genome.fa.s232.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold232
Parameters: 2 7 7 80 10 50 1000
Length:  2516017

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  3  of  16  ( 1878 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324093--324152	1	60.0	1	76	0	57	88	6	5	0	0.63
324095--324150	8	6.9	8	88	11	69	87	7	5	0	0.67
324093--324152	26	2.4	25	88	2	84	88	6	5	0	0.63
325275--325412	61	2.3	58	82	12	154	28	25	18	28	1.98
325304--325985	221	3.0	220	87	7	944	24	27	18	29	1.98
325660--325763	55	1.9	54	96	2	190	28	28	19	23	1.98
325767--326125	61	5.7	59	77	15	301	24	27	20	28	1.99
325896--326120	122	1.9	121	88	2	344	24	27	20	26	1.99
326141--326241	42	2.4	42	81	5	114	16	24	11	46	1.81
327005--327030	13	2.0	13	100	0	52	30	15	15	38	1.88
327446--327532	20	4.3	20	76	5	77	44	13	9	32	1.76
328032--328057	13	2.0	13	100	0	52	15	0	0	84	0.62
328591--328649	32	1.9	30	82	6	73	27	13	27	32	1.94
328408--328935	238	2.2	236	84	3	682	25	17	27	29	1.97
328409--328932	266	2.0	264	79	6	576	25	17	27	29	1.97
328690--329071	153	2.5	153	82	3	466	23	17	30	28	1.97
328408--329071	28	22.2	29	71	12	355	25	17	28	29	1.97
329048--329177	27	4.6	27	73	10	98	29	12	32	26	1.92
329064--329177	59	1.9	59	85	0	156	29	13	32	24	1.93
337513--337653	40	3.5	40	92	0	230	42	9	12	35	1.75
339556--339589	3	11.3	3	100	0	68	67	0	0	32	0.91
340242--340307	21	3.2	20	80	8	69	37	22	4	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340814--340844	7	4.6	7	96	4	55	90	0	9	0	0.46
341568--341592	9	2.8	9	100	0	50	52	0	0	48	1.00
342133--342399	110	2.4	110	79	12	273	36	14	13	34	1.86
342308--342490	97	1.9	96	84	2	242	36	13	14	36	1.85
342404--342611	110	1.9	110	86	0	299	34	12	17	35	1.88
343713--343739	13	2.1	13	100	0	54	22	14	48	14	1.81
343360--344819	729	2.0	730	97	0	2769	36	16	12	34	1.86
346757--346788	16	2.1	15	94	5	55	71	3	25	0	1.00
351166--351226	19	3.6	18	70	25	60	39	18	9	32	1.83
351156--351232	32	2.4	32	88	2	118	38	16	10	33	1.83
354630--354692	29	2.2	28	81	8	74	49	0	0	50	1.00
354666--354705	18	2.2	19	86	4	55	45	0	0	55	0.99
354639--354701	29	2.2	29	82	5	74	49	0	0	50	1.00
354687--354725	10	3.6	11	86	13	55	48	0	0	51	1.00
354687--354725	6	7.2	6	78	21	50	48	0	0	51	1.00
354691--354728	16	2.4	16	91	4	60	55	0	0	44	0.99
356991--357040	25	2.0	25	100	0	100	24	8	16	52	1.70
359742--359794	26	2.1	25	82	3	61	32	24	16	26	1.97
360365--360416	16	3.2	16	74	15	54	51	0	0	48	1.00
360374--360428	17	3.4	17	73	16	53	58	0	0	41	0.98
360303--360446	62	2.2	66	77	20	146	55	2	1	40	1.20
360756--360788	13	2.4	14	90	5	50	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361378--361415	14	3.0	13	82	17	53	0	15	5	78	0.91
361782--361818	19	1.9	19	88	0	56	67	0	0	32	0.91
363028--363080	20	2.6	21	82	5	65	33	11	16	37	1.85
363311--364236	315	2.9	316	94	2	1603	37	11	9	41	1.74
365402--365455	27	2.0	27	89	7	83	48	25	5	20	1.71
371958--372031	21	3.6	21	80	14	73	29	18	13	37	1.90
377848--377872	13	1.9	13	100	0	50	24	8	20	48	1.76
379808--379852	21	2.1	21	83	0	54	37	13	13	35	1.84
380442--380466	2	12.5	2	100	0	50	48	0	0	52	1.00
383693--383742	25	2.0	24	85	11	66	38	4	0	58	1.17
385366--385433	20	3.8	18	78	18	70	52	0	2	44	1.16
385875--385959	41	2.0	42	97	2	163	31	0	7	61	1.23
386621--386645	4	6.2	4	100	0	50	24	0	0	76	0.80
387193--387222	6	5.0	6	95	0	51	30	0	0	70	0.88
388779--388845	20	3.3	20	81	4	73	65	0	1	32	1.02
