genome.fa.s153.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold153
Parameters: 2 7 7 80 10 50 1000
Length:  3137677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  3  of  24  ( 2803 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350189--350463	130	2.1	128	82	5	324	29	26	13	31	1.93
350315--350623	158	2.0	158	85	2	424	28	24	14	33	1.94
356783--357411	61	10.5	61	85	6	783	25	26	19	28	1.99
356777--357395	60	10.4	56	85	7	516	25	26	19	27	1.99
357415--357550	55	2.5	55	82	5	170	27	27	22	22	1.99
357271--357693	149	2.8	148	86	3	578	26	28	19	25	1.99
357467--357653	94	2.0	93	87	5	270	24	30	18	26	1.98
357570--357822	61	4.3	61	82	8	283	25	26	20	26	1.99
357595--357815	122	1.8	121	89	2	345	25	27	19	27	1.99
357808--357935	42	3.0	42	80	5	123	18	27	12	41	1.87
358746--358905	20	7.8	20	68	25	86	31	15	13	40	1.86
358768--358796	13	2.2	13	100	0	58	27	13	17	41	1.87
358748--358813	33	2.0	33	93	0	114	30	15	13	40	1.85
364702--364870	51	3.3	50	73	11	128	30	27	11	30	1.92
364809--364981	79	2.2	79	84	2	222	28	23	14	33	1.94
364809--365029	79	2.8	79	81	4	207	28	22	14	34	1.93
365071--365187	51	2.3	50	80	10	139	34	24	9	31	1.87
365123--365338	78	2.7	78	83	7	276	31	24	11	33	1.91
371496--372448	60	15.5	61	84	4	1148	24	29	19	26	1.98
371496--372443	121	7.7	121	84	4	1143	24	29	19	26	1.99
371503--372438	184	5.1	182	87	3	1234	24	28	19	26	1.99
372506--372733	58	4.0	55	80	9	249	27	25	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372506--372733	113	2.0	114	84	8	302	27	25	19	27	1.99
372749--373079	61	5.4	62	84	2	418	25	27	18	28	1.98
372755--373079	123	2.6	123	89	0	490	25	27	19	27	1.99
372749--373088	184	1.8	184	84	1	466	24	27	18	28	1.98
373875--373968	20	4.7	20	86	5	127	28	14	13	42	1.85
373874--373969	40	2.4	40	86	5	140	29	15	13	41	1.85
376364--376590	79	2.9	78	78	11	230	29	23	12	34	1.92
376628--376741	51	2.2	51	83	6	142	36	22	7	33	1.81
376680--376897	79	2.8	79	84	2	269	31	24	11	33	1.91
379000--379313	66	4.8	66	78	3	159	40	19	22	17	1.91
379039--379268	66	3.5	66	79	3	203	39	19	23	18	1.92
379039--379318	131	2.1	132	82	2	321	39	19	23	18	1.92
379096--379841	65	11.6	66	74	8	260	41	19	23	16	1.90
379416--379854	65	6.8	65	80	1	405	42	19	23	15	1.89
379575--379675	32	3.2	31	73	16	98	43	12	23	19	1.86
379450--379826	129	2.9	130	77	2	353	42	18	22	15	1.88
379863--379929	34	2.0	34	90	0	107	46	10	11	31	1.75
380395--380678	76	3.8	76	79	8	260	46	13	13	26	1.81
381858--382127	110	2.4	111	79	4	269	36	13	15	34	1.87
383744--383774	16	1.9	16	93	0	53	6	45	0	48	1.28
389205--389234	12	2.5	12	100	0	60	73	0	0	26	0.84
389711--389805	47	2.0	47	100	0	190	51	14	25	8	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
390106--390132	13	2.1	13	100	0	54	51	40	7	0	1.30
394439--394473	3	11.7	3	87	0	52	28	31	0	40	1.57
394437--394475	12	3.2	12	85	0	60	25	30	0	43	1.55
398544--398641	19	5.8	18	67	28	72	36	15	13	34	1.86
398539--398639	32	3.1	32	92	1	166	35	15	12	35	1.86
398563--398587	13	1.9	13	100	0	50	32	16	16	36	1.90
400709--400755	10	4.6	10	82	12	60	2	17	0	80	0.80
400689--400770	41	2.0	40	81	11	96	4	15	2	76	1.06
400728--400757	12	2.5	12	88	0	51	0	16	0	83	0.65
402488--402585	47	2.1	47	92	0	160	33	17	14	34	1.90
404362--404854	157	3.1	155	80	7	534	38	20	15	25	1.92
406785--407191	153	2.7	152	86	5	527	49	9	7	32	1.65
408630--408684	20	2.8	20	91	0	92	38	14	10	36	1.81
408670--408700	13	2.4	13	94	0	53	41	9	16	32	1.80
