genome.fa.s153.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold153
Parameters: 2 7 7 80 10 50 1000
Length:  3137677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  8  of  24  ( 2803 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1014027--1014104	40	2.0	39	87	2	111	34	12	12	39	1.82
1015010--1015065	22	2.5	23	91	5	96	16	10	8	64	1.49
1015027--1015072	22	2.2	21	84	7	58	21	10	10	56	1.64
1017505--1017558	22	2.7	19	76	17	56	29	7	0	62	1.22
1017532--1017564	16	2.1	16	88	11	50	33	0	0	66	0.92
1018150--1018195	16	2.9	16	83	0	56	50	0	0	50	1.00
1018154--1018195	21	2.0	21	90	9	68	52	0	0	47	1.00
1018851--1018886	18	2.1	17	89	5	54	30	0	0	69	0.89
1019076--1019199	17	7.2	16	72	20	74	41	0	0	57	1.04
1019203--1019270	21	3.1	22	75	10	68	44	0	1	54	1.09
1019200--1019282	15	5.9	15	70	19	54	48	0	1	50	1.08
1019179--1019253	31	2.5	29	84	4	96	48	0	1	50	1.09
1019179--1019258	29	2.7	28	81	14	99	47	0	1	51	1.08
1019221--1019292	21	3.6	21	74	20	66	48	0	0	51	1.00
1020088--1020128	2	20.5	2	100	0	82	48	0	0	51	1.00
1023434--1023486	12	4.3	12	76	4	52	28	1	0	69	0.99
1024073--1024128	17	3.4	17	75	5	60	64	0	0	35	0.94
1025711--1025751	18	2.3	19	79	12	50	56	0	0	43	0.99
1025722--1025772	22	2.3	21	75	15	50	54	1	0	43	1.11
1028370--1028440	35	2.1	33	82	10	81	50	0	0	49	1.00
1045791--1045849	12	5.2	12	80	15	63	33	1	20	44	1.62
1045791--1045832	22	1.9	22	95	0	75	30	0	21	47	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1051867--1051916	15	3.3	15	81	10	66	76	0	0	24	0.80
1051877--1051910	8	4.2	8	89	10	52	76	0	0	23	0.79
1061057--1061569	169	3.1	167	83	4	622	27	12	8	50	1.71
1061042--1061569	167	3.2	164	83	5	596	27	12	9	50	1.71
1061876--1061942	33	2.0	33	88	0	98	34	11	13	40	1.81
1061896--1061920	13	1.9	13	100	0	50	36	16	16	32	1.90
1061986--1062010	13	1.9	13	100	0	50	32	16	16	36	1.90
1062019--1062139	52	2.3	52	97	0	224	34	18	18	28	1.94
1067489--1068009	154	3.4	155	82	4	593	21	16	22	39	1.92
1071081--1071107	13	2.1	13	100	0	54	29	14	14	40	1.86
1071063--1071125	32	2.0	32	93	0	108	33	12	15	38	1.86
1071063--1071125	19	3.7	18	74	24	64	33	12	15	38	1.86
1084282--1084361	37	2.1	38	90	2	126	32	27	23	16	1.96
1088952--1088984	11	2.8	12	90	4	50	69	0	0	30	0.88
1090414--1090460	11	3.5	15	67	27	50	25	21	6	46	1.74
1090419--1090561	25	5.7	25	64	22	84	28	19	6	44	1.76
1090429--1090595	29	5.2	29	67	22	77	29	20	8	41	1.81
1090429--1090613	101	1.8	101	90	3	300	29	19	8	43	1.79
1090443--1090613	52	3.3	52	71	16	158	29	18	8	43	1.79
1091197--1091249	22	2.4	22	87	0	79	24	49	15	11	1.77
1091197--1091256	22	2.7	22	84	0	66	23	48	15	13	1.79
1091456--1091565	48	2.4	47	80	4	125	26	32	15	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1094268--1094310	14	3.1	13	87	12	59	48	2	0	48	1.14
1094267--1094308	9	4.6	9	88	5	57	50	2	0	47	1.14
1094457--1094500	23	1.9	23	90	0	70	47	27	6	18	1.73
1094456--1094506	23	2.2	22	83	10	66	49	23	5	21	1.71
1094951--1094982	11	2.9	11	95	0	55	31	0	0	68	0.90
1106956--1107004	23	2.2	22	88	3	71	28	2	2	67	1.13
1106963--1107013	23	2.3	22	83	6	66	35	1	0	62	1.06
1107036--1107100	15	4.3	15	75	16	55	44	4	0	50	1.22
1109573--1109624	26	2.0	26	100	0	104	26	23	15	34	1.94
1110980--1111004	13	1.9	13	100	0	50	32	16	16	36	1.90
1113688--1113741	20	2.7	20	88	5	74	37	20	12	29	1.90
1113771--1113827	19	3.0	20	80	12	75	35	15	17	31	1.92
1116349--1116374	13	2.0	13	100	0	52	38	15	15	30	1.88
1120908--1120938	3	10.3	3	92	0	53	29	35	0	35	1.58
1122446--1122499	20	2.7	20	83	11	67	35	16	14	33	1.90
