genome.fa.s232.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold232
Parameters: 2 7 7 80 10 50 1000
Length:  2516017

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  6  of  16  ( 1878 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
823023--823192	84	2.0	84	87	5	245	47	8	8	35	1.63
823289--823330	3	14.0	3	100	0	84	66	0	0	33	0.92
825991--826038	25	1.9	25	87	8	71	43	0	2	54	1.12
828434--828520	44	2.0	44	93	2	149	28	21	5	43	1.76
831749--831867	52	2.3	52	97	0	220	29	17	18	34	1.94
831749--831887	52	2.7	51	89	4	208	30	17	18	33	1.94
831876--831900	13	1.9	13	100	0	50	36	16	16	32	1.90
831966--831990	13	1.9	13	100	0	50	32	16	16	36	1.90
831944--832010	33	2.0	33	88	0	98	40	13	11	34	1.81
835699--835724	2	13.0	2	100	0	52	0	50	0	50	1.00
853879--853917	18	2.1	19	85	4	53	25	20	2	51	1.60
858060--858121	18	3.6	18	82	8	74	85	4	8	1	0.79
858074--858250	20	8.8	19	70	14	97	79	12	4	3	1.03
858074--858124	1	51.0	1	84	0	57	90	5	1	1	0.60
858073--858121	16	2.9	17	87	6	73	87	6	4	2	0.72
858153--858184	16	2.1	15	94	5	55	84	9	0	6	0.78
859610--859720	49	2.2	52	87	9	160	29	16	18	35	1.93
861029--861074	22	2.0	23	83	4	58	50	4	4	41	1.42
878300--878469	84	2.0	84	87	5	245	47	8	8	35	1.63
878566--878607	3	14.0	3	100	0	84	66	0	0	33	0.92
881268--881315	25	1.9	25	87	8	71	43	0	2	54	1.12
883710--883796	44	2.0	44	93	2	149	28	21	5	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
887024--887142	52	2.3	52	97	0	220	29	17	18	34	1.94
887024--887162	52	2.7	51	89	4	208	30	17	18	33	1.94
887151--887175	13	1.9	13	100	0	50	36	16	16	32	1.90
887241--887265	13	1.9	13	100	0	50	32	16	16	36	1.90
887219--887285	33	2.0	33	88	0	98	40	13	11	34	1.81
891736--891761	3	8.7	3	100	0	52	69	0	0	30	0.89
905105--905243	50	2.8	49	90	3	226	33	13	22	30	1.93
908722--908784	31	2.1	31	85	8	85	53	0	0	46	1.00
908726--908825	41	2.6	36	81	10	92	54	3	0	43	1.16
908953--908997	16	2.7	18	80	16	60	62	2	0	35	1.08
911174--911218	17	2.6	17	92	3	72	53	17	13	15	1.73
916780--916806	2	13.5	2	100	0	54	51	48	0	0	1.00
917634--917661	6	4.7	6	100	0	56	32	17	35	14	1.90
918125--918178	3	17.3	3	84	7	72	70	0	1	27	0.98
920537--920569	16	2.0	17	88	5	50	60	0	0	39	0.97
924802--924929	52	2.5	52	93	3	215	30	17	17	34	1.93
924938--924962	13	1.9	13	100	0	50	36	16	16	32	1.90
925001--925069	20	3.8	19	70	26	69	49	11	10	28	1.72
925003--925102	33	3.0	33	89	0	146	43	12	11	34	1.77
929770--929826	19	2.9	19	84	7	71	28	19	14	38	1.90
929872--929923	20	2.6	20	84	0	59	36	11	21	30	1.89
932099--932140	14	3.1	13	80	19	50	35	0	4	59	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
932097--932150	27	2.0	27	82	7	65	40	0	7	51	1.30
932198--932335	66	2.1	65	84	9	185	53	0	0	44	1.10
932282--932450	38	4.4	38	67	19	120	55	1	0	42	1.14
932248--932643	118	3.4	114	84	10	468	52	2	1	43	1.23
932532--932607	38	2.0	39	87	7	111	46	0	2	51	1.15
932616--932679	22	2.8	22	79	9	74	59	6	1	32	1.32
932618--932679	23	2.7	23	80	12	81	61	6	1	30	1.31
932933--932975	18	2.3	19	88	8	61	65	0	0	34	0.93
932962--933441	124	3.9	126	85	7	607	41	1	2	54	1.24
933170--933214	22	2.0	22	86	0	63	42	0	0	57	0.98
933166--933227	31	2.0	29	82	14	72	40	0	0	59	0.97
933364--933419	22	2.5	22	79	0	67	33	0	1	64	1.04
932986--933457	249	1.9	242	84	8	609	41	1	2	54	1.25
933898--933938	18	2.2	20	86	8	59	12	19	9	58	1.61
935295--936066	385	2.0	385	98	0	1499	32	14	20	32	1.92
