genome.fa.s382.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold382
Parameters: 2 7 7 80 10 50 1000
Length:  2572505

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  3  of  16  ( 1826 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
270502--270549	12	4.2	12	86	10	73	47	0	2	50	1.12
270501--270550	22	2.3	22	92	0	82	50	0	2	48	1.12
270722--270762	17	2.4	17	91	4	64	29	0	0	70	0.87
271276--271339	22	2.7	24	69	11	60	48	0	3	48	1.17
271584--271618	16	2.2	16	89	0	52	54	0	0	45	0.99
272643--272681	19	2.1	19	90	0	60	35	7	0	56	1.28
276642--276667	13	2.0	13	100	0	52	30	15	15	38	1.88
276706--276778	20	3.6	20	81	9	76	30	16	13	39	1.87
276726--276781	20	2.8	20	89	5	78	30	16	14	39	1.88
287400--287430	16	1.9	16	93	0	53	90	3	6	0	0.55
288419--288515	33	3.0	32	85	7	124	19	27	15	37	1.92
288493--288607	27	4.0	27	72	16	95	21	34	13	29	1.92
288420--288751	66	5.2	65	82	8	321	18	31	12	36	1.89
288419--288753	34	10.4	33	76	12	268	19	31	12	36	1.89
288785--289850	49	21.8	49	89	2	1486	25	26	17	31	1.97
288785--289850	195	5.5	196	91	1	1621	25	26	17	31	1.97
290759--290884	52	2.4	52	94	0	225	35	18	18	27	1.94
291845--292498	326	2.0	326	96	0	1218	31	20	16	31	1.95
295137--295193	20	2.8	20	86	0	87	31	10	14	43	1.79
295105--295254	71	2.1	72	92	1	248	29	14	12	43	1.83
304990--305021	16	2.0	16	93	0	55	53	0	0	46	1.00
307015--307286	135	2.0	135	96	0	499	29	14	31	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310100--310149	26	1.9	26	91	0	82	46	14	14	26	1.81
315734--315815	32	2.5	33	77	18	91	45	1	0	53	1.08
315768--315822	21	2.7	20	84	15	69	47	0	0	52	1.00
317855--317957	16	6.4	16	77	13	104	58	1	2	36	1.24
317851--317945	30	3.0	31	83	7	111	60	2	1	36	1.16
318577--318620	3	14.7	3	100	0	88	34	0	0	65	0.93
320901--320938	16	2.4	16	90	0	58	18	7	7	65	1.43
322890--322931	2	20.5	2	95	4	75	50	0	2	47	1.14
322931--322956	2	13.0	2	100	0	52	50	0	50	0	1.00
326434--326464	15	2.1	15	100	0	62	48	0	12	38	1.42
329855--329936	6	13.2	6	76	12	76	76	1	18	3	0.99
330283--330457	94	1.9	92	91	2	287	35	6	5	52	1.52
331521--332116	157	3.9	154	78	8	554	42	16	12	28	1.85
332244--332766	166	3.2	163	78	5	498	40	12	11	35	1.79
334272--334718	150	2.9	150	79	6	472	52	8	8	30	1.62
334272--334716	153	2.9	147	78	10	427	52	8	8	30	1.62
335784--335810	4	6.8	4	100	0	54	77	0	0	22	0.76
337358--337398	16	2.5	15	85	14	55	78	2	0	19	0.87
341447--341495	19	2.4	19	80	13	53	30	20	4	44	1.70
349712--350791	42	25.7	42	83	3	1197	12	30	19	37	1.90
351150--351200	21	2.4	21	84	12	61	74	1	1	21	1.02
351163--351199	12	2.9	13	88	11	51	78	0	0	21	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352747--352787	16	2.5	15	85	14	55	78	2	0	19	0.87
356327--356382	9	6.3	9	78	12	53	80	0	0	19	0.71
357324--357481	55	2.9	54	76	11	162	10	17	15	55	1.68
358497--359429	97	9.7	96	80	6	933	31	20	10	37	1.87
358500--359429	194	4.8	193	82	8	1045	30	20	10	37	1.87
359379--359601	69	3.2	69	85	0	293	29	18	11	40	1.86
360611--360649	19	2.1	19	100	0	78	41	25	10	23	1.86
366807--367101	148	2.0	150	85	3	400	34	21	11	32	1.89
369218--369571	79	4.5	79	83	3	363	33	12	25	27	1.92
369218--369571	158	2.2	158	82	2	408	33	12	25	27	1.92
372622--372673	2	26.0	2	100	0	104	50	0	0	50	1.00
381639--381694	16	3.2	19	70	19	66	28	33	3	33	1.75
383550--383578	13	2.2	13	100	0	58	41	17	13	27	1.87
389745--389782	20	1.9	20	94	0	67	39	18	10	31	1.85
389717--389783	33	2.0	32	86	11	91	34	16	11	37	1.85
