genome.fa.s153.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold153
Parameters: 2 7 7 80 10 50 1000
Length:  3137677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  22  of  24  ( 2803 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2856860--2856930	13	4.5	16	68	20	51	56	0	0	43	0.99
2856892--2856938	13	3.6	13	75	11	51	68	0	0	31	0.90
2856893--2856930	18	2.1	18	85	9	51	63	0	0	36	0.95
2856883--2856942	26	2.3	26	82	8	77	60	0	0	40	0.97
2856848--2856923	22	3.4	22	66	12	55	55	0	0	44	0.99
2857456--2857508	27	2.0	25	85	7	70	54	0	0	45	0.99
2862006--2862363	176	2.0	174	84	6	465	44	6	19	30	1.75
2867439--2867476	3	12.7	3	94	0	67	65	0	0	34	0.93
2868024--2868063	21	1.9	21	85	10	55	55	0	0	45	0.99
2870007--2870035	14	2.0	15	93	6	51	62	0	0	37	0.96
2870114--2870147	16	2.0	18	88	11	54	76	0	2	20	0.92
2872318--2872364	23	2.1	23	84	7	62	40	0	2	57	1.11
2874095--2874130	16	2.2	17	90	5	56	38	0	0	61	0.96
2874096--2874142	18	2.6	17	78	18	51	42	0	0	57	0.98
2876214--2876249	18	1.9	19	88	5	56	44	0	0	55	0.99
2877773--2877908	51	2.6	50	79	6	148	35	13	23	27	1.93
2877840--2878334	79	6.3	79	95	0	873	31	14	26	27	1.95
2878286--2878361	27	2.8	28	89	2	109	21	21	34	23	1.97
2879574--2879815	35	6.9	35	95	2	423	20	29	5	44	1.75
2879829--2879855	6	4.5	6	100	0	54	29	0	14	55	1.40
2880440--2880539	36	2.8	36	87	1	137	41	16	21	22	1.90
2880505--2880618	45	2.5	45	92	2	185	35	12	29	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2880601--2881848	55	21.3	61	76	14	567	25	19	27	26	1.99
2881036--2881848	55	14.4	55	87	5	1022	22	21	28	27	1.99
2881036--2881821	172	4.7	167	87	4	1048	22	21	28	27	1.99
2882853--2882909	13	3.9	13	72	24	51	35	12	17	35	1.87
2882833--2882933	32	3.1	32	94	1	175	34	10	17	36	1.85
2882831--2882928	19	5.8	18	71	28	90	33	11	17	37	1.85
2882971--2882995	13	1.9	13	100	0	50	32	16	16	36	1.90
2883004--2883132	52	2.5	52	98	0	249	34	18	18	27	1.95
2891418--2891908	79	6.2	78	94	1	802	32	15	25	27	1.95
2893154--2893361	35	5.9	35	90	3	330	19	28	5	46	1.71
2893371--2893399	12	2.3	13	94	5	51	27	0	3	68	1.05
2893941--2893987	3	15.7	3	95	0	85	65	2	0	31	1.04
2895218--2895243	3	8.7	3	100	0	52	0	30	34	34	1.58
2895591--2895812	123	1.8	123	90	2	356	19	15	24	40	1.90
2897071--2897159	46	1.9	46	86	8	128	42	1	14	41	1.53
2898132--2898209	22	3.2	24	73	14	70	35	2	1	60	1.19
2898154--2898188	16	2.1	17	94	5	63	34	0	0	65	0.93
2901037--2901075	2	19.5	2	100	0	78	48	0	0	51	1.00
2901381--2901438	15	3.9	15	73	13	57	58	0	0	41	0.98
2901468--2901547	38	2.0	38	85	11	106	52	1	0	46	1.08
2901474--2901547	39	1.9	37	86	10	105	51	1	0	47	1.09
2902362--2902589	42	5.6	39	73	17	171	19	14	27	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2902362--2902589	123	1.9	123	92	0	384	19	14	27	39	1.90
2904178--2904266	46	1.9	46	86	4	126	37	3	16	42	1.65
2904629--2904668	19	2.0	19	85	9	53	45	2	0	52	1.14
2906175--2906231	30	1.9	29	86	10	80	33	5	7	54	1.50
2906248--2906309	25	2.4	25	78	15	63	41	6	1	50	1.38
2907455--2907493	18	2.2	18	86	9	53	64	2	2	30	1.21
2909357--2909415	24	2.4	24	77	2	64	59	3	0	37	1.14
2911856--2911880	7	3.6	7	100	0	50	0	12	0	88	0.53
2912263--2912484	42	5.4	41	72	17	169	37	27	15	19	1.92
2912263--2912486	81	2.7	80	74	14	190	37	27	15	20	1.92
2912263--2912490	123	1.9	123	90	0	366	37	27	15	19	1.92
2913492--2913538	20	2.4	21	86	10	64	55	2	0	42	1.12
2914880--2914909	2	15.0	2	100	0	60	50	0	0	50	1.00
2917246--2917473	42	5.6	39	73	17	171	19	14	27	39	1.90
2917246--2917473	123	1.9	123	92	0	384	19	14	27	39	1.90
