	49	4	9	36	1.57
2291032--2291088	29	1.9	30	82	10	73	40	21	1	36	1.63
2296175--2296208	2	17.0	2	93	0	59	50	2	0	47	1.16
2299660--2299701	18	2.3	18	87	0	57	64	2	0	33	1.07
2303421--2303491	18	3.7	18	74	17	63	39	0	0	60	0.97
2303382--2303459	30	2.6	30	84	8	104	37	0	0	62	0.95
2303404--2303509	40	2.5	42	82	14	121	38	0	0	61	0.96
2303361--2303515	71	2.2	72	78	13	169	36	0	0	62	1.00
2303415--2303511	29	3.5	28	77	14	103	37	0	0	62	0.95
2305471--2305504	16	2.1	17	94	5	61	64	0	0	35	0.94
2305472--2305504	11	3.1	11	95	4	59	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2305568--2305616	23	2.1	23	88	0	71	51	2	4	42	1.32
2306215--2306274	23	2.7	22	85	10	70	58	0	0	41	0.98
2308287--2308343	27	2.1	27	83	0	69	40	14	17	28	1.88
2311626--2311663	20	1.9	20	84	10	51	65	2	0	31	1.06
2312228--2312264	10	3.6	10	89	7	56	24	0	0	75	0.80
2312349--2312432	30	2.8	29	83	3	87	46	0	8	45	1.33
2312698--2312759	30	2.1	29	87	3	88	54	0	3	41	1.16
2312725--2312769	22	2.0	22	95	0	81	57	0	2	40	1.11
2312725--2312780	22	2.6	22	88	2	69	58	1	1	37	1.19
2312904--2312973	34	2.1	34	86	5	97	32	7	18	41	1.78
2313413--2313439	13	2.1	13	100	0	54	55	0	0	44	0.99
2313648--2313710	24	2.6	25	72	18	60	53	0	0	46	1.00
2313670--2313711	13	3.4	12	83	12	50	50	0	0	50	1.00
2316324--2316388	19	3.2	21	74	24	68	55	0	0	44	0.99
2316604--2316635	2	16.0	2	93	0	55	46	0	3	50	1.17
2324770--2324974	106	1.9	107	95	1	376	24	15	17	42	1.88
2330882--2330962	16	5.0	15	83	10	90	40	1	0	58	1.06
2330882--2330961	31	2.4	32	82	14	92	41	1	0	57	1.07
2330909--2330989	16	4.8	18	79	11	82	39	0	1	59	1.05
2336278--2336330	15	3.6	14	78	14	54	47	0	0	52	1.00
2336306--2336396	23	4.0	23	64	14	55	49	3	0	47	1.18
2337855--2337902	23	2.1	23	96	0	87	33	10	0	56	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2338021--2338061	21	2.0	21	95	0	73	39	9	14	36	1.79
2338086--2338181	33	3.0	33	76	11	101	62	1	0	36	1.02
2338140--2338187	17	2.7	17	80	6	60	66	0	0	33	0.92
2338099--2338181	32	2.6	31	80	16	98	66	1	0	32	1.00
2338595--2338647	20	2.6	21	80	17	58	49	0	0	50	1.00
2338866--2338897	2	15.5	2	93	6	55	50	0	3	46	1.17
2340567--2340621	17	3.2	17	76	19	51	58	0	0	41	0.98
2340581--2340625	17	2.6	17	80	16	56	55	0	0	44	0.99
2342490--2342536	24	2.0	24	95	0	85	51	0	8	40	1.33
2342481--2342536	24	2.3	25	87	3	71	51	1	7	39	1.40
2342494--2342546	24	2.2	24	83	6	63	56	0	7	35	1.28
2343266--2343347	8	9.8	8	73	21	62	41	1	0	57	1.06
2343256--2343305	26	1.9	26	88	8	75	48	0	0	52	1.00
2343218--2343341	31	4.1	31	74	18	100	41	1	0	56	1.09
2343263--2343354	8	10.9	9	67	28	60	42	1	0	56	1.06
2347195--2347412	117	1.9	117	83	0	283	20	19	33	26	1.97
2348462--2348493	12	2.7	12	95	0	55	78	0	0	21	0.76
2348536--2348575	21	1.9	21	90	10	64	62	0	0	37	0.95
2349124--2349148	4	6.2	4	100	0	50	24	0	0	76	0.80
2349716--2349772	23	2.6	22	78	16	64	29	3	5	61	1.35
2350045--2350079	10	3.4	10	88	7	52	54	0	0	45	0.99
2351064--2351106	17	2.4	19	84	11	63	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2351067--2351106	18	2.3	18	91	4	64	72	0	0	27	0.85
2352003--2352062	15	4.1	15	72	8	61	48	5	0	46	1.24
2352269--2352320	21	2.5	20	84	9	59	44	0	0	55	0.99
2353275--2353305	16	1.9	16	93	0	53	54	0	0	45	0.99
2354666--2354724	15	3.9	15	80	10	66	57	0	0	42	0.98
2354666--2354723	30	1.9	30	86	6	82	58	0	0	41	0.98
2354657--2354736	30	2.7	28	76	14	81	55	0	0	45	0.99
2355156--2355232	38	2.0	38	83	14	97	36	2	1	59	1.19
2355509--2355548	18	2.4	17	84	12	55	52	0	0	47	1.00
2359034--2359082	22	2.2	22	89	7	73	44	0	0	55	0.99
2361622--2361668	24	2.0	23	88	8	69	55	0	0	44	0.99
2362066--2362096	16	1.9	16	93	0	53	54	16	0	29	1.42
2362408--2362489	32	2.9	27	76	16	83	43	0	0	56	0.99
2362440--2362481	19	2.3	19	87	4	59	40	0	0	59	0.97
2362424--2362540	32	3.7	32	75	8	105	36	0	0	62	1.01
2362474--2362533	14	4.1	14	74	18	52	30	1	0	68	0.99
2362440--2362534	26	3.8	25	76	15	74	35	1	0	63	1.02
2362492--2362546	20	2.9	19	76	23	55	29	1	0	69	0.99
2362872--2362911	20	2.0	20	90	9	64	42	0	0	57	0.98
2364215--2364579	151	2.4	148	86	8	504	45	16	16	22	1.85
2365776--2365824	14	3.5	13	86	8	53	42	2	0	55	1.11
2366023--2366054	3	10.7	3	100	0	64	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2372999--2373053	24	2.4	24	80	14	62	56	1	0	41	1.10
2373404--2373469	31	2.0	34	85	8	93	46	6	3	43	1.43
2373422--2373477	16	3.4	16	73	16	53	48	1	3	46	1.30
2374144--2374217	29	2.7	27	88	12	98	44	1	0	54	1.08
2374178--2374220	21	2.0	21	86	4	59	48	0	0	51	1.00
2379733--2379762	15	2.0	15	93	0	51	50	6	30	13	1.67
2381485--2381527	3	14.3	3	100	0	86	67	0	0	32	0.91
2382198--2382264	13	5.0	13	71	20	57	37	0	0	62	0.95
2382190--2382268	23	3.4	23	71	13	63	39	0	1	59	1.06
2382201--2382253	18	2.9	18	83	10	63	37	0	0	62	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24