genome.fa.s232.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold232
Parameters: 2 7 7 80 10 50 1000
Length:  2516017

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  7  of  16  ( 1878 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1043882--1043919	20	1.9	20	88	0	58	42	13	15	28	1.85
1043934--1043974	20	2.0	20	100	0	82	51	14	9	24	1.72
1050333--1050443	31	3.4	31	75	12	123	31	24	13	30	1.93
1054053--1054110	21	2.8	21	75	15	57	20	27	0	51	1.47
1055695--1055805	32	3.4	32	77	15	127	30	23	13	32	1.93
1055683--1055807	31	3.9	32	74	15	123	29	24	12	32	1.93
1062625--1065265	159	16.8	159	69	10	813	31	16	13	38	1.87
1062625--1063752	319	3.6	316	79	4	1024	32	17	13	37	1.88
1063892--1064523	158	4.0	152	72	13	404	31	15	13	39	1.86
1066318--1066355	11	3.5	11	85	7	51	47	2	2	47	1.30
1067711--1067846	62	2.2	62	97	1	256	23	18	26	31	1.97
1068409--1068445	17	2.2	17	95	0	65	43	0	13	43	1.44
1077009--1077129	56	2.1	56	90	6	190	38	13	16	31	1.87
1079343--1079398	22	2.5	23	85	2	78	32	17	7	42	1.77
1083658--1084216	28	19.3	28	80	9	529	23	16	30	29	1.96
1085465--1085510	9	5.4	8	82	12	56	0	4	10	84	0.75
1085475--1085510	17	2.2	17	90	5	56	0	2	11	86	0.68
1086467--1086518	21	2.5	21	81	6	61	1	0	15	82	0.75
1086467--1086517	9	5.3	9	78	19	50	1	0	13	84	0.71
1086477--1086517	17	2.4	17	88	8	57	2	0	12	85	0.70
1099637--1099675	10	3.9	10	82	0	51	23	28	7	41	1.82
1100146--1100205	31	2.0	31	83	9	79	30	13	25	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1107936--1107979	22	2.0	22	86	0	61	63	2	15	18	1.41
1107943--1107984	22	1.9	22	90	0	66	61	0	16	21	1.34
1107958--1107995	17	2.2	18	86	9	53	65	2	15	15	1.38
1107958--1108003	15	2.9	17	75	15	53	60	2	19	17	1.46
1108660--1110834	775	2.8	771	88	3	3058	36	14	18	30	1.91
1110830--1123540	158	82.3	156	67	16	3252	36	13	18	31	1.90
1110344--1111320	486	2.0	486	98	0	1909	35	14	18	31	1.91
1110830--1124274	772	17.4	772	97	0	24977	36	13	18	31	1.90
1124622--1124688	33	2.0	33	88	0	98	34	11	13	40	1.81
1124642--1124666	13	1.9	13	100	0	50	36	16	16	32	1.90
1124729--1124753	13	1.9	13	100	0	50	32	16	16	36	1.90
1124762--1124885	52	2.4	52	91	4	198	35	18	16	29	1.93
1129103--1129209	50	2.1	50	96	0	196	42	14	20	22	1.87
1134636--1134679	15	3.1	14	80	12	54	43	18	6	31	1.76
1137571--1137711	29	4.9	29	71	9	99	34	24	4	36	1.75
1137616--1137728	29	3.9	29	77	2	102	37	24	3	34	1.73
1144270--1144559	80	3.6	81	82	5	284	33	11	25	29	1.91
1144434--1144666	109	2.1	108	84	2	288	33	12	24	28	1.92
1144574--1144749	81	2.2	81	81	0	199	32	10	24	31	1.90
1147773--1148450	65	10.6	65	74	11	413	37	16	20	25	1.93
1147707--1148158	188	2.4	188	80	7	448	36	16	21	24	1.94
1148059--1148191	60	2.2	61	89	5	207	38	13	21	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1148270--1148449	66	2.8	65	83	5	211	39	15	20	25	1.91
1148951--1150062	65	17.3	62	75	10	484	35	16	21	26	1.94
1149248--1150070	191	4.3	183	76	11	564	35	16	21	26	1.94
1149050--1150062	322	3.2	316	77	9	914	35	16	21	26	1.94
1150208--1150295	44	2.0	44	81	0	104	39	14	26	19	1.90
1150258--1150325	32	2.2	31	81	7	75	27	16	27	27	1.97
1150290--1150360	36	2.0	36	83	5	92	36	12	25	25	1.91
1150326--1150439	29	4.0	29	75	10	108	33	13	26	27	1.93
1150376--1150435	27	2.1	28	84	6	77	31	10	30	28	1.89
1157846--1158977	155	7.4	152	75	10	727	38	19	16	25	1.92
1160754--1161103	164	2.2	158	79	9	359	49	8	10	31	1.67
1160885--1161253	163	2.3	163	80	6	405	49	8	11	30	1.69
1162528--1165232	472	5.7	473	84	3	3258	37	13	18	31	1.89
1163425--1164080	158	4.2	155	68	15	382	38	13	17	31	1.88
1163425--1164550	157	7.2	155	68	13	384	37	13	17	30	1.89