389812--389885	19	3.7	20	81	5	87	36	16	17	29	1.92
393524--393602	33	2.4	33	87	2	115	29	10	12	48	1.74
393562--393769	108	1.9	108	84	4	278	29	9	14	46	1.76
395962--396005	18	2.4	17	82	14	52	15	2	22	59	1.48
396071--396228	76	2.1	77	89	7	243	46	5	5	42	1.49
397776--397806	2	15.5	2	93	0	53	48	0	3	48	1.17
398644--398761	47	2.5	47	81	1	121	29	10	22	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399516--399625	46	2.4	46	92	0	175	22	16	20	40	1.91
399519--399681	46	3.6	45	83	4	166	25	14	18	41	1.89
399598--399691	46	2.0	46	81	4	109	25	9	20	44	1.81
407040--407067	13	2.2	13	100	0	56	32	14	21	32	1.93
409565--409606	19	2.1	21	83	16	54	33	11	14	40	1.82
410075--410241	83	2.0	83	100	0	334	33	7	17	41	1.77
415502--415722	107	2.1	107	82	7	261	30	10	15	43	1.80
418938--419000	32	1.9	33	87	9	94	41	12	15	30	1.85
419893--419959	33	2.0	33	82	5	82	31	19	25	23	1.98
421438--421490	13	4.1	13	92	0	88	45	15	7	32	1.74
426970--426995	13	2.0	13	100	0	52	30	15	15	38	1.88
426950--427013	32	2.0	33	90	3	103	28	14	15	42	1.86
429546--429583	13	2.9	13	96	0	67	31	15	18	34	1.92
431662--431692	15	2.1	15	93	0	53	12	22	16	48	1.80
435760--435785	13	2.0	13	100	0	52	30	15	15	38	1.88
435740--435803	32	2.0	33	87	3	94	28	12	15	43	1.83
437566--437623	19	3.0	20	85	7	84	34	15	17	32	1.91
439593--439642	2	25.5	2	79	4	57	54	4	2	40	1.31
444107--444149	17	2.5	17	78	17	52	27	9	34	27	1.88
444620--444758	46	3.0	46	79	0	152	28	13	17	41	1.87
447037--447067	15	2.1	15	100	0	62	35	6	6	51	1.53
447124--447185	31	2.0	31	100	0	124	41	22	12	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
455277--455443	87	1.9	87	97	2	318	25	24	14	35	1.93
455556--458133	879	3.0	865	90	3	4148	34	13	14	38	1.85
455515--458134	882	3.0	870	90	3	4150	34	13	14	38	1.85
458082--458494	206	2.0	206	100	0	826	28	11	21	39	1.87
463795--463825	16	1.9	16	93	0	53	48	0	9	41	1.36
463655--463963	156	2.0	155	89	3	469	36	11	12	38	1.81
464590--464632	21	2.0	21	90	0	68	55	4	2	37	1.33
468845--468914	33	2.1	33	89	0	104	40	14	11	34	1.82
468870--468894	13	1.9	13	100	0	50	32	16	16	36	1.90
470611--470639	2	14.5	2	100	0	58	51	0	0	48	1.00
472563--472605	17	2.5	17	78	17	52	27	9	34	27	1.88
473076--473188	46	2.5	46	89	0	163	22	12	18	46	1.82
473084--473220	46	3.0	46	82	9	129	23	11	19	45	1.83
474793--474823	15	2.1	15	93	0	53	19	9	6	64	1.45
475494--475529	15	2.4	15	95	0	63	36	8	5	50	1.56
475581--475673	31	3.0	31	100	0	186	41	22	12	22	1.88
483390--483429	2	20.0	2	94	0	71	47	0	2	50	1.14
485572--485653	28	2.9	28	83	7	96	25	17	32	24	1.96
485633--485805	52	3.4	51	80	5	204	32	12	25	30	1.92
485791--485862	27	2.6	27	86	2	90	20	20	34	23	1.96
485847--485977	51	2.5	51	78	12	131	32	9	24	32	1.88
485580--485969	211	1.8	211	87	2	586	30	12	26	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488328--488353	13	2.0	13	100	0	52	38	15	15	30	1.88
488307--488373	33	2.0	33	88	0	98	43	16	14	25	1.86
488393--488460	19	3.9	18	75	23	74	39	14	10	35	1.80
488415--488439	13	1.9	13	100	0	50	32	16	16	36	1.90
488396--488458	32	2.0	32	93	0	108	38	15	11	34	1.83
488496--488553	21	2.7	22	84	7	84	32	13	15	37	1.87
488627--488689	31	2.0	32	87	3	92	34	25	17	22	1.95
489329--490006	55	12.3	55	90	4	989	20	20	30	28	1.98
489403--489933	28	19.2	28	59	18	87	21	19	30	28	1.98
491736--491770	18	1.9	18	88	0	52	40	25	11	22	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16