genome.fa.s332.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold332
Parameters: 2 7 7 80 10 50 1000
Length:  2744988

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  12  of  17  ( 1993 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1777263--1777337	37	1.9	39	82	12	93	8	14	20	57	1.62
1778226--1778279	20	2.7	20	94	2	90	37	11	18	33	1.86
1778328--1778379	20	2.6	20	87	0	68	38	15	13	32	1.86
1779990--1780014	13	1.9	13	100	0	50	32	16	16	36	1.90
1780063--1780116	19	2.8	20	80	2	56	37	16	16	29	1.91
1788812--1788901	20	4.8	18	81	9	74	35	15	16	32	1.91
1788830--1788881	19	2.7	19	90	3	77	40	15	15	28	1.88
1788830--1788901	20	3.7	20	83	5	85	37	15	16	30	1.90
1793070--1793307	50	4.8	50	90	0	350	30	17	23	28	1.97
1793762--1793813	22	2.4	22	96	0	95	30	19	36	13	1.90
1797691--1797978	50	5.8	50	92	0	477	30	19	21	28	1.97
1799052--1799129	20	3.9	20	80	6	86	42	14	11	32	1.81
1799096--1799232	52	2.7	52	90	1	213	45	8	17	28	1.78
1799196--1799233	20	1.9	20	94	0	67	42	7	18	31	1.79
1802208--1802402	76	2.5	75	79	7	230	27	16	13	42	1.87
1803106--1803217	39	2.8	39	76	8	109	19	21	12	46	1.83
1803107--1803224	40	3.0	40	75	7	114	19	22	13	44	1.85
1804760--1804815	26	2.2	26	83	6	69	33	1	3	60	1.24
1805345--1805412	33	2.1	32	89	8	102	36	16	16	30	1.90
1810586--1810610	13	1.9	13	100	0	50	32	16	16	36	1.90
1810566--1810629	32	2.0	32	96	0	119	34	17	12	35	1.87
1810567--1810630	19	3.7	19	76	23	77	35	17	12	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1810784--1811382	28	20.5	28	81	7	488	21	16	30	31	1.95
1810784--1811084	114	2.7	114	95	1	534	17	17	29	34	1.93
1811100--1811174	35	2.2	35	80	7	91	32	10	33	24	1.89
1811188--1811383	30	6.8	27	78	8	151	20	17	31	30	1.96
1811188--1811387	57	3.5	57	81	8	219	21	17	31	30	1.96
1813049--1813157	21	5.1	21	68	24	75	29	16	24	29	1.97
1813049--1813170	43	2.8	43	92	0	199	28	17	25	28	1.97
1813241--1813346	29	3.6	29	78	14	128	18	14	28	38	1.90
1813234--1813933	28	23.9	29	78	10	515	22	16	29	31	1.96
1813234--1813653	114	3.7	113	84	7	505	19	17	29	34	1.94
1813646--1813720	35	2.2	35	87	2	107	33	10	36	20	1.87
1813759--1813929	30	6.0	27	81	11	139	22	16	30	30	1.96
1813734--1813934	57	3.5	57	85	6	253	22	16	30	29	1.96
1815681--1815752	22	3.3	22	67	11	58	29	20	25	25	1.99
1815665--1815773	21	5.1	21	65	20	73	28	18	25	27	1.98
1815665--1815784	43	2.8	43	94	0	204	28	17	25	28	1.98
1815889--1816515	28	21.5	28	81	8	571	21	16	30	32	1.95
1815858--1816515	86	7.5	85	78	11	571	21	16	30	32	1.95
1815889--1816520	114	5.4	115	80	8	636	21	16	30	31	1.95
1816233--1816307	35	2.2	34	85	7	98	30	8	36	25	1.85
1816321--1816516	30	6.8	27	80	7	167	20	17	31	30	1.95
1816321--1816523	57	3.5	57	83	5	246	22	16	31	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1818267--1818338	22	3.3	22	67	11	58	29	20	25	25	1.99
1818251--1818359	21	5.1	21	65	20	73	28	18	25	27	1.98
1818251--1818372	43	2.8	43	94	0	208	27	17	27	27	1.97
1818475--1819101	28	21.5	28	80	8	544	21	16	29	32	1.95
1818475--1819101	114	5.4	113	80	8	557	21	16	29	32	1.95
1818819--1818893	35	2.2	34	88	7	107	30	9	36	24	1.87
1818907--1819102	30	6.8	27	78	7	149	21	16	31	30	1.96
1818870--1819109	57	4.1	57	80	5	230	25	15	31	27	1.96
1826855--1826879	13	1.9	13	100	0	50	40	16	8	36	1.77
1826968--1826993	13	2.0	13	100	0	52	30	15	15	38	1.88
1826948--1827015	33	2.1	32	89	8	102	35	14	16	33	1.89
1827755--1827794	15	2.7	15	88	7	55	20	2	0	77	0.88
1827767--1827794	5	5.6	5	100	0	56	17	0	0	82	0.68
1829988--1830038	20	2.6	20	87	3	68	39	19	13	27	1.90
