genome.fa.s382.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold382
Parameters: 2 7 7 80 10 50 1000
Length:  2572505

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  7  of  16  ( 1826 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1037443--1037499	3	19.0	3	100	0	114	66	0	0	33	0.92
1038474--1038866	131	3.1	124	76	13	386	34	13	23	28	1.93
1038730--1038897	79	2.1	79	85	2	230	34	14	22	28	1.94
1038852--1038922	28	2.6	27	73	10	63	32	22	23	21	1.98
1038957--1039030	28	2.6	28	83	10	98	24	18	31	25	1.98
1041182--1041240	20	2.9	21	82	7	77	42	11	15	30	1.83
1041221--1041251	13	2.4	13	100	0	62	38	16	16	29	1.90
1041202--1041269	33	2.1	33	88	5	102	44	14	14	26	1.84
1041182--1041269	20	4.8	20	71	23	75	43	13	14	28	1.84
1041541--1041578	3	12.7	3	100	0	76	68	0	0	31	0.90
1042202--1042243	20	2.1	20	100	0	84	61	9	14	14	1.55
1042796--1042973	89	2.0	89	97	1	340	24	7	4	62	1.41
1043524--1043576	15	3.7	15	72	18	51	56	0	0	43	0.99
1043945--1044001	22	2.7	21	83	10	71	56	0	0	43	0.99
1043945--1044012	22	3.1	22	72	15	61	54	0	0	45	0.99
1045112--1045176	16	3.9	17	77	15	64	63	1	0	35	1.04
1045130--1045182	16	3.3	16	82	7	63	60	0	0	39	0.97
1047891--1048225	121	2.8	121	82	5	394	36	14	11	37	1.82
1047941--1048239	122	2.5	120	83	6	345	36	14	11	37	1.82
1052179--1052206	14	2.0	14	100	0	56	35	0	0	64	0.94
1052818--1053023	20	9.7	20	69	15	137	30	15	11	42	1.82
1052807--1052977	91	1.9	91	96	0	315	30	14	12	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1053930--1053973	22	1.9	24	86	9	65	27	18	11	43	1.84
1056726--1056759	14	2.4	14	90	0	50	29	29	20	20	1.98
1060014--1060081	21	3.2	21	78	19	63	73	8	10	7	1.25
1061825--1061862	19	2.0	19	100	0	76	26	10	0	63	1.27
1072544--1072648	38	2.8	38	85	0	138	33	24	14	27	1.94
1077199--1077279	31	2.6	31	77	11	85	41	27	3	27	1.72
1077720--1077789	24	2.8	25	89	6	99	44	25	8	21	1.80
1077774--1077844	27	2.6	27	88	6	99	46	23	7	22	1.76
1077722--1077847	24	4.9	24	77	12	92	46	25	7	21	1.77
1082313--1082439	27	4.9	25	78	12	105	46	24	7	21	1.77
1082315--1082437	25	4.7	27	82	8	105	45	25	7	21	1.77
1082315--1082440	24	4.9	24	73	16	83	46	24	7	22	1.77
1082728--1082783	22	2.6	22	83	8	62	44	0	0	55	0.99
1083945--1084021	28	2.8	28	84	7	86	25	18	31	24	1.97
1084005--1084338	52	6.3	52	69	13	157	31	12	25	29	1.93
1084157--1084232	27	2.8	28	90	6	111	22	21	32	23	1.98
1083938--1084343	212	1.9	212	88	3	620	31	13	26	28	1.94
1084220--1084338	51	2.3	53	85	7	154	33	11	22	31	1.90
1086705--1086730	13	2.0	13	100	0	52	38	15	15	30	1.88
1086684--1086750	33	2.0	33	88	0	98	43	16	14	25	1.86
1086770--1086837	19	3.9	18	76	23	83	38	14	11	35	1.83
1086792--1086816	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1086773--1086835	32	2.0	32	96	0	117	36	15	12	34	1.86
1087308--1087418	6	18.8	6	74	17	83	62	0	0	37	0.96
1087299--1087409	8	13.8	8	67	20	54	61	0	0	37	1.02
1087308--1087426	19	6.3	18	69	22	68	62	0	0	36	1.01
1087395--1087435	19	2.2	19	86	0	55	63	2	4	29	1.28
1089005--1089049	19	2.5	18	92	7	74	53	4	17	24	1.62
1090376--1090695	157	2.1	154	96	1	586	47	8	7	36	1.61
1093113--1093166	19	2.8	20	91	2	83	37	16	16	29	1.91
1093493--1093526	11	2.9	12	86	8	52	52	0	0	47	1.00
1093834--1093891	28	2.1	28	83	0	71	44	1	8	44	1.44
1096089--1096126	18	2.1	18	95	0	67	39	18	5	36	1.73
1098291--1098412	65	1.9	65	79	6	140	47	9	11	31	1.72
1098639--1098683	22	2.1	21	92	8	74	46	6	8	37	1.61
1109328--1109370	21	2.0	21	82	8	52	60	6	0	32	1.23
1112426--1112463	16	2.4	16	91	8	60	57	5	0	36	1.21