2919061--2919148	46	1.9	46	88	0	131	39	3	12	44	1.59
2921003--2921058	30	2.0	29	86	10	80	33	5	5	55	1.45
2921068--2921129	25	2.4	25	78	15	63	38	6	4	50	1.50
2922859--2923086	42	5.6	38	73	14	163	38	26	14	19	1.91
2922859--2923086	123	1.9	123	93	0	393	38	26	14	19	1.91
2926671--2926898	42	5.6	38	72	18	149	19	13	27	39	1.89
2926671--2926898	123	1.9	123	91	0	375	19	13	27	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2927768--2927806	18	2.1	18	85	9	51	56	2	5	35	1.35
2928612--2929137	266	2.0	262	85	2	712	30	11	10	47	1.73
2930272--2930313	14	3.0	14	80	10	50	35	0	0	64	0.94
2930270--2930362	32	2.8	33	82	8	107	39	0	2	58	1.10
2935828--2935874	22	2.1	21	88	11	67	46	0	0	53	1.00
2936233--2936278	22	2.1	22	100	0	92	36	13	13	36	1.83
2936873--2937103	42	5.6	42	77	13	185	20	15	24	39	1.91
2937007--2937102	42	2.3	42	100	0	192	18	19	22	38	1.93
2936875--2937138	123	2.1	122	81	10	290	20	15	23	39	1.91
2939556--2939598	16	2.6	17	78	14	54	41	27	2	27	1.68
2941027--2941071	21	2.4	19	80	20	58	37	4	0	57	1.19
2941058--2941103	17	2.7	16	83	12	56	41	0	0	58	0.98
2941151--2941186	13	2.6	14	86	8	56	33	0	0	66	0.92
2942253--2942286	16	2.1	16	88	0	50	67	0	0	32	0.91
2942663--2942687	7	3.6	7	100	0	50	0	12	0	88	0.53
2943071--2943292	42	5.4	41	72	17	169	37	27	15	19	1.92
2943071--2943294	81	2.7	80	74	14	190	37	27	15	20	1.92
2943071--2943298	123	1.9	123	90	0	366	37	27	15	19	1.92
2943811--2943847	6	6.5	6	93	3	51	2	0	10	86	0.67
2944297--2944346	20	2.5	20	87	9	68	56	2	0	42	1.11
2945693--2945718	2	13.0	2	100	0	52	50	0	0	50	1.00
2947183--2947242	21	3.0	20	73	14	52	55	3	0	41	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2948054--2948281	42	5.6	39	73	17	171	19	14	27	39	1.90
2948054--2948281	123	1.9	123	92	0	384	19	14	27	39	1.90
2949871--2949958	46	1.9	46	88	0	131	39	3	12	44	1.59
2950313--2950352	19	2.0	19	85	9	53	45	2	0	52	1.14
2951827--2951882	30	2.0	29	86	10	80	33	5	5	55	1.45
2951892--2951953	25	2.4	25	78	15	63	38	6	4	50	1.50
2953676--2953903	42	5.6	38	73	14	163	38	26	14	19	1.91
2953676--2953903	123	1.9	123	93	0	393	38	26	14	19	1.91
2955000--2955078	42	2.0	41	82	7	99	21	16	24	37	1.93
2955011--2955116	42	2.7	38	80	13	115	16	15	29	38	1.89
2959008--2959043	2	18.0	2	94	0	63	47	0	2	50	1.15
2959927--2960184	140	1.8	140	85	1	365	34	19	16	29	1.94
2962267--2962311	2	22.5	2	100	0	90	51	0	0	48	1.00
2963548--2963594	22	2.1	21	88	11	67	46	0	0	53	1.00
2964570--2964800	42	5.6	42	76	13	176	20	16	24	38	1.92
2964568--2964835	123	2.2	122	83	10	316	20	16	24	39	1.91
2964704--2964799	42	2.3	42	100	0	192	18	19	22	38	1.93
2967249--2967291	16	2.6	17	78	14	54	41	27	2	27	1.68
2968848--2968883	13	2.6	14	86	8	56	33	0	0	66	0.92
2969951--2969983	16	2.1	16	88	5	50	66	0	0	33	0.92
2971856--2971907	22	2.4	22	87	6	70	44	0	0	55	0.99
2972975--2973079	42	2.5	42	93	0	174	21	17	23	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2973017--2973242	123	1.8	123	89	1	355	21	15	25	38	1.92
2972975--2973242	42	6.5	42	72	15	170	21	14	25	38	1.92
2974100--2974138	20	2.0	20	89	0	60	51	7	2	38	1.44
2975734--2975759	11	2.4	11	100	0	52	26	0	0	73	0.84
2975770--2975812	20	2.0	22	86	13	63	53	0	0	46	1.00
2979290--2979332	16	2.6	17	79	20	56	53	0	0	46	1.00
2980500--2980530	14	2.3	13	94	5	53	29	9	0	61	1.28
2980520--2980594	5	15.0	5	77	17	59	41	0	1	57	1.07
2980613--2980658	23	2.0	23	83	8	58	58	0	0	41	0.98
2981431--2981589	79	2.0	79	90	2	248	23	18	6	51	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24