genome.fa.s332.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold332
Parameters: 2 7 7 80 10 50 1000
Length:  2744988

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  11  of  17  ( 1993 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1539092--1539117	13	2.0	13	100	0	52	38	15	15	30	1.88
1541323--1541367	21	2.1	21	84	8	56	53	4	20	22	1.63
1543170--1543201	15	2.1	15	94	0	55	46	15	21	15	1.83
1545421--1545467	21	2.3	21	79	20	55	34	19	4	42	1.70
1545423--1545465	20	2.2	19	84	16	52	32	18	4	44	1.71
1547856--1547881	13	2.0	13	100	0	52	38	15	15	30	1.88
1554462--1554512	17	3.0	17	72	11	50	45	0	5	49	1.26
1557273--1557327	20	2.7	21	86	8	69	40	12	14	32	1.84
1557364--1557501	51	2.7	51	85	2	170	31	15	11	40	1.84
1558178--1558238	30	2.0	30	93	0	104	22	32	1	42	1.64
1564347--1564858	69	7.7	68	72	14	286	25	21	15	37	1.92
1564347--1564858	138	3.8	132	74	13	372	25	21	15	37	1.92
1564484--1564802	62	4.9	63	72	14	218	26	21	15	36	1.93
1564347--1564690	133	2.5	134	78	8	324	25	21	14	38	1.91
1564347--1564861	200	2.6	199	81	6	571	26	21	14	37	1.92
1565714--1565739	13	2.0	13	100	0	52	38	15	15	30	1.88
1572143--1572192	17	3.0	17	77	13	59	44	0	6	50	1.26
1575002--1575136	50	2.7	49	85	4	164	31	16	11	40	1.83
1575804--1575863	30	2.0	29	90	3	93	23	33	1	41	1.64
1583278--1583303	13	2.0	13	100	0	52	38	15	15	30	1.88
1589871--1589921	17	3.0	17	72	11	50	45	0	5	49	1.26
1592682--1592736	20	2.7	21	86	8	69	40	12	14	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1592773--1592910	51	2.7	51	85	2	170	31	15	11	40	1.84
1593587--1593647	30	2.0	30	93	0	104	22	32	1	42	1.64
1599769--1600475	70	10.6	69	70	16	336	26	21	15	37	1.92
1599905--1600412	65	7.8	62	71	14	251	26	20	15	37	1.93
1599769--1600089	132	2.4	135	82	6	377	26	21	15	37	1.93
1599769--1600475	202	3.6	196	78	7	657	26	21	15	37	1.92
1600307--1600428	63	2.0	62	80	4	138	30	22	16	30	1.96
1600977--1601031	20	2.7	21	82	2	67	43	10	12	32	1.78
1603449--1603855	79	5.1	79	78	6	387	29	21	12	37	1.90
1603459--1603855	158	2.5	154	79	8	431	28	20	12	37	1.90
1604954--1605026	20	3.6	20	81	3	101	35	13	19	31	1.91
1604954--1605048	41	2.3	42	96	1	174	40	12	17	29	1.87
1605087--1605112	13	2.0	13	100	0	52	38	15	15	30	1.88
1609165--1609203	15	2.6	15	91	0	60	51	15	20	12	1.76
1611218--1611295	20	3.6	21	73	15	70	25	12	16	44	1.83
1611282--1611320	13	3.0	13	96	0	69	30	17	15	35	1.91
1613126--1613171	16	2.8	16	93	6	74	28	2	39	30	1.69
1613778--1613850	20	3.6	20	81	3	101	35	13	19	31	1.91
1613778--1613872	41	2.3	42	96	1	174	40	12	17	29	1.87
1613911--1613936	13	2.0	13	100	0	52	38	15	15	30	1.88
1634112--1634188	20	3.8	20	81	6	93	41	14	14	29	1.85
1635353--1635400	20	2.3	21	86	13	73	33	25	4	37	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1636153--1636216	32	2.0	33	87	3	94	39	17	14	29	1.88
1638411--1638460	21	2.3	21	80	10	57	56	4	18	22	1.58
1640258--1640288	15	2.1	15	93	0	53	48	16	22	12	1.80
1642366--1642391	13	2.0	13	100	0	52	30	15	15	38	1.88
1642512--1642557	21	2.2	20	81	11	58	32	19	4	43	1.71
1650068--1650097	15	2.0	15	93	0	51	43	6	10	40	1.64
1650602--1650831	34	6.9	34	84	6	258	37	15	13	33	1.86
1651691--1651724	14	2.4	14	90	0	50	29	2	0	67	1.05
1653113--1653165	20	2.7	19	88	11	72	37	13	18	30	1.89
1659417--1659443	13	2.1	13	100	0	54	29	14	14	40	1.86
1659917--1659943	13	2.1	13	100	0	54	29	14	14	40	1.86
1659898--1659962	32	2.0	32	88	8	96	26	15	16	41	1.88
1668099--1668125	13	2.1	13	100	0	54	29	14	14	40	1.86
1668080--1668144	32	2.0	32	90	3	103	26	16	16	40	1.90
