genome.fa.s332.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold332
Parameters: 2 7 7 80 10 50 1000
Length:  2744988

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  3  of  17  ( 1993 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265358--265414	20	2.8	20	84	7	71	28	15	12	43	1.83
265439--265494	19	2.9	19	89	2	85	33	14	21	30	1.93
265479--265505	13	2.1	13	100	0	54	40	14	14	29	1.86
266271--266317	21	2.3	21	85	3	60	40	8	19	31	1.81
271114--271166	20	2.7	20	91	2	81	30	15	18	35	1.92
279773--279845	20	3.7	19	85	7	76	30	15	16	38	1.89
279877--279930	20	2.7	20	91	5	83	31	12	18	37	1.89
282083--282135	19	2.7	20	91	2	90	32	11	16	39	1.85
282211--282339	52	2.5	52	94	0	231	36	18	16	28	1.93
295453--295490	15	2.4	16	82	8	51	65	13	2	18	1.37
295858--296377	79	6.6	79	78	6	495	36	11	22	29	1.90
295879--296436	159	3.6	157	81	5	587	36	11	22	29	1.89
295881--296436	78	7.1	79	75	8	392	36	11	22	29	1.89
295971--296436	79	6.0	77	74	10	279	35	11	23	28	1.90
298755--298849	20	4.7	20	78	7	84	36	10	15	36	1.82
310146--310223	20	3.8	21	74	12	63	39	8	12	38	1.75
311654--312321	155	4.3	153	78	7	607	37	20	17	24	1.94
311654--312322	310	2.2	310	80	4	742	37	20	17	24	1.94
314850--314878	14	2.1	14	100	0	58	0	55	0	44	0.99
316560--316612	20	2.6	21	85	8	74	28	13	16	41	1.86
318672--318714	20	2.1	20	86	4	59	9	30	44	16	1.79
319155--319190	13	2.8	13	95	0	63	36	11	19	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321266--321306	15	2.7	15	84	3	55	17	19	17	46	1.85
325315--325377	33	1.9	33	87	6	92	26	11	17	44	1.82
326634--326855	82	2.7	82	78	6	250	45	15	21	17	1.85
327081--327403	161	2.0	167	84	4	435	42	13	26	17	1.86
327363--327664	84	3.6	83	82	2	309	35	14	29	20	1.92
327499--327623	41	3.0	42	68	9	101	33	14	30	21	1.93
327449--327589	41	3.4	42	73	5	117	36	14	27	21	1.93
327388--328052	168	4.1	167	78	9	641	35	13	29	21	1.92
327722--328015	41	7.0	43	64	11	142	35	14	28	21	1.93
327698--328052	84	4.2	84	88	2	482	36	14	27	21	1.92
327462--328052	234	2.4	234	81	7	587	35	13	29	21	1.92
327404--327979	318	1.8	318	84	0	794	35	13	28	21	1.92
328209--328489	127	2.2	127	80	7	320	34	18	26	19	1.95
328297--328650	127	2.8	126	77	2	323	31	19	29	18	1.96
328133--329132	42	23.7	42	70	4	198	32	19	29	18	1.96
328466--328827	169	2.1	169	80	3	397	30	19	30	19	1.96
328509--328960	127	3.6	127	78	4	401	30	19	30	19	1.96
328548--328865	169	1.9	170	81	3	390	30	19	30	19	1.97
328893--329193	127	2.4	128	82	2	347	32	19	29	17	1.95
329147--329389	42	5.7	42	78	4	211	38	20	25	14	1.91
329147--329389	85	2.9	83	76	3	218	38	20	25	14	1.91
329415--329542	48	2.7	48	92	0	211	46	21	17	15	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329817--330041	90	2.5	89	82	5	258	29	18	25	26	1.98
330522--330685	81	2.0	83	83	2	206	47	12	15	24	1.80
335111--335776	155	4.3	154	80	5	670	37	19	18	24	1.94
337416--337441	13	2.0	13	100	0	52	38	15	15	30	1.88
339649--339693	21	2.1	21	84	8	56	53	4	20	22	1.63
346163--346188	13	2.0	13	100	0	52	38	15	15	30	1.88
347030--347073	20	2.1	22	91	8	74	29	9	20	40	1.83
347127--347152	13	2.0	13	100	0	52	30	15	15	38	1.88
347107--347170	33	2.0	33	90	3	103	26	14	17	42	1.87
349724--349761	13	2.9	13	92	0	58	34	13	18	34	1.89
355845--355888	20	2.1	22	87	8	65	31	9	18	40	1.81
355922--355972	20	2.6	20	90	3	77	25	13	17	43	1.86
359496--359520	11	2.3	11	100	0	50	68	16	0	16	1.22
364140--364179	3	13.3	3	100	0	80	67	0	0	32	0.91
