genome.fa.s332.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold332
Parameters: 2 7 7 80 10 50 1000
Length:  2744988

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  13  of  17  ( 1993 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1912951--1913111	86	1.9	86	85	2	225	30	31	16	21	1.95
1913106--1913180	35	2.2	35	87	2	107	22	36	9	32	1.86
1913106--1913197	34	2.7	35	76	8	91	20	33	11	33	1.89
1913171--1913268	28	3.4	28	87	2	133	37	30	15	16	1.89
1913171--1913299	28	4.4	29	82	6	129	37	30	14	17	1.90
1913385--1913491	21	5.1	20	64	27	60	27	22	19	30	1.98
1913374--1913492	43	2.8	43	97	0	220	26	23	20	30	1.98
1913374--1913485	22	5.2	22	65	20	74	25	22	20	31	1.98
1914372--1914425	19	2.8	19	97	0	99	35	11	16	37	1.84
1919261--1919301	19	2.2	19	95	0	73	34	17	14	34	1.90
1919877--1919921	18	2.5	18	88	0	63	44	0	28	26	1.55
1922271--1922319	20	2.5	20	93	0	80	36	10	26	26	1.88
1922533--1922558	13	2.0	13	100	0	52	46	7	15	30	1.74
1922527--1922572	16	3.0	16	75	21	53	50	6	15	28	1.69
1922745--1923270	155	3.4	152	79	8	478	28	14	17	39	1.89
1922745--1923375	154	4.1	156	76	9	460	28	14	17	38	1.90
1925864--1925907	21	2.2	19	84	12	52	6	15	4	72	1.22
1931201--1931234	6	5.8	6	86	6	52	70	0	2	26	1.01
1931185--1931233	23	2.2	22	82	10	55	71	4	2	22	1.13
1936827--1936864	20	1.9	20	100	0	76	57	10	5	26	1.53
1936826--1936884	20	2.9	19	84	5	64	50	11	8	28	1.68
1938320--1938354	10	3.5	10	96	0	61	25	20	31	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1944198--1944278	40	1.9	42	80	9	94	23	0	22	54	1.45
1944436--1944474	13	3.0	13	96	0	69	30	17	15	35	1.91
1946260--1946346	43	2.0	43	95	0	156	42	2	25	29	1.67
1947055--1947079	13	1.9	13	100	0	50	32	16	16	36	1.90
1947035--1947102	33	2.1	32	91	2	109	35	16	16	32	1.91
1948285--1948339	17	3.1	19	74	12	62	50	1	0	47	1.11
1948902--1949076	95	1.8	95	91	0	287	30	22	17	29	1.96
1952554--1952634	28	2.9	28	70	14	85	41	2	14	40	1.59
1952877--1952926	21	2.3	21	80	10	57	54	6	8	32	1.54
1953000--1953061	22	2.8	22	92	0	97	58	1	6	33	1.34
1953154--1953201	22	2.2	22	88	0	69	60	0	4	35	1.16
1955799--1955844	2	23.0	2	100	0	92	0	50	0	50	1.00
1957840--1957881	2	21.0	2	95	0	75	0	47	0	52	1.00
1957881--1957911	2	15.5	2	100	0	62	48	0	0	51	1.00
1958516--1958577	31	2.0	31	100	0	124	19	16	22	41	1.89
1959859--1959909	23	2.3	23	86	6	79	47	0	5	47	1.26
1959859--1959915	23	2.6	23	83	5	64	49	0	5	45	1.24
1961546--1961586	11	3.9	11	87	9	59	26	0	0	73	0.84
1961546--1961574	7	4.3	7	91	8	51	24	0	0	75	0.80
1962894--1962965	32	2.3	31	83	4	83	34	9	8	47	1.67
1963422--1963482	16	3.9	16	73	16	56	34	0	9	55	1.33
1963422--1963481	31	1.9	31	86	0	84	35	0	10	55	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1963806--1963845	21	1.9	21	89	0	62	35	0	10	55	1.34
1963860--1963916	29	2.0	28	83	13	71	21	10	5	63	1.46
1964060--1964109	21	2.4	21	86	3	75	38	4	6	52	1.45
1964122--1964175	28	1.9	28	96	0	99	9	0	20	70	1.14
1964183--1964216	17	2.1	16	88	5	50	32	0	0	67	0.91
1968920--1968967	25	1.9	25	83	8	62	29	10	2	58	1.43
1968965--1969012	5	9.4	5	82	13	62	33	2	0	64	1.05
1970716--1970819	53	1.9	54	84	1	138	37	5	25	31	1.79
1970772--1970962	80	2.4	80	86	4	262	34	12	25	27	1.91
1973452--1973505	20	2.7	20	88	2	72	37	14	7	40	1.74
1973791--1973829	2	19.5	2	100	0	78	51	0	0	48	1.00
1974812--1975332	155	3.4	154	72	8	394	24	15	18	40	1.90
1975480--1975961	156	3.1	155	76	6	395	23	15	18	42	1.88
1974790--1976410	672	2.4	668	81	6	1895	25	15	18	41	1.89
1976153--1976476	154	2.1	155	82	6	399	25	13	18	41	1.88