1113264--1114994	580	3.0	578	88	2	2601	38	12	12	36	1.81
1115948--1115982	18	1.9	18	94	0	61	42	20	5	31	1.75
1116814--1116882	28	2.4	28	76	11	70	42	1	5	50	1.35
1117656--1117706	2	26.0	2	82	11	61	52	1	0	45	1.12
1117931--1117956	3	8.7	3	100	0	52	30	0	0	69	0.89
1118466--1118528	29	2.1	30	82	2	74	66	9	0	23	1.21
1122504--1122613	43	2.7	38	73	16	89	49	0	0	50	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1122819--1122857	3	13.0	3	94	0	51	58	0	0	41	0.98
1122820--1122863	21	2.1	21	95	0	79	54	0	0	45	0.99
1122819--1122866	24	2.0	24	100	0	96	54	0	0	45	0.99
1122823--1122860	18	2.1	18	90	0	58	55	0	0	44	0.99
1123091--1123142	24	2.2	24	100	0	104	34	13	7	44	1.72
1123617--1123647	16	1.9	16	93	0	53	58	3	0	38	1.15
1123798--1123837	11	3.5	12	80	19	50	67	0	0	32	0.91
1123798--1123900	36	3.0	33	75	10	100	63	1	0	34	1.06
1123860--1123920	32	1.9	32	86	6	88	54	0	0	45	1.00
1138467--1138536	36	1.9	36	82	2	86	60	1	1	37	1.15
1139098--1139166	30	2.3	29	78	11	77	44	0	2	52	1.16
1140924--1140978	28	2.0	28	81	0	65	58	0	1	40	1.09
1144076--1144122	22	2.1	23	88	7	71	38	0	10	51	1.37
1144163--1144206	22	2.0	22	81	0	52	40	0	0	59	0.98
1144805--1144838	11	3.0	11	91	4	50	32	0	0	67	0.91
1144818--1144873	27	2.0	28	83	13	71	37	0	0	62	0.95
1145174--1145233	29	2.1	29	100	0	120	38	16	18	26	1.92
1146422--1146471	18	2.7	19	74	20	52	58	0	0	42	0.98
1149527--1149668	75	1.9	75	85	2	196	42	14	14	28	1.84
1149849--1149935	37	2.4	37	96	1	158	34	18	13	33	1.90
1151255--1151717	235	2.0	235	98	0	899	30	23	12	32	1.93
1154071--1154146	21	3.6	21	87	3	109	34	14	15	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1154178--1154267	19	5.1	18	71	22	75	35	12	15	36	1.85
1154224--1154248	13	1.9	13	100	0	50	36	16	16	32	1.90
1154203--1154275	32	2.3	32	97	0	137	34	12	17	35	1.88
1154319--1154344	13	2.0	13	100	0	52	30	15	15	38	1.88
1154299--1154365	34	2.0	33	88	2	98	25	14	13	46	1.82
1156710--1156829	51	2.4	51	83	8	138	30	21	11	36	1.89
1156813--1156885	27	2.7	27	89	6	103	24	31	20	23	1.98
1156840--1157010	79	2.2	78	83	6	202	26	25	15	32	1.96
1156951--1157117	51	3.3	51	87	2	192	30	26	10	32	1.90
1156710--1157256	289	1.9	287	88	2	819	27	26	13	32	1.94
1157131--1157335	79	2.6	78	82	4	225	23	29	17	29	1.97
1166523--1166548	13	2.0	13	100	0	52	30	15	30	23	1.95
1169680--1169765	1	86.0	1	71	0	64	86	9	4	0	0.71
1169681--1169734	11	4.9	12	84	15	73	87	12	0	0	0.56
1169680--1169765	28	3.1	27	83	6	100	86	9	4	0	0.71
1169680--1169765	17	5.2	16	80	12	86	86	9	4	0	0.71
1170732--1170913	100	1.8	99	90	1	292	23	30	19	26	1.98
1170860--1171244	55	6.9	55	86	7	501	28	27	20	23	1.99
1172003--1172077	21	3.6	21	81	3	89	37	13	13	36	1.84
1172111--1172200	19	5.1	18	71	22	75	35	12	15	36	1.85
1172157--1172181	13	1.9	13	100	0	50	36	16	16	32	1.90
1172136--1172208	32	2.3	32	97	0	137	34	12	17	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1172252--1172277	13	2.0	13	100	0	52	30	15	15	38	1.88
1172232--1172298	34	2.0	33	91	2	107	25	16	13	44	1.84
1172759--1172810	19	2.7	20	87	6	79	42	15	13	28	1.85
1175814--1175917	51	2.0	51	85	7	140	32	24	8	34	1.86
1175899--1175975	27	2.8	28	84	2	93	24	32	18	24	1.97
1175928--1176102	79	2.2	78	84	6	219	27	25	14	32	1.95
1176061--1176205	51	2.8	51	87	1	200	33	24	8	33	1.85
1176194--1176265	28	2.6	28	84	8	85	23	36	18	22	1.95
1175818--1176344	289	1.8	287	89	4	830	28	26	12	32	1.93
1176221--1176423	79	2.6	79	82	3	221	23	31	16	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16