genome.fa.s232.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold232
Parameters: 2 7 7 80 10 50 1000
Length:  2516017

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  4  of  16  ( 1878 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470432--470692	47	5.6	47	78	4	240	42	17	19	20	1.90
470439--470692	94	2.7	94	80	2	269	41	17	19	20	1.90
470415--470693	141	2.0	140	81	5	330	41	17	18	21	1.90
470663--470774	35	3.2	35	83	0	125	44	13	17	24	1.85
470683--470794	35	3.2	35	81	5	127	41	11	20	25	1.86
472064--472141	18	4.2	18	74	11	77	5	16	2	75	1.09
477815--478185	155	2.4	153	80	3	429	40	20	15	23	1.90
478381--478643	138	1.9	139	84	5	354	45	8	9	36	1.69
478314--478671	139	2.6	138	78	8	393	45	9	12	32	1.74
479718--479762	20	2.2	20	84	11	56	8	15	6	68	1.36
480520--480582	33	1.9	33	90	6	101	36	14	15	33	1.88
484647--484676	15	1.9	16	93	6	53	53	16	20	10	1.71
486757--486783	13	2.1	13	100	0	54	29	14	14	40	1.86
489114--489170	20	2.9	20	84	10	73	29	17	15	36	1.91
498188--498263	21	3.7	20	83	3	80	35	17	10	36	1.84
498659--498709	18	2.8	17	80	11	57	60	1	1	35	1.19
498717--498766	24	2.1	24	85	7	66	54	6	8	32	1.54
498899--498935	18	2.2	18	85	9	51	0	35	0	64	0.94
499091--499120	16	1.9	15	93	6	51	30	0	0	70	0.88
499145--499274	63	2.0	64	81	7	149	27	2	3	66	1.21
500339--500392	26	2.0	29	85	10	78	46	0	1	51	1.11
501446--501535	19	4.7	19	86	4	101	41	14	16	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503033--503065	15	2.2	15	94	0	57	30	6	30	33	1.82
509837--509883	23	2.0	23	100	0	94	40	21	4	34	1.73
510403--510451	18	2.6	18	87	6	62	40	14	16	28	1.87
510399--510451	20	2.8	20	82	5	74	39	15	16	28	1.89
523653--523696	20	2.2	20	84	8	54	45	6	18	29	1.75
523781--523890	52	2.2	52	86	3	152	32	13	10	42	1.79
525702--525755	20	2.7	20	85	0	63	35	12	12	38	1.82
525621--525787	71	2.4	71	91	2	264	29	16	12	41	1.85
531689--531723	15	2.3	15	95	0	61	20	22	11	45	1.82
531971--532000	15	1.9	16	93	6	53	63	6	0	30	1.20
532715--532742	2	14.0	2	100	0	56	50	0	0	50	1.00
532968--533160	96	2.0	96	85	2	262	38	22	14	23	1.91
533661--533723	28	2.2	28	97	2	117	34	14	3	47	1.60
534496--534529	17	2.0	17	100	0	68	47	5	5	41	1.52
534499--534536	17	2.2	17	90	0	58	50	5	5	39	1.48
538288--538467	61	3.0	61	80	4	161	38	21	15	25	1.91
542633--542683	25	2.0	27	84	7	70	52	7	1	37	1.42
546559--546617	29	2.0	29	96	0	109	61	3	11	23	1.46
549503--549542	21	1.9	21	89	0	62	22	5	5	67	1.30
550902--550951	20	2.6	20	84	6	59	60	0	2	38	1.09
550745--551938	436	2.7	438	78	11	1185	43	5	7	43	1.55
551973--552028	21	2.7	21	77	0	67	57	10	1	30	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
553838--553891	29	1.9	27	85	14	74	64	0	0	35	0.94
553868--553995	11	11.5	11	66	22	63	57	0	1	40	1.14
553846--553906	29	2.1	29	82	11	72	63	1	1	32	1.13
553942--553992	20	2.5	21	81	12	61	58	0	0	41	0.98
555762--555806	21	2.2	21	80	7	58	48	8	0	42	1.34
556059--556091	13	2.4	14	90	5	50	3	12	0	84	0.72
556244--556287	23	2.0	23	86	13	65	45	6	0	47	1.29
556398--556429	16	2.1	15	94	5	55	12	0	9	78	0.97
559831--559876	24	2.0	22	83	8	56	50	2	0	47	1.13
563733--563805	21	3.5	21	78	12	69	41	8	19	31	1.81
563733--563787	20	2.6	20	83	11	58	43	9	18	29	1.80
563844--564031	52	3.7	52	83	4	206	29	14	13	42	1.84
564078--564159	40	2.0	40	100	0	164	24	21	21	31	1.98
567489--567539	23	2.2	24	82	3	59	50	0	1	47	1.12