1831625--1831654	9	3.3	9	95	0	51	40	0	33	26	1.57
1836204--1836242	13	3.0	13	88	0	60	30	15	15	38	1.88
1836627--1836691	21	3.6	19	73	26	70	44	15	12	27	1.82
1836645--1836670	13	2.0	13	100	0	52	38	15	15	30	1.88
1836627--1836691	34	2.0	33	93	6	114	44	15	12	27	1.82
1837562--1837602	22	2.0	20	86	13	57	31	21	4	41	1.74
1839956--1839980	13	1.9	13	100	0	50	32	16	16	36	1.90
1839936--1840003	33	2.1	33	88	2	102	35	17	14	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1846239--1846294	20	2.7	21	83	10	71	28	17	12	41	1.86
1846259--1846312	20	2.6	21	88	2	74	33	16	9	40	1.80
1858753--1858863	31	3.5	31	87	7	163	25	32	18	24	1.97
1858753--1858927	31	5.5	31	84	4	156	23	32	16	28	1.96
1858871--1859324	62	7.0	62	86	7	486	20	32	13	32	1.92
1859029--1859080	27	1.9	27	92	0	86	23	36	19	21	1.95
1859059--1859357	37	8.7	35	79	12	334	20	32	13	34	1.91
1858835--1859357	34	16.0	33	76	17	463	20	32	13	33	1.91
1859234--1859286	27	2.0	26	85	3	70	24	33	16	24	1.96
1859362--1859431	33	2.1	35	89	5	108	25	35	18	20	1.95
1859431--1859993	49	11.8	49	80	11	634	25	25	17	31	1.97
1859572--1859931	92	3.9	92	89	5	489	25	25	18	30	1.98
1860796--1860862	33	2.0	33	88	0	98	34	11	13	40	1.81
1860816--1860840	13	1.9	13	100	0	50	36	16	16	32	1.90
1860939--1861059	52	2.3	52	94	0	206	35	17	18	28	1.93
1865751--1865776	13	2.0	13	100	0	52	38	15	15	30	1.88
1868426--1868477	26	2.0	26	92	0	86	11	19	34	34	1.88
1868582--1868684	34	3.0	34	87	2	145	11	28	20	39	1.87
1877609--1877665	21	2.8	20	84	10	71	49	10	12	28	1.73
1877693--1877748	20	2.7	21	81	13	71	32	19	8	39	1.83
1877693--1877766	21	3.6	20	81	9	69	32	18	9	39	1.83
1877716--1877766	20	2.5	20	87	3	66	31	17	9	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1879553--1879844	29	9.7	29	75	11	207	27	30	16	25	1.96
1879553--1879707	57	2.7	57	83	5	186	30	30	16	21	1.96
1879553--1879717	86	1.9	85	88	1	249	29	31	17	21	1.96
1879702--1879794	35	2.7	34	83	3	116	19	33	12	34	1.90
1879702--1879793	34	2.7	35	81	5	98	19	32	13	34	1.90
1879767--1879864	28	3.4	28	90	2	142	35	29	17	17	1.93
1879767--1879903	28	4.7	29	83	12	115	34	28	18	18	1.95
1879980--1880088	21	5.1	21	66	16	80	27	23	18	30	1.98
1879970--1880088	43	2.8	43	94	2	204	26	23	19	30	1.98
1879970--1880081	22	5.2	21	65	16	59	26	22	19	31	1.98
1880970--1881036	19	3.9	17	75	25	70	35	11	17	34	1.87
1880971--1881033	32	2.0	32	93	0	108	34	12	19	33	1.89
1894491--1894590	31	3.2	30	81	13	114	84	14	1	1	0.74
1894491--1894581	40	2.2	41	86	5	132	84	13	1	1	0.73
1894493--1894584	6	15.3	6	78	16	84	83	14	1	1	0.76
1894491--1894578	1	88.0	1	72	0	59	85	12	1	1	0.72
1896014--1896128	29	4.0	27	73	12	79	29	33	17	20	1.95
1896142--1896213	35	2.1	35	86	2	101	20	36	9	33	1.86
1896207--1896358	28	5.3	29	80	8	134	34	30	17	17	1.93
1896232--1896332	28	3.6	28	91	0	166	36	30	16	15	1.91
1896232--1896358	28	4.5	29	85	6	147	36	30	15	17	1.91
1896448--1896556	21	5.1	21	65	12	78	26	24	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1896469--1896540	22	3.3	22	69	11	76	23	23	22	30	1.99
1896438--1896556	43	2.8	43	98	0	229	26	24	20	29	1.99
1896438--1896549	22	5.2	21	66	12	75	25	23	20	30	1.98
1897435--1897502	19	3.9	18	75	23	74	35	10	16	38	1.82
1897437--1897499	32	2.0	32	93	0	108	34	11	17	36	1.85
1897456--1897480	13	1.9	13	100	0	50	36	16	16	32	1.90
1911432--1911525	9	10.4	9	85	10	122	87	12	0	0	0.55
1911431--1911525	24	3.8	24	82	16	113	86	13	0	0	0.58
1911432--1911513	1	82.0	1	77	0	83	89	10	0	0	0.50
1912957--1913248	29	9.7	29	73	11	171	29	31	15	23	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17