genome.fa.s153.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold153
Parameters: 2 7 7 80 10 50 1000
Length:  3137677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  24  of  24  ( 2803 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3086059--3086177	58	2.1	56	82	14	138	50	5	4	39	1.46
3091320--3091356	9	4.0	9	89	3	56	2	43	0	54	1.14
3091352--3091377	12	2.2	12	100	0	52	0	7	0	92	0.39
3091355--3091379	13	1.9	13	100	0	50	0	8	0	92	0.40
3091847--3091892	20	2.2	20	84	3	56	28	4	0	67	1.10
3091856--3091880	13	1.9	13	100	0	50	28	0	0	72	0.86
3092710--3092789	32	2.5	33	83	2	108	45	1	1	52	1.16
3092791--3092826	14	2.5	15	90	4	56	66	2	0	30	1.06
3093140--3093195	3	19.0	3	96	3	105	66	0	0	33	0.92
3093727--3093884	78	2.0	78	95	0	280	43	8	17	30	1.79
3093852--3093952	48	2.1	48	98	0	193	29	5	18	45	1.73
3094776--3096621	606	3.0	607	91	2	2872	34	20	19	26	1.96
3098711--3098737	2	13.5	2	100	0	54	48	0	0	51	1.00
3098718--3098772	28	2.0	27	86	6	76	49	0	3	47	1.19
3098723--3098876	57	2.6	57	79	11	177	46	0	5	47	1.29
3098873--3098897	11	2.3	11	100	0	50	36	0	0	64	0.94
3098894--3098954	12	5.0	12	73	2	50	27	0	1	70	0.97
3098877--3098954	24	3.3	23	76	11	79	29	0	1	69	0.97
3100162--3100200	20	1.9	20	84	5	51	35	2	10	51	1.50
3103829--3103862	2	17.0	2	100	0	68	0	50	0	50	1.00
3104706--3104768	23	2.7	24	83	11	78	41	0	0	58	0.98
3105098--3105171	38	1.9	38	89	5	114	33	16	20	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3106456--3106484	12	2.4	12	100	0	58	34	13	34	17	1.89
3109664--3109716	17	3.2	17	71	10	56	47	0	0	52	1.00
3109666--3109741	33	2.3	34	88	6	120	47	0	1	51	1.09
3109663--3109737	32	2.3	33	90	2	125	48	0	1	50	1.09
3109787--3109843	24	2.5	22	82	5	69	38	1	0	59	1.08
3110577--3110636	18	3.2	18	73	23	52	53	0	1	45	1.10
3111938--3111962	13	1.9	13	100	0	50	40	8	0	52	1.31
3113276--3113320	2	22.5	2	100	0	90	0	48	0	51	1.00
3118725--3118757	13	2.6	13	90	4	50	60	0	0	39	0.97
3123686--3123735	24	2.0	25	92	3	84	46	0	0	54	1.00
3123688--3123741	24	2.2	24	86	3	72	46	1	1	50	1.23
3123760--3123831	21	3.6	19	71	23	51	38	0	1	59	1.06
3123777--3123832	20	2.9	20	72	15	55	33	0	1	64	1.04
3123785--3123850	16	4.3	15	71	24	50	30	0	1	68	0.99
3123784--3123850	22	3.0	22	74	22	68	31	0	1	67	1.00
3123791--3123854	24	2.6	24	80	9	67	31	0	1	67	1.00
3125175--3125205	10	3.0	10	95	4	53	51	0	0	48	1.00
3125176--3125208	15	2.1	16	88	5	50	45	0	0	54	0.99
3129145--3129182	20	1.9	20	94	0	67	44	10	7	36	1.68
3135358--3135398	22	1.9	21	85	14	57	46	4	0	48	1.23
3135404--3135434	16	1.9	16	93	0	53	41	0	0	58	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24

The End!