567962--568006	11	4.3	11	81	16	51	68	0	0	31	0.89
567932--567999	36	1.9	35	81	3	82	61	0	2	35	1.11
567962--568000	21	1.9	21	89	5	62	69	0	0	30	0.89
569477--569523	25	1.9	24	91	4	76	55	2	0	42	1.12
569622--569655	15	2.3	15	90	5	52	44	5	0	50	1.26
571406--571432	2	13.5	2	100	0	54	51	0	0	48	1.00
571812--571844	10	3.4	10	83	8	50	0	12	0	87	0.53
571815--571846	15	2.1	16	94	5	57	0	15	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
572551--572576	3	8.7	3	100	0	52	30	0	0	69	0.89
572660--572740	35	2.3	34	82	14	101	54	4	1	39	1.30
574951--575008	29	2.0	29	93	0	98	39	15	12	32	1.84
578791--578838	3	16.0	3	91	0	78	29	4	0	66	1.10
580621--580658	3	12.7	3	88	0	58	63	0	5	31	1.17
583236--583296	3	20.3	3	86	0	86	63	1	4	29	1.24
583292--583373	27	3.1	26	76	13	78	53	0	1	45	1.08
583654--583708	20	2.7	21	83	11	78	29	0	9	61	1.26
584027--584058	14	2.3	14	100	0	64	71	0	0	28	0.86
583984--584210	113	2.0	113	96	0	418	49	5	8	36	1.56
584659--584701	2	21.5	2	100	0	86	48	0	0	51	1.00
584770--584842	28	2.7	26	73	22	71	61	4	0	34	1.15
585028--585066	18	2.1	19	85	4	53	43	2	0	53	1.14
585484--585509	13	2.0	13	100	0	52	30	0	0	69	0.89
585487--585537	22	2.3	21	81	15	59	31	0	1	66	1.03
585475--585543	29	2.4	28	76	11	68	34	0	2	62	1.10
586483--586517	14	2.5	14	85	0	52	34	0	0	65	0.93
586777--586873	36	2.6	37	86	3	133	44	14	7	34	1.73
592191--592255	32	2.0	32	84	3	85	33	13	10	41	1.80
594539--594593	20	2.7	21	83	8	69	34	14	18	32	1.91
595165--595190	13	2.0	13	100	0	52	38	15	15	30	1.88
595147--595210	32	2.0	33	90	3	103	42	15	14	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
597400--597455	21	2.6	22	75	13	64	55	7	14	23	1.63
601342--601380	13	3.0	13	96	0	69	30	17	15	35	1.91
605668--605700	10	3.4	10	83	8	50	0	12	0	87	0.53
605668--605722	19	2.9	19	78	7	60	0	20	0	80	0.72
606499--606579	35	2.3	35	83	12	103	53	4	1	40	1.31
608779--608836	29	2.0	29	93	0	98	39	15	12	32	1.84
612614--612661	3	16.0	3	91	0	78	29	4	0	66	1.10
617004--617064	3	20.3	3	86	0	86	63	1	4	29	1.24
617067--617117	24	2.1	24	89	7	77	52	0	1	45	1.12
617056--617124	25	2.8	25	77	14	81	55	0	2	42	1.15
617419--617469	20	2.5	20	82	17	70	29	0	7	62	1.23
617790--617819	14	2.1	14	100	0	60	73	0	0	26	0.84
617747--617972	112	2.0	115	93	2	395	49	6	8	35	1.59
618421--618463	2	21.5	2	100	0	86	48	0	0	51	1.00
618533--618605	28	2.7	26	73	22	71	61	4	0	34	1.15
618792--618829	17	2.1	19	85	9	53	42	2	0	55	1.14
619245--619270	13	2.0	13	100	0	52	30	0	0	69	0.89
619248--619298	22	2.3	21	81	15	59	31	0	1	66	1.03
619236--619304	29	2.4	28	76	11	68	34	0	2	62	1.10
620244--620278	14	2.5	14	85	0	52	34	0	0	65	0.93
620537--620633	36	2.6	37	86	3	133	44	14	7	34	1.73
625940--626004	32	2.0	32	84	3	85	33	13	10	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
628288--628342	20	2.7	21	83	8	69	34	14	18	32	1.91
628914--628939	13	2.0	13	100	0	52	38	15	15	30	1.88
628896--628959	32	2.0	33	90	3	103	42	15	14	28	1.86
631150--631205	21	2.6	22	75	13	64	55	7	14	23	1.63
635090--635128	13	3.0	13	96	0	69	30	17	15	35	1.91
635251--635293	20	2.2	19	84	16	52	30	20	4	44	1.72
637666--637718	19	2.7	20	85	8	72	43	15	13	28	1.84
644134--644516	151	2.5	151	77	7	341	34	7	7	50	1.59
645928--646355	166	2.6	166	82	4	517	32	11	13	42	1.80
652077--652159	19	4.7	19	82	17	124	34	18	12	34	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16