genome.fa.s332.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold332
Parameters: 2 7 7 80 10 50 1000
Length:  2744988

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  8  of  17  ( 1993 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1026479--1026518	5	7.8	5	84	15	55	17	0	2	80	0.83
1027150--1027194	11	4.1	11	86	8	56	88	0	6	4	0.61
1027149--1027194	6	7.8	6	81	13	51	86	0	8	4	0.68
1033075--1033123	4	13.0	4	75	12	50	73	0	26	0	0.83
1033078--1033135	26	2.2	26	84	6	82	75	0	24	0	0.80
1033385--1033409	13	1.9	13	100	0	50	20	0	0	80	0.72
1038574--1039005	215	2.0	214	98	0	837	20	20	13	44	1.85
1039263--1039320	20	2.9	21	77	15	68	65	5	8	20	1.40
1040371--1040517	42	3.5	42	74	7	145	49	12	21	16	1.78
1040376--1040639	85	3.1	85	81	3	257	48	11	21	18	1.80
1040636--1040756	43	2.9	42	76	4	136	51	18	15	14	1.77
1040737--1041217	81	6.0	81	83	1	482	42	15	23	18	1.88
1040737--1041217	161	3.0	160	83	3	545	42	15	23	18	1.88
1040756--1041195	40	10.9	40	70	7	244	42	15	23	18	1.88
1040839--1041237	41	9.9	41	68	8	161	41	14	24	19	1.88
1041371--1041849	44	11.1	44	74	11	323	44	18	20	16	1.87
1041371--1041828	87	5.3	86	73	12	388	43	19	20	16	1.88
1041339--1041844	253	2.0	253	99	0	1003	44	18	20	15	1.86
1042979--1043045	20	3.3	20	82	0	98	35	13	8	41	1.76
1043955--1044002	21	2.4	22	80	16	59	22	22	10	43	1.84
1048033--1048354	162	2.0	160	92	2	538	38	12	14	34	1.84
1049727--1050183	92	5.0	92	80	1	502	31	14	25	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1049734--1050187	184	2.5	183	82	3	561	31	14	25	28	1.95
1053528--1053577	21	2.4	21	83	9	59	48	0	20	32	1.50
1053535--1053577	21	2.0	22	86	4	61	51	0	20	27	1.48
1058672--1058697	13	2.0	13	100	0	52	30	15	15	38	1.88
1059396--1059439	21	2.1	21	83	8	54	25	31	4	38	1.76
1061239--1061264	13	2.0	13	100	0	52	38	15	15	30	1.88
1061250--1061329	20	3.8	20	76	15	79	42	13	15	28	1.85
1063342--1063372	15	2.1	15	93	0	53	12	22	16	48	1.80
1072147--1072270	52	2.4	51	93	4	205	29	17	18	34	1.94
1072147--1072290	52	2.8	50	84	13	177	30	17	18	33	1.94
1072279--1072303	13	1.9	13	100	0	50	36	16	16	32	1.90
1073334--1073362	10	2.9	10	100	0	58	20	20	17	41	1.90
1074697--1074730	13	2.7	13	95	4	61	0	0	20	79	0.73
1075243--1075309	33	2.0	33	85	0	89	44	16	13	25	1.84
1075264--1075289	13	2.0	13	100	0	52	38	15	15	30	1.88
1075329--1075396	19	3.9	18	76	23	83	38	14	11	35	1.83
1075351--1075375	13	1.9	13	100	0	50	32	16	16	36	1.90
1075332--1075394	32	2.0	32	96	0	117	36	15	12	34	1.86
1075433--1075511	21	3.8	21	86	5	115	31	12	17	37	1.88
1076248--1076810	55	9.8	60	83	10	646	23	19	30	26	1.98
1076248--1076811	116	4.9	115	86	7	722	23	19	30	26	1.98
1077824--1077850	12	2.2	12	100	0	54	0	0	14	85	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1077818--1077877	29	2.1	28	84	9	77	1	5	8	85	0.81
1077828--1077877	12	4.2	11	80	14	55	2	4	8	86	0.78
1084274--1084340	34	2.0	34	96	0	125	22	31	22	23	1.98
1086793--1086818	13	2.0	13	100	0	52	38	15	15	30	1.88
1089033--1089077	21	2.1	21	84	8	56	53	4	20	22	1.63
1090881--1090911	15	2.1	15	93	0	53	48	16	22	12	1.80
1093115--1093160	21	2.2	20	81	11	58	32	19	4	43	1.71
1095539--1095564	13	2.0	13	100	0	52	38	15	15	30	1.88
1095619--1095657	20	1.9	21	94	5	71	43	10	10	35	1.73
1099898--1100085	79	2.4	79	81	3	209	31	15	27	25	1.96
1100042--1100109	27	2.5	28	87	2	93	20	13	38	27	1.90
1102026--1102054	10	2.7	11	94	5	51	0	0	13	86	0.58
1102655--1102681	13	2.1	13	100	0	54	40	14	14	29	1.86
1105057--1105091	18	1.9	18	88	11	54	0	5	5	88	0.63
1106555--1106732	88	2.0	88	100	0	356	39	10	12	37	1.78
