genome.fa.s332.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold332
Parameters: 2 7 7 80 10 50 1000
Length:  2744988

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  5  of  17  ( 1993 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
605411--605883	116	4.1	115	77	8	444	25	11	17	45	1.82
608453--608513	20	3.0	20	76	9	61	36	11	16	36	1.85
609128--609186	25	2.4	25	97	0	109	22	6	37	33	1.80
609263--609477	61	3.5	61	79	5	227	36	13	24	25	1.92
609364--609493	61	2.1	63	82	4	158	43	11	21	23	1.85
609440--609572	53	2.6	51	81	10	164	37	15	22	24	1.93
611435--611501	6	10.8	6	79	17	75	1	2	14	80	0.90
611441--611513	10	7.4	9	72	24	51	2	2	13	80	0.93
615862--615902	21	2.0	20	90	4	64	51	14	12	21	1.75
616804--616856	20	2.7	20	96	0	97	37	13	15	33	1.86
627915--627965	21	2.6	19	82	11	66	45	15	23	15	1.85
627922--627971	21	2.4	21	96	0	91	48	14	24	14	1.80
627922--627980	21	2.9	21	89	2	75	47	11	25	15	1.79
631384--632057	337	2.0	337	99	0	1321	40	13	14	32	1.84
632102--632415	142	2.2	142	85	3	420	43	11	8	36	1.70
633556--633581	13	2.0	13	100	0	52	30	15	15	38	1.88
635192--635216	13	1.9	13	100	0	50	32	16	16	36	1.90
635895--635938	21	2.1	21	83	8	54	27	31	2	38	1.69
637557--637603	21	2.3	20	75	10	51	44	4	17	34	1.68
637724--637762	13	3.0	13	96	0	69	35	15	17	30	1.91
637748--637826	20	3.7	20	78	15	77	44	15	15	25	1.85
639827--639857	15	2.1	15	93	0	53	12	22	16	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
643170--643195	13	2.0	13	100	0	52	30	15	15	38	1.88
644675--644995	165	1.9	166	80	8	377	49	7	11	31	1.67
650065--650307	104	2.3	104	94	0	423	35	15	23	24	1.94
650065--650731	52	12.6	52	74	5	307	34	15	24	25	1.94
650122--650432	156	2.0	157	83	3	394	35	13	25	25	1.93
650169--650665	270	1.8	269	79	3	568	34	15	25	25	1.95
650037--650747	374	1.9	374	80	2	820	36	14	24	24	1.93
650790--651054	33	8.3	31	80	5	208	21	15	31	30	1.95
650806--651047	95	2.5	96	81	6	254	21	16	30	31	1.95
651064--651660	67	9.3	65	75	13	404	37	12	27	21	1.90
651157--651562	27	13.1	28	74	16	192	38	12	27	20	1.90
651064--651659	34	18.6	33	76	11	442	37	12	28	21	1.90
651251--651536	61	4.6	60	78	13	183	38	12	27	20	1.89
651072--651536	126	3.7	126	83	7	484	37	12	28	21	1.89
651310--651699	68	6.0	67	77	12	359	40	12	26	20	1.87
651404--651536	66	2.0	68	88	5	200	42	10	27	19	1.84
651633--651751	30	4.0	30	83	5	145	35	16	25	22	1.95
651077--651719	127	5.1	125	81	6	441	38	13	27	21	1.90
658135--658730	49	12.9	50	70	15	306	29	17	26	25	1.98
658135--658375	101	2.4	101	85	2	315	32	17	26	24	1.97
658337--658666	39	7.7	39	70	18	192	27	18	26	27	1.98
658287--658725	88	5.0	88	91	0	673	28	18	25	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
658599--658678	39	2.1	39	87	0	115	25	21	26	27	1.99
658748--658872	57	2.2	57	84	8	155	17	18	32	32	1.94
658748--658872	29	4.3	29	79	12	141	17	18	32	32	1.94
658853--658969	33	3.8	32	82	13	145	33	14	30	21	1.93
658886--658992	27	3.7	27	83	13	142	29	14	33	22	1.93
658846--658992	60	2.5	60	90	2	215	32	13	32	21	1.92
659029--659367	30	10.9	30	79	6	259	32	15	28	23	1.95
658986--659375	126	3.1	124	77	10	400	32	14	28	24	1.94
658980--659375	31	12.7	31	77	8	306	32	14	28	24	1.94
660688--660773	12	7.4	12	78	20	78	0	3	13	82	0.79
660681--660773	23	4.1	23	80	14	104	0	3	15	81	0.81
660689--660756	32	2.2	30	89	7	109	0	2	13	83	0.75
665578--665706	52	2.5	52	86	5	165	31	13	10	45	1.76
668343--668397	20	2.7	21	77	5	58	29	14	14	41	1.85