1668110--1668166	19	2.9	19	89	5	78	29	17	17	35	1.93
1668268--1668320	20	2.7	20	100	0	106	33	11	15	39	1.83
1673739--1673966	96	2.4	97	79	8	250	30	19	10	39	1.85
1675960--1676012	20	2.7	20	91	2	81	30	13	18	37	1.89
1676044--1676095	20	2.5	21	87	9	72	36	13	17	32	1.89
1682241--1682282	13	3.2	13	93	0	75	28	11	16	42	1.84
1684797--1684851	20	2.8	19	76	17	58	29	16	16	38	1.90
1689786--1689846	19	3.2	19	82	13	72	36	16	13	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1696091--1696130	13	3.1	13	77	0	53	37	12	12	37	1.81
1698418--1698473	21	2.6	21	86	8	69	35	3	14	46	1.62
1698607--1698666	19	3.2	19	86	6	77	35	13	16	35	1.88
1698694--1698747	20	2.7	19	88	11	74	33	14	18	33	1.92
1700249--1700281	17	1.9	17	93	0	57	51	6	3	39	1.42
1701137--1701182	20	2.3	20	85	3	67	36	13	17	32	1.88
1701827--1701875	21	2.3	21	92	0	80	40	24	2	32	1.67
1707971--1708013	3	14.3	3	85	0	59	30	27	0	41	1.56
1711557--1711581	13	1.9	13	100	0	50	36	16	16	32	1.90
1711536--1711601	33	2.0	33	85	5	89	34	16	13	34	1.88
1711648--1711678	13	2.4	13	94	0	53	35	16	9	38	1.81
1711635--1711699	33	2.0	32	88	11	96	35	13	15	35	1.87
1713417--1713443	13	2.1	13	100	0	54	40	14	14	29	1.86
1720475--1720511	3	12.3	3	94	0	65	29	35	0	35	1.58
1722199--1722225	13	2.1	13	100	0	54	40	14	14	29	1.86
1722180--1722244	32	2.0	33	87	3	96	41	15	15	27	1.87
1724953--1725670	66	11.0	66	72	7	330	39	13	23	23	1.91
1725837--1725998	66	2.5	66	79	5	175	37	9	25	27	1.88
1726205--1726309	38	2.8	40	77	8	112	43	15	20	20	1.87
1727214--1727427	30	7.2	30	65	14	97	50	22	11	15	1.76
1727214--1727427	60	3.6	60	89	5	319	50	22	11	15	1.76
1727397--1727450	23	2.3	23	83	3	63	48	22	11	18	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1727337--1727515	83	2.1	83	82	1	214	50	22	10	16	1.75
1727422--1727899	60	8.2	59	73	10	166	49	18	14	17	1.79
1727543--1727731	57	3.3	56	81	10	186	49	16	14	19	1.80
1727578--1727731	29	5.4	28	75	12	116	50	17	14	18	1.79
1727477--1727731	58	4.4	58	78	5	248	50	17	13	18	1.78
1728962--1729010	25	2.0	25	91	0	80	24	0	2	73	0.94
1730290--1730343	19	2.8	20	85	2	74	29	12	18	38	1.88
1730373--1730435	33	1.9	33	90	6	101	34	11	19	34	1.87
1732326--1732398	20	3.7	19	87	3	83	35	17	17	28	1.93
1741058--1741108	19	2.6	20	84	6	68	35	19	15	29	1.93
1741094--1741120	13	2.1	13	100	0	54	40	14	14	29	1.86
1741841--1742228	156	2.5	156	80	4	401	26	13	15	44	1.84
1741841--1742451	155	4.0	156	74	8	439	26	12	16	44	1.84
1747516--1747582	12	5.2	12	75	22	57	20	0	2	76	0.92
1747524--1747555	17	1.9	16	93	6	55	21	0	3	75	0.95
1750133--1750170	20	1.9	20	94	0	67	42	10	7	39	1.69
1750286--1750364	33	2.4	33	89	0	122	43	17	11	27	1.84
1750319--1750343	13	1.9	13	100	0	50	36	16	16	32	1.90
1750949--1751005	19	2.9	19	81	2	69	31	17	17	33	1.93
1751034--1751103	34	2.1	33	89	7	106	32	10	21	35	1.87
1754843--1754892	20	2.5	20	90	0	73	30	14	16	40	1.87
1754946--1755004	13	4.0	13	73	26	55	35	16	13	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1754960--1755024	20	3.6	20	73	26	81	40	18	12	29	1.87
1754947--1755027	33	2.5	33	100	0	162	37	17	13	32	1.89
1760488--1760513	13	2.0	13	100	0	52	30	15	15	38	1.88
1760498--1760554	19	2.9	19	84	5	78	29	15	17	36	1.91
1760494--1760553	20	3.0	20	80	4	77	30	15	18	36	1.91
1760585--1760636	21	2.5	21	90	9	81	36	13	21	28	1.91
1763411--1763497	33	2.7	33	82	10	101	41	2	24	32	1.67
1769476--1769505	14	2.1	15	93	6	53	33	0	0	66	0.92
1770626--1771004	167	2.3	167	79	8	412	37	10	11	39	1.77
1771242--1771712	154	3.1	153	80	3	527	24	18	18	38	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17