genome.fa.s332.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold332
Parameters: 2 7 7 80 10 50 1000
Length:  2744988

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  17  of  17  ( 1993 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2620917--2621296	158	2.4	158	78	5	408	33	15	24	26	1.95
2621236--2621361	50	2.5	50	81	1	144	39	13	20	26	1.90
2624179--2624251	28	2.6	28	97	0	137	9	15	35	39	1.80
2624279--2624515	41	5.7	40	72	15	183	39	12	24	22	1.89
2624279--2624631	42	8.4	41	74	10	243	39	12	25	22	1.89
2624301--2624635	87	3.9	85	77	9	283	41	12	24	21	1.87
2624606--2625147	61	9.0	61	90	4	714	26	20	27	25	1.99
2624606--2625149	183	3.0	183	87	6	797	26	20	27	25	1.99
2626227--2626287	8	7.5	8	78	14	63	0	11	3	85	0.72
2626241--2626288	1	48.0	1	78	0	51	0	6	4	89	0.58
2626227--2626264	17	2.2	17	90	0	58	0	15	0	84	0.63
2626227--2626274	9	5.4	9	80	9	55	0	12	2	85	0.69
2626227--2626288	21	3.0	20	80	4	70	0	11	3	85	0.71
2628294--2628324	10	3.1	10	95	0	53	19	25	9	45	1.81
2628325--2628398	20	3.6	20	70	13	69	33	12	16	37	1.85
2628316--2628408	42	2.2	42	94	0	159	31	15	15	38	1.88
2628398--2628432	17	2.1	17	88	0	52	22	28	8	40	1.84
2628482--2628506	13	1.9	13	100	0	50	32	16	20	32	1.94
2639870--2640249	79	4.8	79	78	8	233	33	14	24	27	1.94
2640189--2640314	50	2.5	50	81	3	137	39	13	22	24	1.90
2642563--2642696	50	2.7	51	90	5	213	42	14	15	26	1.86
2643318--2643582	83	3.3	82	77	8	276	35	8	22	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2643345--2643612	83	3.3	80	77	8	269	34	9	23	32	1.87
2647835--2647902	20	3.3	20	83	4	73	29	16	11	42	1.83
2649680--2649791	55	2.0	55	84	0	143	26	25	14	33	1.94
2658378--2658436	30	2.1	27	81	9	64	44	3	1	50	1.28
2659895--2659943	20	2.5	20	86	3	73	44	18	12	24	1.84
2660652--2660734	41	2.0	41	95	0	148	39	22	1	36	1.62
2664364--2664801	58	7.6	56	77	11	375	24	10	18	46	1.80
2664403--2664497	29	3.2	29	69	16	79	21	11	16	50	1.76
2664450--2664492	10	4.4	10	80	16	54	18	6	13	60	1.55
2664364--2664801	114	3.8	114	78	8	370	24	10	18	46	1.80
2665770--2665804	13	2.6	13	95	4	61	40	2	5	51	1.40
2668249--2668286	12	3.2	12	81	11	51	28	21	2	47	1.64
2669282--2669329	24	2.0	24	95	0	87	35	0	31	33	1.58
2671107--2671214	52	2.1	52	91	1	173	28	22	11	37	1.88
2672796--2673158	56	6.5	56	83	0	386	38	17	20	23	1.93
2672793--2673158	168	2.2	167	85	1	471	38	16	20	24	1.93
2672793--2673158	112	3.3	112	81	3	432	38	16	20	24	1.93
2673478--2673521	21	2.0	22	91	4	72	79	4	4	11	1.02
2681045--2681160	51	2.3	52	81	11	134	30	22	11	36	1.89
2680986--2681236	129	1.9	129	83	3	326	30	21	11	36	1.89
2681095--2681442	79	4.4	79	81	3	362	27	24	14	34	1.93
2681095--2681442	157	2.2	158	82	2	405	27	24	14	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2689999--2690278	143	1.9	145	81	5	334	36	16	17	28	1.92
2691683--2691830	51	2.9	51	86	0	206	27	14	13	43	1.83
2691744--2691872	52	2.5	51	87	1	168	29	16	11	42	1.83
2695301--2695374	19	3.7	19	87	5	85	36	18	16	28	1.93
2706324--2706349	13	2.0	13	100	0	52	30	15	15	38	1.88
2706388--2706463	21	3.7	21	80	3	100	28	17	11	42	1.84
2706409--2706481	20	3.6	20	81	3	101	31	19	13	35	1.91
2706388--2706481	41	2.3	41	98	0	179	29	18	12	39	1.88
2707087--2707133	17	2.7	17	93	3	76	31	38	2	27	1.69
2708921--2708959	13	3.0	13	96	0	69	35	15	17	30	1.91
2708945--2709023	20	3.7	20	75	18	70	45	15	13	25	1.83
2715115--2715140	13	2.0	13	100	0	52	30	15	15	38	1.88
2715179--2715254	21	3.7	21	80	3	100	28	17	11	42	1.84
2715200--2715272	20	3.6	20	81	3	101	31	19	13	35	1.91
2715179--2715272	41	2.3	41	98	0	179	29	18	12	39	1.88
2721149--2721208	13	5.1	13	73	22	69	28	15	15	41	1.86
2721130--2721208	33	2.4	33	97	0	149	29	13	15	41	1.85
2721130--2721196	20	3.7	20	72	25	76	28	13	14	43	1.84
2721193--2721248	19	2.8	20	89	2	87	30	21	14	33	1.93
2723145--2723236	29	3.2	29	65	17	73	23	5	17	53	1.64
2723160--2723388	115	2.0	116	81	4	275	27	7	13	50	1.69
2723143--2723380	58	4.1	58	80	3	216	26	7	15	50	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2725694--2725749	19	2.9	19	86	2	76	37	16	16	30	1.90
2735077--2735119	19	2.2	20	87	4	61	41	9	13	34	1.77
2736249--2736301	18	2.7	21	80	17	76	20	16	20	41	1.90
2739836--2739865	14	2.1	14	100	0	60	50	6	13	30	1.67
2743944--2743970	13	2.1	13	100	0	54	40	14	14	29	1.86
2744390--2744445	19	2.9	19	86	2	76	35	14	17	32	1.90
2744430--2744456	13	2.1	13	100	0	54	40	14	14	29	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17

The End!