genome.fa.s332.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold332
Parameters: 2 7 7 80 10 50 1000
Length:  2744988

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  4  of  17  ( 1993 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445878--445923	16	2.8	17	83	6	67	45	0	4	50	1.21
451951--451988	19	2.1	19	85	9	53	28	5	18	47	1.70
453088--453140	20	2.6	21	84	3	72	28	16	15	39	1.89
455151--455191	20	2.0	21	90	4	66	4	26	48	19	1.69
455453--455493	22	2.0	21	86	13	59	41	4	21	31	1.74
455627--455686	13	4.6	13	87	0	84	38	18	11	31	1.87
455625--455686	26	2.4	26	100	0	124	37	17	12	32	1.88
461841--461892	20	2.7	20	88	8	72	32	11	19	36	1.87
461925--461977	20	2.6	21	87	3	81	28	16	13	41	1.86
461966--462016	20	2.5	20	87	0	66	33	15	15	35	1.90
465896--465922	13	2.1	13	100	0	54	29	14	0	55	1.40
466780--468263	504	2.9	504	98	0	2824	33	17	17	31	1.93
469531--469648	19	6.7	19	73	23	116	38	13	17	30	1.89
469572--469661	13	6.0	13	71	26	63	36	14	17	31	1.90
469553--469662	32	3.4	32	98	0	211	37	13	18	30	1.89
474082--474318	79	2.9	79	83	7	298	32	14	25	27	1.95
474240--474359	51	2.4	51	97	0	222	31	15	25	28	1.95
474161--474438	130	2.1	130	92	1	459	32	15	24	27	1.95
474291--474640	79	4.4	79	92	0	592	33	14	24	26	1.95
474035--474517	209	2.3	212	89	3	708	34	14	23	26	1.94
476042--476351	35	8.9	35	94	0	539	20	31	5	42	1.74
476358--476385	6	4.7	6	100	0	56	28	0	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477515--477540	13	2.0	13	100	0	52	38	15	15	30	1.88
477999--478065	37	1.9	35	88	11	102	32	11	25	29	1.92
479585--479745	84	1.9	84	80	9	186	53	3	17	25	1.60
481180--481209	13	2.3	13	100	0	60	30	13	16	40	1.87
482591--482657	33	2.0	33	88	0	98	34	11	13	40	1.81
482611--482635	13	1.9	13	100	0	50	36	16	16	32	1.90
482702--482726	13	1.9	13	100	0	50	32	16	16	36	1.90
482735--482855	52	2.3	52	94	0	206	35	18	17	28	1.93
486751--486776	13	2.0	13	100	0	52	38	15	15	30	1.88
487235--487301	37	1.9	35	88	11	102	32	11	25	29	1.92
487689--487932	55	4.3	56	86	7	323	23	21	28	27	1.99
487957--488101	61	2.4	61	84	3	184	27	20	27	24	1.99
501355--502024	79	8.4	79	91	1	1029	32	14	25	27	1.95
503321--503630	35	8.9	35	96	0	575	20	30	5	43	1.75
506441--506468	13	2.2	13	100	0	56	39	17	14	28	1.89
506518--506544	13	2.1	13	100	0	54	40	14	14	29	1.86
506487--506564	32	2.4	32	91	0	120	37	17	11	33	1.86
508662--508794	38	3.5	37	82	7	160	36	18	15	30	1.92
508649--508801	75	2.0	76	83	6	195	33	18	18	29	1.95
511780--511828	2	24.5	2	100	0	98	51	0	0	48	1.00
515288--515359	31	2.3	31	85	4	92	50	13	18	18	1.79
515658--515695	2	19.0	2	94	0	67	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
516191--516221	2	15.5	2	100	0	62	48	0	0	51	1.00
524261--524321	10	5.6	10	75	17	50	22	1	0	75	0.89
524256--524333	16	4.6	17	77	16	83	25	1	0	73	0.91
524830--524854	9	2.8	9	100	0	50	52	0	0	48	1.00
525166--525223	28	2.1	28	83	6	73	50	0	5	44	1.24
526309--526394	32	3.1	26	70	22	66	54	0	0	45	0.99
526324--526376	17	3.2	17	70	24	51	54	0	0	45	0.99
526994--527025	6	5.3	6	100	0	64	53	15	0	31	1.43
531442--531566	62	2.0	62	96	0	232	33	9	17	39	1.82
533421--533452	2	16.0	2	100	0	64	0	50	0	50	1.00
534779--534811	2	16.5	2	100	0	66	48	0	0	51	1.00
539054--539079	13	2.0	13	100	0	52	38	15	15	30	1.88
541297--541341	21	2.1	21	84	8	56	53	4	20	22	1.63
543145--543175	15	2.1	15	93	0	53	48	16	22	12	1.80
545189--545268	20	3.8	20	75	15	79	27	15	13	43	1.84