1122527--1122582	20	2.8	21	89	10	82	33	19	14	32	1.92
1122446--1122664	83	2.7	83	94	2	379	33	16	18	30	1.94
1122611--1122666	19	2.9	19	91	2	85	35	16	17	30	1.92
1122651--1122677	13	2.1	13	100	0	54	40	14	14	29	1.86
1126297--1126373	20	3.9	19	74	14	75	40	12	16	29	1.86
1127271--1127712	28	15.5	28	82	6	476	24	16	29	29	1.96
1127271--1127712	57	7.7	57	84	4	525	24	16	29	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1127271--1127712	85	5.2	85	81	6	514	24	16	29	29	1.96
1128929--1128977	10	4.6	10	80	7	53	2	4	10	83	0.85
1139932--1140004	18	3.9	18	71	25	71	35	15	15	34	1.88
1139946--1140026	15	6.4	12	73	26	62	38	14	14	32	1.87
1139946--1140026	26	3.2	26	81	16	107	38	14	14	32	1.87
1142544--1142613	28	2.5	28	88	0	95	24	17	35	22	1.95
1142604--1142940	52	6.4	52	68	17	185	31	12	26	29	1.93
1142756--1142831	27	2.8	28	89	2	109	21	21	34	23	1.97
1142537--1142942	212	1.9	212	90	3	647	31	13	27	27	1.94
1142819--1142937	51	2.3	53	85	7	154	33	11	22	31	1.90
1145303--1145328	13	2.0	13	100	0	52	38	15	15	30	1.88
1145282--1145348	33	2.0	33	88	0	98	43	16	14	25	1.86
1145368--1145467	19	5.9	18	73	26	103	38	15	12	35	1.84
1145390--1145446	13	3.9	13	76	24	60	35	15	14	35	1.88
1145371--1145465	32	3.0	32	98	0	181	36	15	12	34	1.86
1145503--1145580	21	3.8	21	86	8	115	33	11	15	39	1.83
1145503--1145584	41	2.0	40	88	6	121	34	10	15	39	1.83
1150380--1150408	13	2.2	13	100	0	58	27	13	17	41	1.87
1152261--1152335	35	2.2	34	92	2	123	34	2	30	32	1.72
1152270--1152331	18	3.5	18	69	18	58	30	1	33	33	1.68
1152889--1152945	19	2.9	19	89	5	78	29	17	17	35	1.93
1152975--1153093	20	6.7	19	70	29	102	35	14	18	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1152994--1153126	13	12.2	12	65	31	77	36	13	18	31	1.89
1152974--1153073	33	3.0	33	94	5	168	35	14	18	33	1.90
1153008--1153126	53	2.2	53	100	0	238	36	13	18	31	1.89
1153061--1153126	33	2.0	32	88	11	98	36	13	18	31	1.90
1157255--1157326	20	3.6	19	77	7	81	40	12	15	31	1.84
1163449--1163520	20	3.6	20	77	5	65	36	13	11	38	1.81
1168999--1169023	13	1.9	13	100	0	50	36	16	16	32	1.90
1169086--1169110	13	1.9	13	100	0	50	32	16	16	36	1.90
1169119--1169247	52	2.5	52	93	0	222	34	16	17	31	1.92
1172912--1172962	20	2.5	20	83	3	57	43	19	3	33	1.70
1174213--1174602	29	13.7	29	77	5	278	25	13	28	32	1.93
1174623--1174698	37	2.1	37	87	2	109	22	15	28	32	1.95
1174659--1174766	29	3.8	29	80	8	132	23	14	30	31	1.94
1175159--1175245	13	6.7	13	73	13	63	32	17	14	35	1.90
1175159--1175245	25	3.3	26	75	13	81	32	17	14	35	1.90
1175208--1175247	14	2.9	14	88	7	55	25	15	17	42	1.88
1181745--1181818	20	3.8	20	80	1	96	40	14	12	32	1.83
1182760--1182872	32	3.6	31	86	5	156	23	22	27	26	1.99
1182784--1183400	84	7.2	85	81	6	604	23	18	29	28	1.98
1182847--1183432	28	20.7	28	84	5	594	23	18	30	27	1.98
1184007--1184055	24	2.0	24	96	0	89	22	24	20	32	1.98
1184647--1184711	11	6.2	10	76	18	62	1	3	10	84	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1188263--1188287	13	1.9	13	100	0	50	40	4	16	40	1.67
1198782--1198890	20	5.4	20	78	3	121	40	14	13	31	1.85
1198632--1198818	51	3.7	51	85	1	241	45	11	15	27	1.81
1198785--1198890	41	2.7	40	91	4	178	38	15	14	32	1.87
1210985--1211036	20	2.5	21	87	3	70	28	15	15	40	1.88
1211918--1211965	2	24.0	2	84	0	51	39	0	8	52	1.32
1212518--1212565	15	3.4	15	81	16	50	64	2	0	33	1.05
1212910--1212951	21	2.0	22	85	4	59	30	11	19	38	1.88
1214086--1214279	80	2.5	81	93	6	332	47	3	10	38	1.53
1216079--1216132	20	2.5	22	80	19	62	40	1	14	42	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24