genome.fa.s382.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold382
Parameters: 2 7 7 80 10 50 1000
Length:  2572505

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  1  of  16  ( 1826 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
547--605	31	1.9	30	93	3	100	33	13	15	37	1.86
4226--4269	18	2.4	18	80	0	52	70	4	0	25	1.06
4475--4619	69	2.1	69	96	0	263	32	31	18	17	1.95
5257--5307	2	25.5	2	100	0	102	0	49	0	50	1.00
5307--5366	2	30.0	2	100	0	120	50	0	0	50	1.00
6583--6710	52	2.5	52	81	1	150	29	17	10	42	1.83
8013--8056	14	2.9	16	83	16	58	68	0	0	31	0.90
11200--11263	14	4.5	14	75	13	51	31	0	4	64	1.14
11090--11342	125	2.0	124	86	3	348	35	0	5	58	1.26
11282--11315	16	2.1	16	88	0	50	47	0	2	50	1.16
14915--14954	15	2.7	15	92	0	62	50	0	0	50	1.00
14922--14985	25	2.5	27	78	14	73	45	1	0	53	1.10
19521--19564	18	2.4	18	100	0	88	40	0	47	11	1.39
22016--22046	12	2.5	13	94	5	55	67	0	32	0	0.91
22097--22127	2	15.5	2	93	0	53	54	0	45	0	0.99
22997--23068	27	2.5	29	79	18	80	37	2	0	59	1.12
23010--23079	30	2.3	31	85	9	92	37	1	0	61	1.05
25349--25418	31	2.3	31	85	2	97	48	0	2	48	1.16
25486--25534	15	3.2	16	83	11	52	67	0	4	28	1.09
25499--25546	13	3.4	14	85	11	62	68	0	2	29	1.01
26385--26440	20	2.8	20	83	0	67	33	14	16	35	1.88
29302--29345	22	2.0	22	86	8	63	38	2	4	54	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29333--29394	31	2.0	32	84	9	83	37	1	1	59	1.17
29367--29396	15	2.0	15	93	0	51	30	0	0	70	0.88
29585--29679	19	5.3	19	70	24	73	62	0	1	36	1.03
29585--29651	11	6.5	11	73	23	65	64	0	1	34	1.03
29617--29727	19	6.6	17	70	25	51	57	1	0	39	1.15
29719--29761	21	2.0	21	91	8	70	67	0	0	32	0.91
29719--29759	15	2.5	17	84	11	59	68	0	0	31	0.90
30148--30215	35	1.9	35	82	11	86	52	1	4	41	1.30
31073--31109	14	2.4	16	91	8	60	32	0	0	67	0.91
31143--31183	21	1.9	22	85	5	57	19	7	2	70	1.22
31618--31659	22	1.9	22	85	9	59	59	0	0	40	0.97
31639--31696	30	2.0	29	86	10	82	51	0	5	43	1.24
32367--32404	19	2.1	19	90	5	60	60	0	2	36	1.11
37573--37625	19	2.8	19	83	11	72	50	7	0	41	1.30
39669--39734	33	2.0	34	85	5	91	28	7	4	59	1.45
39893--39944	11	4.7	12	79	11	58	26	0	5	67	1.13
40202--40263	32	1.9	32	87	6	90	38	4	3	53	1.39
42251--42366	56	2.1	56	95	0	205	37	25	2	34	1.70
42536--42567	16	1.9	17	93	6	57	34	25	21	18	1.96
47206--47270	16	4.1	16	72	16	55	33	0	0	66	0.92
47214--47299	34	2.6	32	78	8	93	32	1	0	66	1.00
47433--47475	10	4.4	11	75	24	51	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47404--47475	27	2.6	29	80	10	80	41	0	0	58	0.98
47428--47491	19	3.5	19	77	14	62	43	1	0	54	1.09
49146--49219	16	4.7	16	79	3	69	55	10	1	32	1.43
49260--49303	22	2.2	19	88	12	61	50	4	4	40	1.43
49919--49977	25	2.3	26	80	8	68	61	8	0	30	1.26
50350--50377	2	14.0	2	100	0	56	50	0	0	50	1.00
50368--50468	46	2.2	46	92	1	168	45	4	9	39	1.59
50459--50492	2	17.0	2	100	0	68	50	0	0	50	1.00
51990--52037	23	2.0	24	88	4	71	56	4	4	35	1.38
52171--52203	15	2.1	17	88	11	52	48	0	6	45	1.27
53503--53557	16	3.5	15	73	11	56	65	0	0	34	0.93
53536--53580	18	2.3	20	85	7	67	66	0	0	33	0.92
53739--53808	23	2.7	25	79	20	74	60	0	1	38	1.06
53745--53857	5	23.4	5	66	22	55	58	0	0	41	0.98
53749--53871	26	4.7	26	70	24	91	57	0	0	42	0.98