545254--545292	13	3.0	13	96	0	69	30	17	15	35	1.91
545413--545459	21	2.3	21	79	20	55	34	19	4	42	1.70
545415--545457	20	2.2	19	84	16	52	32	18	4	44	1.71
547842--547867	13	2.0	13	100	0	52	38	15	15	30	1.88
550098--550139	18	2.3	18	80	12	50	54	2	0	42	1.13
550762--550847	22	3.5	25	70	22	58	44	0	2	53	1.13
552933--553153	68	3.2	69	93	2	376	36	9	23	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
553108--553574	97	4.8	97	87	1	598	34	11	24	30	1.90
554727--554778	25	2.2	23	83	10	61	0	15	23	61	1.33
554914--554985	34	2.1	34	86	0	99	8	29	20	41	1.81
557004--557221	52	4.2	52	79	3	208	36	15	23	24	1.94
557578--557650	20	3.6	20	81	3	101	35	13	19	31	1.91
557596--557671	21	3.7	21	78	3	91	40	11	17	30	1.85
557578--557671	41	2.3	41	96	0	170	38	12	18	30	1.88
557710--557735	13	2.0	13	100	0	52	38	15	15	30	1.88
561378--561402	13	1.9	13	100	0	50	36	16	16	32	1.90
562590--562665	32	2.3	32	84	4	89	42	1	30	26	1.64
562609--562673	32	2.0	32	100	0	130	41	0	21	36	1.53
563294--563366	20	3.6	20	81	3	101	35	13	19	31	1.91
563312--563387	21	3.7	21	78	3	91	40	11	17	30	1.85
563294--563387	41	2.3	41	96	0	170	38	12	18	30	1.88
563426--563451	13	2.0	13	100	0	52	38	15	15	30	1.88
564303--564608	52	5.9	52	80	3	269	32	18	26	22	1.97
564290--564613	104	3.1	102	80	4	301	34	17	25	22	1.96
564565--564790	61	3.7	62	77	1	188	37	12	24	25	1.91
564853--565068	31	7.2	31	84	6	198	21	18	29	30	1.97
564898--566521	28	57.6	28	81	4	1398	21	18	30	29	1.97
567804--567872	22	3.2	22	74	14	63	7	10	10	72	1.28
569908--569941	16	2.1	16	100	0	68	58	0	11	29	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
570968--571123	69	2.3	69	91	0	249	38	10	21	30	1.86
571075--571529	96	4.7	96	84	4	558	34	10	24	30	1.89
573086--573146	20	3.0	20	79	13	72	4	27	19	47	1.70
573089--573153	20	3.2	20	78	12	71	4	26	18	50	1.66
575689--575737	10	5.1	9	80	9	53	79	0	18	2	0.83
575672--575744	16	4.3	15	79	17	65	76	2	19	1	0.98
575684--575744	18	3.5	17	78	14	63	78	1	18	1	0.91
576721--576745	13	1.9	13	100	0	50	36	16	16	32	1.90
576810--576837	13	2.2	13	100	0	56	28	14	17	39	1.89
576843--576967	52	2.4	52	95	0	223	36	18	17	28	1.94
581598--581801	79	2.6	79	81	1	212	28	17	28	24	1.97
581756--581827	28	2.6	28	88	0	99	23	19	34	22	1.96
581677--582093	107	3.9	108	74	12	261	29	14	28	27	1.95
581816--582152	52	6.4	51	71	16	231	30	12	26	30	1.92
581705--582154	212	2.1	212	87	2	645	30	13	27	28	1.94
581968--582040	27	2.6	28	82	8	96	21	21	32	23	1.98
584475--584500	13	2.0	13	100	0	52	38	15	15	30	1.88
584454--584520	33	2.0	33	88	0	98	43	16	14	25	1.86
584540--584607	19	3.9	18	76	23	83	38	14	11	35	1.83
584562--584586	13	1.9	13	100	0	50	32	16	16	36	1.90
584543--584605	32	2.0	32	96	0	117	36	15	12	34	1.86
584663--584740	21	3.7	21	98	0	147	37	20	10	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
585579--585846	81	3.3	81	85	1	340	33	12	27	26	1.93
588045--588183	52	2.7	52	86	1	190	42	12	13	30	1.82
593339--593412	20	3.7	19	83	7	94	40	12	12	35	1.80
594061--595111	28	36.8	28	85	3	1253	24	17	27	30	1.97
594083--595440	28	48.1	27	80	7	920	25	16	28	28	1.97
595074--595497	55	7.7	55	87	3	491	30	14	31	23	1.94
595079--595497	82	5.1	83	86	2	524	30	14	31	23	1.94
604683--604727	14	3.4	14	79	14	51	73	0	26	0	0.84
605411--605853	58	7.7	57	77	7	375	24	11	17	45	1.82
605426--605853	174	2.5	172	77	9	431	25	11	17	45	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17