1108597--1108893	149	2.0	149	80	6	334	36	19	17	26	1.94
1111130--1111547	161	2.6	163	79	5	468	48	6	12	32	1.66
1111464--1111518	20	2.7	21	77	5	60	61	5	9	23	1.46
1111456--1111507	21	2.4	21	84	9	61	67	3	11	17	1.36
1114255--1114368	52	2.2	52	83	0	147	29	10	14	44	1.79
1114976--1115069	47	2.0	47	95	0	170	38	40	2	19	1.63
1116819--1117444	81	7.7	80	75	12	496	29	26	10	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1117034--1117207	90	2.0	90	85	4	237	32	29	8	29	1.86
1116876--1117363	250	2.0	247	81	6	567	29	26	9	34	1.89
1123498--1123825	87	3.8	87	82	4	392	32	12	22	32	1.91
1130859--1130889	16	1.9	16	100	0	62	77	6	6	9	1.12
1130855--1130900	16	2.8	16	80	3	56	82	4	4	8	0.93
1132152--1132248	28	3.6	27	73	10	81	31	30	18	18	1.95
1132398--1132602	82	2.5	82	79	8	202	34	25	17	23	1.96
1132187--1132606	138	3.0	137	80	4	461	32	26	17	23	1.97
1132318--1132641	56	5.9	56	72	7	223	33	26	16	22	1.96
1132318--1132606	28	10.5	28	74	8	191	33	26	17	23	1.96
1132428--1132641	28	7.7	28	77	8	109	34	27	16	21	1.95
1132124--1132606	138	3.5	137	78	5	447	31	27	18	22	1.97
1133497--1133594	36	2.9	31	78	14	90	74	0	22	3	0.95
1133533--1133594	15	4.1	15	77	10	72	79	0	19	1	0.82
1133537--1133585	7	6.9	7	77	13	55	79	0	20	0	0.73
1133533--1133594	23	2.7	22	80	7	79	79	0	19	1	0.82
1138545--1138594	20	2.5	19	78	9	55	50	14	12	24	1.76
1138970--1139006	19	1.9	19	88	0	56	32	10	16	40	1.83
1145612--1145693	28	2.9	28	83	7	96	25	17	32	24	1.96
1145673--1145844	52	3.3	51	80	5	202	32	11	25	30	1.91
1145620--1146009	211	1.8	211	85	4	554	31	12	26	29	1.93
1148300--1148350	20	2.5	20	100	0	102	39	9	15	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1148392--1148417	13	2.0	13	100	0	52	38	15	15	30	1.88
1148456--1148523	19	3.9	18	76	23	83	38	14	11	35	1.83
1148478--1148502	13	1.9	13	100	0	50	32	16	16	36	1.90
1148459--1148521	32	2.0	32	96	0	117	36	15	12	34	1.86
1152582--1153149	283	2.0	284	95	0	1030	31	22	19	26	1.98
1158599--1158633	15	2.3	15	100	0	70	45	20	22	11	1.82
1158995--1159085	9	10.6	9	77	15	86	83	13	1	2	0.80
1158995--1159085	16	5.2	18	77	13	84	83	13	1	2	0.80
1158995--1159085	35	2.6	35	78	13	107	83	13	1	2	0.80
1158996--1159085	43	2.1	42	82	11	112	83	13	1	2	0.80
1160268--1160305	13	2.8	14	80	8	51	36	7	13	42	1.73
1160316--1160642	28	11.5	28	86	3	433	31	29	16	22	1.95
1160769--1160900	49	2.8	46	80	10	158	21	28	18	31	1.96
1164535--1164565	15	2.1	15	93	0	53	48	16	22	12	1.80
1166636--1166674	13	3.0	13	96	0	69	30	17	15	35	1.91
1168468--1168566	37	2.8	37	93	6	170	24	3	24	48	1.65
1169187--1169259	20	3.6	20	81	3	101	36	13	17	31	1.89
1169204--1169280	21	3.7	21	79	6	95	44	11	15	28	1.82
1169187--1169280	41	2.3	41	96	3	172	40	12	17	29	1.86
1169319--1169344	13	2.0	13	100	0	52	38	15	15	30	1.88
1171447--1171489	22	2.0	22	95	0	77	2	16	13	67	1.33
1171473--1171563	47	1.9	47	82	8	114	7	19	9	62	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1171623--1171691	25	2.8	25	86	0	93	14	39	10	36	1.80
1173479--1173522	20	2.2	20	100	0	88	36	9	20	34	1.84
1174759--1174799	21	1.9	22	85	5	57	14	14	0	70	1.16
1174759--1174803	22	2.0	22	83	8	56	15	13	0	71	1.15
1175158--1175502	153	2.2	154	82	7	397	52	8	8	31	1.61
1175766--1175821	29	1.9	29	82	7	69	62	3	3	30	1.29
1176852--1177366	44	11.6	43	72	11	290	41	16	22	20	1.90
1176852--1177316	179	2.6	177	80	6	514	41	16	21	20	1.90
1179094--1179152	22	2.6	21	79	12	55	5	13	5	76	1.13
1180599--1180629	16	1.9	16	100	0	62	19	22	12	45	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17