genome.fa.s382.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold382
Parameters: 2 7 7 80 10 50 1000
Length:  2572505

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  16  of  16  ( 1826 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2532239--2532322	42	2.0	43	86	6	118	0	1	15	83	0.71
2532237--2532324	20	4.4	20	78	13	92	0	2	14	82	0.76
2539083--2539419	169	2.0	169	100	0	674	27	16	25	29	1.97
2544359--2544403	21	2.2	21	88	4	65	28	11	17	42	1.84
2544504--2544557	19	2.9	17	75	20	54	27	14	14	42	1.85
2549019--2549524	165	3.1	164	79	4	450	30	11	8	49	1.68
2552406--2552461	19	2.9	19	83	2	76	33	17	14	33	1.90
2552446--2552472	13	2.1	13	100	0	54	40	14	14	29	1.86
2553013--2553088	20	3.7	22	79	11	81	23	30	3	42	1.72
2553034--2553091	19	2.8	20	80	15	66	25	31	5	37	1.78
2553096--2553163	22	3.3	20	78	11	66	30	25	5	38	1.79
2553034--2553329	72	4.2	72	83	9	426	28	25	8	37	1.85
2553075--2553368	141	2.1	141	98	0	570	29	23	8	38	1.84
2556959--2561888	158	31.2	157	65	15	747	31	19	12	36	1.90
2556586--2561945	473	11.3	475	84	3	6432	31	19	12	36	1.90
2566860--2566890	13	2.4	13	94	0	53	35	12	16	35	1.87
2566935--2567010	20	3.8	20	89	1	109	32	17	15	34	1.91
2566935--2567010	39	1.9	40	89	2	118	32	17	15	34	1.91
2566995--2567021	13	2.1	13	100	0	54	40	14	14	29	1.86
2566976--2567040	33	2.0	32	87	3	94	40	13	15	30	1.86
2571333--2571394	31	2.0	31	100	0	124	38	22	16	22	1.92
2571803--2571868	10	6.5	10	77	16	55	6	18	0	75	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2571798--2571869	31	2.3	31	85	4	92	6	19	1	72	1.15
2571803--2571868	9	6.5	10	73	16	55	6	18	0	75	1.00
2571953--2572059	53	2.0	53	96	0	196	23	13	24	39	1.90
2572461--2572487	13	2.1	13	100	0	54	7	18	44	29	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16

The End!