53764--53858	6	16.5	6	67	20	51	55	0	0	44	0.99
53749--53857	24	4.3	24	74	15	87	57	0	0	42	0.98
53747--53896	58	2.6	56	80	11	144	58	0	0	40	1.03
53763--53878	33	3.5	33	77	14	89	56	0	0	43	1.05
53755--53893	19	7.8	19	66	23	63	57	0	0	41	1.04
54179--54217	20	1.9	21	89	5	62	51	2	0	46	1.14
55721--55754	13	2.6	13	95	0	59	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59484--59512	12	2.3	13	94	5	51	34	24	24	17	1.96
64889--64918	2	15.0	2	100	0	60	50	0	0	50	1.00
66220--66267	16	3.0	16	87	0	69	0	22	0	77	0.78
66221--66265	14	3.1	14	84	12	63	0	22	0	77	0.76
66220--66268	18	2.8	18	84	9	66	0	24	0	75	0.80
66812--66863	21	2.5	22	81	15	65	61	1	0	36	1.07
66775--66873	50	2.0	49	80	5	110	61	2	1	35	1.14
66831--66871	14	3.0	14	85	7	57	68	0	0	31	0.90
66829--66870	21	2.0	21	86	9	59	71	0	0	28	0.86
67021--67088	18	3.8	18	70	18	70	39	10	10	39	1.73
67371--67431	21	2.8	22	75	22	58	59	0	4	36	1.19
69413--69588	86	2.0	87	87	1	255	42	6	14	36	1.72
69527--69657	69	1.9	69	80	3	156	42	6	17	32	1.76
74959--75089	42	2.9	46	65	15	110	56	3	3	36	1.33
74509--76042	296	5.2	297	92	2	2510	46	6	8	37	1.62
75552--75682	42	2.9	46	65	15	110	56	3	3	36	1.33
74509--76045	593	2.6	593	97	0	2824	46	6	8	37	1.62
82914--82943	15	2.0	15	93	0	51	66	3	0	30	1.07
83658--83697	21	2.1	18	86	13	53	45	5	7	42	1.54
84695--84751	22	2.6	23	83	8	73	36	1	1	59	1.18
84702--84748	8	6.1	8	80	9	53	36	0	2	61	1.08
85244--85289	9	5.0	9	86	2	56	80	0	19	0	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85294--85391	37	2.7	35	81	12	92	34	0	2	63	1.06
85327--85408	24	3.4	24	68	15	62	32	1	2	63	1.15
85386--85434	22	2.3	21	85	3	62	26	4	10	59	1.48
85738--85785	8	5.8	8	77	18	53	81	0	16	2	0.79
85739--85785	22	2.2	22	84	3	60	82	0	14	2	0.75
85922--85968	13	3.4	14	80	13	53	34	0	2	63	1.06
86665--86700	19	1.9	19	88	5	56	44	0	5	50	1.25
86670--86742	18	4.2	18	67	15	55	46	2	1	49	1.24
86854--86913	27	2.1	29	84	6	79	45	1	0	53	1.10
89576--89668	43	2.2	41	83	5	114	31	29	11	27	1.92
94653--94758	15	7.1	15	72	5	54	45	0	2	51	1.15
94670--94701	9	3.6	9	91	0	55	40	0	3	56	1.15
95407--95486	14	5.9	13	69	16	56	48	0	3	47	1.19
96397--96431	17	2.0	17	88	5	52	60	2	5	31	1.35
104318--104397	25	3.2	24	75	10	72	56	0	0	43	0.99
104318--104363	6	7.5	6	87	4	65	63	0	0	36	0.95
105047--105072	2	13.0	2	100	0	52	50	0	50	0	1.00
105237--105283	15	2.9	15	82	14	58	57	0	2	40	1.11
105361--105416	25	2.1	26	81	18	71	57	0	0	42	0.99
106048--106115	29	2.3	29	78	9	75	48	10	1	39	1.46
106454--106502	23	2.1	23	85	7	64	61	0	0	38	0.96
106444--106500	5	11.6	5	74	10	55	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106516--106567	21	2.5	21	82	14	63	65	0	0	34	0.93
107068--107604	126	4.3	127	87	3	730	32	6	26	34	1.82
110501--110531	6	5.2	6	100	0	62	32	32	0	35	1.58
111356--111420	26	2.5	26	80	9	80	23	0	6	70	1.09
111911--111948	18	2.1	19	85	5	51	50	0	5	44	1.24
112110--112153	21	2.1	21	84	12	56	56	6	2	34	1.38
112527--112820	141	2.1	137	81	5	331	50	1	6	41	1.37
112793--112828	18	1.9	19	94	5	65	61	0	2	36	1.11
112939--112993	18	2.8	19	81	10	67	63	5	3	27	1.33
113017--113058	21	2.0	22	90	4	68	38	0	0	61	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16