1976153--1976530	154	2.5	154	78	7	367	25	14	18	41	1.89
1981526--1981654	52	2.5	52	94	2	224	30	18	16	34	1.93
1981526--1981674	52	2.9	51	89	6	212	31	18	16	33	1.93
1981663--1981687	13	1.9	13	100	0	50	36	16	16	32	1.90
1981750--1981774	13	1.9	13	100	0	50	32	16	16	36	1.90
1981728--1981794	33	2.0	33	85	0	89	40	16	11	31	1.85
1982724--1983093	49	7.7	49	84	8	467	32	18	25	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1982724--1983093	190	1.9	191	91	1	607	32	18	25	24	1.97
1982715--1983098	92	4.1	92	86	5	534	32	17	26	23	1.97
1983135--1983344	27	7.1	27	74	17	168	29	13	35	21	1.91
1983285--1983918	33	18.7	33	79	10	561	33	12	34	19	1.90
1983285--1983921	70	9.4	69	81	10	601	33	12	34	19	1.90
1983279--1983921	237	2.7	237	95	1	1117	33	12	34	19	1.89
1983777--1984045	31	8.3	32	80	11	196	31	14	32	21	1.93
1983898--1984045	62	2.4	63	89	3	228	27	16	32	24	1.96
1983892--1984053	32	5.2	30	84	9	191	29	14	32	22	1.94
1992141--1992269	52	2.5	52	94	0	231	28	19	17	34	1.94
1992141--1992289	52	2.9	51	88	4	219	30	18	17	33	1.94
1992278--1992302	13	1.9	13	100	0	50	36	16	16	32	1.90
1992365--1992389	13	1.9	13	100	0	50	32	16	16	36	1.90
1992343--1992409	33	2.0	33	85	0	89	40	16	11	31	1.85
1994155--1994180	13	2.0	13	100	0	52	30	15	15	38	1.88
1994135--1994198	33	2.0	32	87	9	94	28	14	20	37	1.91
1994241--1994296	21	2.7	21	94	0	103	28	16	14	41	1.87
1994335--1994373	20	2.0	19	95	5	69	30	10	23	35	1.88
1998743--1998859	52	2.2	52	90	3	182	30	17	18	32	1.95
1998848--1998872	13	1.9	13	100	0	50	36	16	16	32	1.90
1998936--1998960	13	1.9	13	100	0	50	32	16	16	36	1.90
1999687--2000221	43	12.1	43	69	16	319	32	17	24	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1999732--1999799	21	3.2	21	63	19	50	29	17	26	26	1.98
1999687--1999921	92	2.6	92	91	4	374	31	18	24	25	1.98
1999933--2000254	43	6.6	52	75	12	224	32	16	24	25	1.96
1999996--2000267	43	5.8	48	78	11	276	30	17	25	26	1.97
1999996--2000272	92	3.0	92	90	2	419	31	16	25	26	1.97
2000260--2000350	32	3.0	31	85	7	134	17	17	34	30	1.93
2000336--2000480	29	4.8	30	81	10	154	28	17	23	31	1.97
2000363--2000476	29	4.0	29	86	2	158	28	17	23	30	1.97
2000370--2000482	57	2.0	57	92	0	190	23	17	26	31	1.97
2001916--2001987	1	72.0	1	74	0	63	0	0	12	87	0.54
2001916--2001987	33	2.2	32	86	13	103	0	0	12	87	0.54
2001917--2001987	26	2.7	26	86	8	99	0	0	12	87	0.55
2001916--2001987	21	3.5	21	84	7	103	0	0	12	87	0.54
2015832--2015960	52	2.5	52	94	0	222	31	17	17	34	1.93
2015832--2015980	52	2.9	52	87	6	214	32	17	17	32	1.93
2015969--2015993	13	1.9	13	100	0	50	36	16	16	32	1.90
2016057--2016081	13	1.9	13	100	0	50	32	16	16	36	1.90
2023328--2023380	20	2.6	21	76	8	56	28	15	16	39	1.89
2023402--2023440	20	2.0	20	95	5	71	30	10	20	38	1.86
2023512--2023553	23	2.0	21	86	13	59	42	14	7	35	1.73
2025583--2025648	32	2.1	32	100	0	132	37	0	18	43	1.50
2025752--2025891	44	3.2	44	69	11	133	21	20	15	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2025703--2026032	88	3.8	88	83	2	353	23	18	13	44	1.86
2026451--2026686	60	3.9	61	79	6	223	18	15	18	47	1.82
2027511--2027793	40	7.2	40	67	10	111	21	23	11	43	1.85
2027353--2027667	80	4.0	78	76	6	258	23	22	10	44	1.83
2027355--2027667	158	2.0	160	82	3	382	23	22	10	44	1.83
2027367--2027732	158	2.3	157	78	6	355	22	21	10	45	1.82
2027896--2027976	40	2.0	40	88	4	119	24	22	11	41	1.86
2027360--2027974	80	7.7	79	70	10	250	22	22	10	44	1.84
2029499--2029545	23	2.0	23	83	4	58	51	2	14	31	1.55
2030090--2030143	19	2.8	20	85	2	74	27	18	18	35	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17