367041--367094	12	4.5	12	75	9	56	3	11	24	61	1.46
368346--368379	13	2.6	13	100	0	68	11	0	5	82	0.83
368345--368391	13	3.5	14	86	13	64	8	0	8	82	0.83
368407--368440	11	3.1	11	91	0	50	32	2	0	64	1.08
368405--368441	3	13.0	3	83	11	51	32	2	0	64	1.07
368401--368439	14	2.9	14	88	3	53	35	2	0	61	1.10
368405--368450	14	3.4	14	88	5	60	28	2	0	69	1.00
368413--368443	11	2.8	11	95	0	53	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371396--371451	27	2.1	27	100	0	112	30	14	14	41	1.85
376740--376799	26	2.3	27	91	2	95	38	3	3	55	1.33
379143--379177	13	2.7	13	90	0	52	68	0	0	31	0.90
381824--381875	3	17.3	3	100	0	104	67	0	0	32	0.91
382175--382218	23	1.9	23	90	0	70	63	2	0	34	1.07
382173--382234	23	2.6	24	76	21	60	62	3	0	33	1.11
382174--382228	23	2.4	23	81	6	67	65	1	0	32	1.03
382202--382231	16	1.9	16	93	6	53	66	0	0	33	0.92
382358--382445	24	3.6	23	82	13	104	57	0	1	40	1.06
385119--385152	17	2.0	17	88	11	52	29	0	0	70	0.87
386512--386536	2	12.5	2	100	0	50	48	0	52	0	1.00
386648--386770	64	1.9	64	98	0	237	32	19	21	26	1.97
388389--388548	50	3.2	49	88	3	221	34	19	17	28	1.95
394415--394468	22	2.5	22	96	3	101	61	9	11	18	1.55
395382--395456	20	3.8	20	80	3	80	40	10	13	36	1.79
395379--395456	40	2.0	39	87	2	111	39	11	12	35	1.80
396455--396664	50	4.2	50	86	1	278	33	18	18	29	1.95
399551--399859	50	6.2	50	93	3	516	30	19	21	28	1.98
399551--399859	150	2.1	150	97	1	584	30	19	21	28	1.98
403154--403182	14	2.0	15	93	6	51	55	0	0	44	0.99
404849--405001	76	2.0	76	94	0	270	35	9	14	39	1.79
408243--408363	52	2.3	52	97	0	224	28	18	18	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408243--408383	52	2.7	51	90	4	212	30	17	18	33	1.94
408372--408396	13	1.9	13	100	0	50	36	16	16	32	1.90
408437--408506	33	2.1	33	86	0	95	40	12	11	35	1.80
408462--408486	13	1.9	13	100	0	50	32	16	16	36	1.90
409361--409513	76	2.0	76	94	0	270	35	9	14	39	1.79
409577--409630	25	2.2	25	93	3	92	12	0	12	74	1.08
409576--409633	24	2.4	24	88	8	91	15	0	12	72	1.12
410395--410420	13	2.0	13	100	0	52	30	15	15	38	1.88
412484--412530	21	2.2	21	100	0	94	17	38	19	25	1.92
414431--415348	31	29.9	30	79	5	853	24	27	15	32	1.95
414435--415354	61	15.0	62	78	9	838	24	27	15	32	1.95
414435--415348	92	9.9	91	82	6	970	24	27	15	32	1.95
415371--415571	27	6.7	27	71	20	123	20	31	13	34	1.92
415385--415732	34	10.9	33	71	15	212	19	31	12	35	1.90
415329--415510	61	3.0	60	84	4	222	20	29	14	36	1.92
415385--415739	95	3.8	95	84	3	414	20	31	12	35	1.90
415478--415605	60	2.1	61	82	4	161	20	34	10	34	1.88
415612--415665	27	2.0	27	89	10	85	22	29	16	31	1.96
415574--415693	61	2.0	61	80	6	136	20	32	13	34	1.91
415729--416293	49	11.8	49	75	9	493	25	25	17	31	1.97
415880--416050	88	2.0	87	84	1	225	26	25	19	28	1.99
417180--417245	33	2.0	33	85	5	89	30	13	13	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
422314--422339	2	13.0	2	100	0	52	50	0	0	50	1.00
427048--427073	13	2.0	13	100	0	52	38	15	15	30	1.88
427026--427092	33	2.1	32	91	8	109	31	16	16	35	1.91
427754--427799	22	2.1	22	92	8	76	34	32	0	32	1.58
427804--427862	29	2.0	29	100	0	118	22	33	3	40	1.70
429200--429242	20	2.0	22	86	8	63	4	30	46	18	1.69
429680--429715	13	2.8	13	91	0	54	38	19	11	30	1.86
429750--429804	20	2.8	20	100	0	110	38	14	14	32	1.87
435874--435937	33	2.0	33	93	3	112	31	10	17	40	1.84
439422--439682	87	3.0	87	93	0	423	32	31	1	35	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17