388775--388858	28	3.0	28	75	16	77	63	0	1	35	1.03
388811--388852	19	2.2	20	91	8	70	64	0	0	35	0.94
392488--392585	50	2.0	50	89	4	153	17	18	3	61	1.47
396135--396213	34	2.4	33	80	2	86	26	8	7	56	1.56
396885--396930	19	2.2	23	85	14	64	28	6	4	60	1.40
397436--397490	22	2.4	24	76	17	62	45	9	0	45	1.35
409514--409544	15	2.1	15	93	0	53	32	29	38	0	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412668--412702	3	11.7	3	100	0	70	68	0	0	31	0.90
419743--419869	65	2.0	64	84	7	168	29	17	11	41	1.84
421967--422105	52	2.7	52	85	3	174	30	15	12	41	1.84
421967--422097	51	2.5	51	86	3	156	30	16	12	41	1.84
424632--424683	19	2.7	20	93	3	88	36	13	19	30	1.90
424670--424727	13	5.0	12	70	21	52	36	15	15	32	1.89
424685--424749	20	3.6	20	71	26	72	40	13	15	30	1.86
424653--424750	33	3.0	33	92	1	153	37	14	16	31	1.88
428383--428410	13	2.2	13	100	0	56	39	17	14	28	1.89
428365--428430	33	2.0	33	88	5	98	40	13	15	30	1.85
429207--430099	101	9.4	101	87	4	894	32	18	25	24	1.97
429304--429740	52	8.6	52	79	5	475	34	17	24	23	1.96
429708--430041	39	7.8	39	73	19	258	28	20	26	24	1.99
429658--430094	88	5.0	88	91	1	664	29	19	25	24	1.99
429931--430099	48	3.7	48	77	14	203	30	19	26	23	1.98
430105--430181	28	2.6	29	73	6	75	20	19	23	36	1.95
430179--431832	33	54.1	33	77	14	1033	32	13	31	21	1.92
430609--430666	27	2.2	26	78	6	62	36	12	31	20	1.89
430227--431832	149	10.6	148	83	9	1365	32	13	32	21	1.92
430669--431741	116	9.1	109	80	15	742	30	13	32	22	1.93
431707--431840	34	4.0	34	84	4	166	35	12	31	20	1.90
431707--431961	31	8.1	32	81	8	195	33	14	29	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431061--431956	60	15.0	61	74	16	237	30	14	32	22	1.94
433234--433276	9	4.6	9	82	8	50	0	0	18	81	0.69
433232--433300	30	2.3	31	87	7	97	0	0	15	84	0.63
433234--433295	18	3.3	19	82	15	67	0	0	17	82	0.67
433246--433298	9	5.8	9	82	12	72	0	0	13	86	0.56
433247--433295	12	3.8	12	81	10	53	0	0	14	85	0.59
433246--433307	30	2.0	30	87	9	90	1	1	11	85	0.74
440237--440330	13	8.2	13	69	25	86	39	13	14	31	1.86
440219--440349	33	4.0	33	94	3	203	40	12	14	32	1.84
440251--440351	13	5.8	19	71	28	100	39	11	13	34	1.82
449274--449303	13	2.3	13	100	0	60	36	13	16	33	1.88
449252--449320	33	2.1	32	86	10	95	36	17	14	31	1.90
449349--449401	20	2.7	19	85	5	70	39	16	11	32	1.85
449371--449435	33	2.0	33	88	8	98	41	15	12	30	1.84
451313--451454	65	2.2	65	87	0	212	33	23	7	35	1.83
451231--451545	158	2.0	158	81	3	375	33	22	9	34	1.87
451399--451572	93	1.9	93	86	2	251	31	24	12	32	1.92
453476--453547	20	3.7	19	88	3	81	27	15	16	40	1.89
453495--453548	20	2.8	20	91	2	83	29	12	18	38	1.88
453593--453623	13	2.4	13	94	0	53	35	16	12	35	1.87
453577--453643	33	2.0	32	88	11	100	35	13	17	32	1.89
454413--454442	13	2.3	13	100	0	60	36	13	16	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454488--454560	20	3.7	19	87	7	85	39	17	13	28	1.88
455146--455201	28	2.0	28	96	0	103	41	21	5	32	1.76
456906--456939	10	3.3	10	88	8	50	47	0	20	32	1.51
457024--457049	13	2.0	13	100	0	52	38	15	15	30	1.88
463168--463236	33	2.1	32	84	10	86	39	14	11	34	1.82
463266--463337	20	3.7	19	87	7	83	38	16	15	29	1.89
464902--465031	48	2.7	48	84	8	156	37	11	14	36	1.83
466897--467187	154	1.9	155	81	5	356	39	18	16	25	1.91
467336--467672	138	2.4	140	81	7	407	45	10	9	35	1.71
468770--468809	20	2.0	20	90	0	62	52	0	7	40	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16