1165261--1166660	159	8.8	156	68	11	589	38	13	17	30	1.89
1165646--1166307	318	2.1	316	84	2	853	37	14	17	29	1.90
1166457--1166907	250	1.8	248	91	0	749	36	11	19	32	1.88
1165931--1167367	724	2.0	724	92	0	2403	36	13	18	31	1.90
1166662--1168209	483	3.2	474	84	3	1964	36	13	18	31	1.90
1167863--1168477	317	1.9	318	86	1	865	36	14	17	31	1.90
1168697--1169393	354	2.0	355	86	3	976	36	13	19	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1169052--1170111	475	2.2	473	85	4	1425	37	13	17	30	1.89
1170857--1170908	19	2.7	19	84	3	68	38	13	13	34	1.84
1170893--1170919	13	2.1	13	100	0	54	40	14	14	29	1.86
1170874--1170938	32	2.0	32	87	3	94	41	12	15	30	1.84
1171227--1172750	468	3.2	466	83	5	1826	36	13	18	31	1.89
1172756--1172804	19	2.6	19	93	0	89	44	18	10	26	1.81
1176313--1176362	5	10.4	5	76	23	54	80	0	4	16	0.87
1176814--1176881	36	1.9	36	87	3	102	57	10	25	7	1.57
1176943--1177172	122	1.9	123	82	2	293	30	32	16	20	1.95
1179482--1179600	42	2.8	42	84	0	157	10	42	0	45	1.45
1181346--1181393	20	2.4	19	80	19	53	29	12	6	52	1.63
1183754--1183794	20	2.0	20	85	9	55	53	17	0	29	1.44
1186627--1186669	21	2.1	20	82	4	50	53	6	13	25	1.65
1193129--1193182	20	2.7	20	88	5	74	37	16	14	31	1.89
1193590--1194815	477	2.6	474	85	3	1524	36	12	18	32	1.88
1194818--1198788	476	8.3	471	83	4	4671	36	13	18	30	1.90
1196125--1198689	159	16.2	157	66	13	813	36	13	18	30	1.90
1198914--1198956	20	2.1	21	95	4	79	32	23	11	32	1.90
1201243--1201488	102	2.4	104	86	2	345	29	25	12	32	1.92
1201243--1201480	51	4.6	51	83	3	282	29	26	12	31	1.92
1201244--1201527	102	2.8	100	82	4	334	30	25	11	33	1.91
1201542--1201660	51	2.3	51	92	0	202	26	27	15	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1201414--1201713	130	2.3	130	83	2	379	29	24	11	34	1.91
1216759--1216819	18	3.3	18	83	4	59	77	14	3	4	1.07
1216784--1216822	13	2.9	13	85	14	53	87	12	0	0	0.55
1216787--1216822	15	2.5	14	91	8	63	86	13	0	0	0.58
1218106--1218628	33	15.8	33	75	14	402	20	32	13	32	1.92
1218101--1218256	30	5.1	29	76	13	134	22	31	15	30	1.95
1218199--1218628	100	4.3	100	80	10	432	20	33	13	33	1.91
1218104--1218628	69	7.9	66	77	12	429	20	32	13	32	1.92
1218232--1218648	169	2.5	168	89	3	622	20	34	12	32	1.91
1218630--1218790	32	5.0	32	90	1	225	29	34	18	18	1.95
1218638--1218790	65	2.4	63	90	5	227	30	33	19	16	1.94
1218795--1219931	43	24.1	43	74	15	766	24	25	18	31	1.97
1218795--1220034	92	13.0	92	86	6	1407	24	25	18	31	1.97
1218981--1220041	135	7.4	145	77	11	936	24	25	18	31	1.97
1219782--1220034	52	4.9	52	94	0	425	22	24	19	34	1.96
1220712--1220760	19	2.5	20	96	3	91	34	12	18	34	1.88
1220782--1220806	13	1.9	13	100	0	50	32	16	16	36	1.90
1220815--1220941	50	2.5	51	88	5	195	34	18	18	28	1.95
1227850--1227898	11	4.2	12	84	10	57	83	8	4	4	0.89
1227869--1227898	10	2.9	10	95	5	51	90	10	0	0	0.47
1227856--1227898	11	3.8	11	87	3	59	86	9	2	2	0.76
1227842--1227898	22	2.5	22	75	13	62	80	12	3	3	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1228138--1228180	20	2.1	21	86	4	61	81	6	11	0	0.87
1228225--1228264	8	4.9	8	87	6	62	90	10	0	0	0.47
1228222--1228266	1	45.0	1	81	0	54	91	8	0	0	0.43
1228220--1228266	11	4.0	11	84	15	67	89	10	0	0	0.49
1228223--1228266	17	2.6	17	89	7	63	90	9	0	0	0.44
1229210--1229811	31	18.9	31	73	16	373	19	34	15	30	1.93
1229310--1229355	23	2.0	23	95	0	83	28	32	21	17	1.96
1229431--1229817	67	6.1	61	75	15	304	19	35	14	30	1.91
1229501--1229850	99	3.5	100	87	5	464	18	36	14	30	1.91
1229336--1229878	131	4.2	131	82	11	666	19	34	14	30	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16