408746--408772	13	2.1	13	100	0	54	40	14	14	29	1.86
411287--411312	13	2.0	13	100	0	52	38	15	15	30	1.88
417470--417525	19	2.9	19	86	2	67	35	16	14	33	1.88
418185--418259	19	3.8	19	82	8	80	30	17	18	33	1.94
422576--422629	19	2.7	19	82	5	63	37	16	9	37	1.81
423389--424481	101	10.9	101	90	2	1507	33	17	25	23	1.96
423273--424481	254	4.8	254	89	3	1563	33	17	25	23	1.96
423335--424481	355	3.2	350	88	3	1674	33	17	25	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424344--424481	43	3.1	43	83	10	186	30	17	26	26	1.97
424554--424607	27	2.0	27	92	7	92	29	14	33	22	1.94
424574--424732	34	4.8	33	73	14	107	34	13	30	21	1.92
424656--424824	30	5.5	31	81	6	159	30	16	28	24	1.96
424712--424825	30	3.8	30	88	1	165	28	18	28	25	1.98
424712--424825	60	1.9	61	90	1	185	28	18	28	25	1.98
425856--425880	11	2.3	11	100	0	50	0	0	16	84	0.63
427459--427484	13	2.0	13	100	0	52	30	15	15	38	1.88
429882--430127	51	4.8	51	83	3	280	32	24	9	33	1.88
430012--430258	130	1.9	130	82	5	311	29	27	12	30	1.93
430148--430289	51	2.8	51	86	4	171	30	28	8	32	1.87
430195--430500	130	2.3	130	74	10	309	27	24	12	35	1.91
436718--436907	61	3.1	61	86	3	229	23	31	18	26	1.97
436781--437197	155	2.7	155	88	5	620	26	30	18	24	1.98
436596--437062	218	2.2	216	84	3	600	24	29	18	26	1.98
436936--437062	61	2.1	61	92	0	209	24	31	18	25	1.97
437066--437264	54	3.5	54	80	14	240	26	26	20	26	1.99
436911--437688	209	3.7	210	84	7	1054	26	29	18	25	1.98
437092--437264	61	3.0	60	80	9	232	26	26	20	26	1.99
437123--437428	154	2.0	156	88	2	465	25	28	19	27	1.99
437299--437472	63	2.8	61	84	5	217	27	29	18	25	1.98
437299--437488	61	3.1	61	86	3	238	25	30	17	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436936--437719	426	1.8	428	91	2	1317	25	29	18	26	1.98
437492--437683	55	3.4	55	80	8	208	28	28	18	25	1.98
437519--437701	62	3.1	61	79	10	218	25	27	18	28	1.98
437667--437850	85	2.2	80	83	9	221	21	27	14	36	1.92
437670--437941	43	6.4	43	76	14	255	19	26	14	38	1.90
441184--441396	51	4.2	51	86	1	268	30	23	11	34	1.90
441413--441547	51	2.6	51	82	2	155	30	28	12	28	1.93
441452--441560	51	2.1	51	89	1	164	29	26	11	33	1.91
441463--441738	130	2.1	132	78	6	285	27	24	13	34	1.93
447512--447590	32	2.5	32	89	2	115	34	20	11	34	1.88
453038--453065	13	2.2	13	100	0	56	28	14	17	39	1.89
455425--455451	13	2.1	13	100	0	54	29	14	14	40	1.86
455437--455492	19	2.8	21	86	8	80	33	14	17	33	1.90
455521--455547	13	2.1	13	100	0	54	29	14	14	40	1.86
460721--460790	34	2.1	34	100	0	140	37	11	5	45	1.64
461092--461138	24	2.0	24	95	0	85	29	14	17	38	1.89
462969--463007	17	2.2	18	86	13	55	53	0	0	46	1.00
463046--463094	23	2.2	21	82	7	53	38	0	0	61	0.96
463046--463098	21	2.4	21	84	6	61	37	0	0	62	0.96
463373--463401	15	2.0	15	93	6	51	55	0	0	44	0.99
464009--464042	17	2.0	17	88	11	52	35	0	0	64	0.94
464032--464079	26	1.9	24	87	8	69	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464003--464108	16	6.9	16	69	24	52	49	0	0	50	1.00
464014--464092	32	2.5	30	84	12	88	45	0	0	54	0.99
464043--464098	10	5.4	10	74	16	51	53	0	0	46	1.00
464311--464447	47	2.8	46	75	14	114	48	1	0	49	1.10
465107--465161	20	2.7	20	83	10	67	27	0	1	70	0.97
466014--466057	20	2.2	20	84	8	54	56	0	0	43	0.99
466287--466332	22	2.1	22	84	8	58	52	0	0	47	1.00
466639--466683	20	2.2	21	84	7	58	60	0	2	37	1.09
467627--467712	24	3.2	26	73	17	79	51	0	0	48	1.00
467645--467715	13	5.6	13	78	5	65	54	0	0	45	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24