668363--668416	20	2.7	20	88	8	74	29	16	12	40	1.86
668600--668808	104	2.0	105	86	2	296	25	24	16	32	1.96
669717--669746	13	2.3	13	94	0	51	40	10	16	33	1.82
669694--669760	33	2.0	33	82	5	82	35	16	13	34	1.88
669791--669843	19	2.7	20	85	2	81	35	16	16	30	1.92
669832--669856	13	1.9	13	100	0	50	32	16	16	36	1.90
670489--670567	35	2.3	34	76	8	81	24	27	3	44	1.71
670867--670918	21	2.5	22	78	12	56	21	19	21	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
672246--672304	21	2.7	23	71	15	61	45	0	23	30	1.53
672402--672440	13	3.0	13	84	0	60	38	12	12	35	1.82
679144--679347	111	1.8	111	85	3	286	38	14	14	32	1.86
679610--679652	15	2.9	16	86	13	65	4	9	0	86	0.71
680242--680274	17	1.9	17	93	0	57	0	18	0	81	0.68
683423--684130	334	2.1	327	83	7	887	29	10	7	52	1.63
683418--684204	165	4.8	164	82	7	798	29	10	8	51	1.65
684544--684898	164	2.2	164	82	3	410	31	11	6	49	1.65
683838--685944	700	3.0	700	92	2	3446	29	12	9	48	1.72
685234--685531	165	1.8	165	86	1	436	28	11	6	53	1.62
685242--685605	165	2.2	165	81	4	414	30	11	7	51	1.64
685811--685850	9	4.7	9	84	12	57	30	0	0	70	0.88
686160--686207	24	2.0	23	88	4	69	70	0	16	12	1.16
686169--686209	12	3.5	12	90	3	66	73	0	12	14	1.11
686728--687054	169	1.9	170	82	3	408	28	12	18	40	1.86
687467--687876	129	3.2	128	85	7	562	34	11	10	43	1.75
687503--687876	128	2.9	125	85	7	518	35	10	10	43	1.74
688964--689928	481	2.0	481	91	2	1562	35	17	15	31	1.92
691187--691258	21	3.5	21	73	7	85	44	12	16	26	1.83
691208--691277	19	3.6	19	75	7	77	38	11	18	31	1.86
691185--691279	40	2.4	40	98	0	181	42	11	16	29	1.84
693802--693847	20	2.3	20	92	0	74	23	10	13	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
693802--693854	20	2.7	20	87	0	61	28	11	11	49	1.73
696284--696443	51	3.2	50	87	3	205	27	24	12	35	1.91
696462--696578	51	2.3	51	89	0	189	32	23	10	34	1.88
696352--696588	130	1.8	130	87	1	359	30	24	9	36	1.87
696566--696637	28	2.6	28	84	4	92	23	31	16	27	1.96
696437--696745	158	2.0	158	83	1	395	30	26	9	33	1.88
696806--696874	28	2.5	28	85	4	95	23	28	17	30	1.97
696725--696952	107	2.1	107	93	1	386	26	25	14	34	1.94
696831--697006	79	2.2	79	82	4	221	26	26	15	32	1.95
703073--704145	122	8.7	121	85	5	1205	25	26	19	29	1.98
703073--704146	62	17.4	61	85	5	1281	25	25	19	29	1.98
704073--704301	105	2.2	105	91	0	368	23	28	17	30	1.97
704232--704402	42	4.0	42	78	9	132	17	23	15	43	1.87
704434--704878	105	4.2	105	92	0	703	23	29	16	30	1.96
704814--705049	89	2.7	88	82	7	275	20	28	13	36	1.91
704814--705057	43	5.6	43	80	9	255	20	29	13	36	1.91
705155--705278	42	2.9	43	75	12	112	19	25	14	40	1.90
705168--705303	42	3.1	44	73	15	113	19	24	13	41	1.88
705273--705338	35	1.9	34	84	9	89	21	22	16	39	1.92
705357--705588	105	2.2	105	91	0	383	22	28	17	31	1.96
705527--705958	43	9.8	44	81	9	431	20	25	12	42	1.87
705527--705967	88	5.0	87	78	9	432	19	24	12	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
705528--705966	131	3.3	130	84	6	553	19	25	12	42	1.86
705989--706090	41	2.5	39	81	10	116	17	28	10	43	1.83
709059--709176	50	2.3	51	81	8	134	28	22	13	34	1.92
709193--709309	51	2.3	51	88	4	182	31	29	8	30	1.87
709003--709337	130	2.6	127	79	8	365	28	25	11	33	1.91
709289--709365	28	2.8	27	86	4	100	23	29	19	27	1.98
709348--709467	51	2.4	51	87	2	170	25	30	15	27	1.96
709189--709473	158	1.8	158	84	4	396	27	27	13	31	1.94
709437--709624	79	2.4	78	79	3	189	27	26	14	31	1.95
715816--716675	62	14.0	61	86	4	984	24	26	18	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17