937885--937909	13	1.9	13	100	0	50	32	16	16	36	1.90
937959--938014	19	2.9	19	86	2	76	39	12	17	30	1.87
938156--938628	243	1.9	243	93	0	813	36	12	9	40	1.76
947043--947113	19	3.7	19	88	1	106	32	14	22	30	1.93
947811--948455	297	2.2	295	90	5	1011	46	6	8	37	1.62
948629--948724	23	4.3	23	68	15	74	43	0	1	55	1.06
948623--948724	32	3.1	32	78	12	125	43	0	0	55	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
948695--948771	31	2.7	27	74	18	84	44	1	0	54	1.08
948629--948751	67	1.9	66	91	6	207	45	0	0	53	1.06
949011--949053	21	2.0	21	86	8	61	48	0	9	41	1.35
950071--950116	18	2.6	18	82	0	56	56	8	13	21	1.63
951925--952691	334	2.3	332	84	3	990	29	8	9	51	1.64
951925--952747	167	4.9	164	80	6	818	30	9	8	51	1.65
954172--954699	167	3.2	165	85	4	669	37	11	11	39	1.78
956861--956897	3	12.3	3	94	0	65	35	0	35	29	1.58
957072--957118	24	1.9	25	91	4	78	53	19	21	6	1.67
963308--963354	24	2.0	23	83	4	58	34	2	23	40	1.67
963360--963394	17	2.1	17	94	0	61	34	0	17	48	1.47
965035--965685	156	4.2	155	79	5	613	24	19	19	37	1.94
965035--965576	154	3.5	152	81	7	535	24	19	18	37	1.94
965641--965666	13	2.0	13	100	0	52	23	15	7	53	1.67
967549--967598	21	2.4	21	80	9	59	8	18	0	74	1.06
969919--969943	10	2.5	10	100	0	50	80	0	0	20	0.72
970686--970729	21	2.0	22	83	12	56	25	11	13	50	1.75
971575--971625	17	2.8	18	82	5	59	78	0	5	15	0.93
973011--973052	12	3.5	12	83	0	57	85	2	11	0	0.68
975576--975628	24	2.3	23	78	12	56	49	18	9	22	1.76
975672--975728	25	2.3	25	87	0	78	21	10	17	50	1.75
975965--976025	32	1.9	32	93	0	104	44	11	13	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
980579--980761	78	2.4	75	82	9	203	28	27	10	33	1.90
982820--982984	20	8.6	20	67	25	90	30	15	12	41	1.84
982853--982969	33	3.5	33	90	0	180	30	14	11	42	1.82
982919--982944	13	2.0	13	100	0	52	38	15	15	30	1.88
983014--983070	19	2.9	18	82	12	60	35	14	17	33	1.90
983036--983100	32	2.0	33	87	3	96	40	15	16	27	1.89
985529--985557	13	2.2	13	100	0	58	41	17	13	27	1.87
991735--991765	13	2.4	13	94	0	53	35	12	16	35	1.87
991715--991781	33	2.0	33	88	5	100	32	16	14	35	1.90
991832--991858	13	2.1	13	100	0	54	40	14	14	29	1.86
992929--992959	16	1.9	16	100	0	62	51	29	6	12	1.65
994203--994249	10	4.6	10	80	12	51	23	2	0	74	0.93
994762--995765	42	23.9	42	83	2	1012	38	17	29	14	1.89
1008378--1008430	15	3.6	14	85	12	70	18	0	1	79	0.83
1011202--1011251	24	2.0	25	88	3	75	30	22	14	34	1.93
1012690--1012930	126	1.9	127	96	0	448	28	16	12	42	1.84
1014230--1014319	20	4.6	19	83	5	99	31	18	13	36	1.90
1014230--1014320	39	2.3	40	83	9	107	30	18	14	36	1.91
1015961--1015995	3	11.7	3	87	0	52	40	0	31	28	1.57
1019104--1019134	16	1.9	16	93	0	53	54	0	9	35	1.33
1023051--1023104	20	2.8	19	80	5	63	27	14	14	42	1.85
1027730--1027789	30	2.0	31	84	15	81	31	31	3	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1032248--1032320	27	2.6	28	72	12	78	30	31	15	23	1.95
1032395--1032496	29	3.6	28	78	12	100	27	27	13	31	1.94
1032690--1032780	36	2.4	38	89	3	132	31	26	23	18	1.97
1038033--1038130	31	3.2	31	79	13	103	26	21	22	29	1.99
1038127--1038194	27	2.5	28	75	15	70	27	29	17	25	1.97
1038274--1038380	29	3.8	28	78	9	101	28	28	14	27	1.96
1038493--1038660	37	4.5	37	77	5	176	31	27	22	19	1.97
1038490--1038664	75	2.3	75	85	1	217	31	27	21	19	1.97
1041527--1041578	27	2.0	27	84	3	70	26	19	32	21	1.97
1043842--1044039	51	3.7	51	71	12	191	46	11	15	26	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16