genome.fa.s382.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold382
Parameters: 2 7 7 80 10 50 1000
Length:  2572505

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  11  of  16  ( 1826 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1717673--1717737	19	3.6	19	73	26	70	27	12	15	44	1.82
1719000--1719135	51	2.7	51	87	0	164	44	11	16	27	1.82
1719099--1719171	20	3.7	20	87	3	103	41	9	16	32	1.81
1725356--1725424	18	3.9	17	80	14	61	17	2	4	75	1.09
1728621--1728672	19	2.7	20	88	8	72	26	15	13	44	1.84
1728717--1728774	20	2.9	20	85	10	91	37	12	18	31	1.88
1732528--1732552	13	1.9	13	100	0	50	32	16	16	36	1.90
1732603--1732640	20	1.9	20	94	0	67	31	10	18	39	1.85
1732623--1732670	13	4.2	13	70	29	54	31	12	18	37	1.88
1732602--1732670	33	2.1	33	89	10	106	31	11	18	37	1.87
1736275--1736311	18	2.1	18	100	0	74	37	8	10	43	1.69
1741342--1741393	19	2.7	20	82	8	63	32	15	17	34	1.91
1741314--1741375	32	1.9	33	86	3	90	30	12	14	41	1.83
1741426--1741463	20	1.9	20	94	0	67	31	10	18	39	1.85
1741446--1741471	13	2.0	13	100	0	52	30	15	15	38	1.88
1741425--1741493	33	2.1	33	86	10	97	33	11	17	37	1.86
1750054--1750078	13	1.9	13	100	0	50	36	16	16	32	1.90
1750120--1750189	33	2.1	33	89	0	104	40	14	11	34	1.82
1750145--1750169	13	1.9	13	100	0	50	32	16	16	36	1.90
1752225--1752283	32	1.9	30	83	13	75	59	10	10	20	1.58
1752564--1752589	13	2.0	13	100	0	52	30	15	15	38	1.88
1752543--1752607	32	2.0	33	93	6	114	27	12	15	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1752543--1752607	19	3.6	19	73	26	70	27	12	15	44	1.82
1753332--1753429	48	2.0	48	100	0	196	36	15	4	43	1.66
1754717--1754759	20	2.1	20	82	4	50	9	27	44	18	1.80
1757308--1757338	15	2.1	15	93	0	53	12	22	16	48	1.80
1761067--1761125	32	1.9	30	83	13	75	59	10	10	20	1.58
1761406--1761431	13	2.0	13	100	0	52	30	15	15	38	1.88
1761385--1761449	32	2.0	33	93	6	114	27	12	15	44	1.82
1761385--1761449	19	3.6	19	73	26	70	27	12	15	44	1.82
1762413--1762437	13	1.9	13	100	0	50	36	16	16	32	1.90
1763876--1763942	33	2.0	33	88	0	98	23	29	17	28	1.97
1763944--1764336	196	2.0	196	95	0	714	23	14	17	44	1.86
1765099--1765163	33	2.0	33	90	6	105	33	15	20	30	1.93
1765119--1765143	13	1.9	13	100	0	50	36	16	16	32	1.90
1766177--1766223	13	4.1	13	70	30	52	38	14	14	31	1.87
1766328--1766379	20	2.5	20	77	20	54	36	23	0	40	1.55
1771818--1772107	79	3.7	79	78	3	307	33	13	24	27	1.93
1772056--1772175	51	2.4	51	78	5	145	32	11	24	31	1.91
1774560--1774633	20	3.7	19	87	7	103	41	13	16	28	1.86
1774672--1774697	13	2.0	13	100	0	52	38	15	15	30	1.88
1777272--1777312	17	2.5	17	92	4	66	19	2	0	78	0.87
1778963--1779093	66	2.0	66	87	3	192	19	19	13	46	1.83
1779205--1779308	54	1.9	54	92	0	172	14	19	22	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1781111--1781214	32	3.3	31	76	5	111	40	10	6	42	1.66
1781848--1781884	18	2.0	19	89	5	58	35	0	2	62	1.10
1785370--1785407	14	2.6	15	91	8	69	39	10	13	36	1.79
1789096--1789135	3	13.3	3	100	0	80	32	0	0	67	0.91
1789563--1789597	17	2.1	17	89	10	54	37	0	0	62	0.95
1789576--1789608	12	2.6	13	85	9	50	45	0	0	54	0.99
1797344--1797419	13	5.4	14	73	16	68	56	0	0	43	0.99
1798045--1798078	10	3.3	10	84	8	50	73	2	0	23	0.97
1797855--1798301	214	2.1	214	99	0	878	51	9	8	30	1.65
1798259--1798292	10	3.3	10	84	8	50	73	2	0	23	0.97
1798462--1798505	19	2.4	19	85	11	56	59	0	0	40	0.98
1798462--1798513	20	2.7	19	85	8	61	59	0	0	40	0.97
1798431--1798667	129	1.8	127	80	14	281	59	5	0	34	1.25
1798598--1798645	22	2.2	22	82	14	55	64	2	0	33	1.05
1798831--1798876	20	2.3	20	88	0	65	58	0	0	41	0.98
1798842--1798881	20	2.0	20	100	0	80	55	0	0	45	0.99
1798980--1799022	19	2.2	20	91	4	70	48	0	0	51	1.00
1799623--1799671	17	2.9	16	77	19	55	48	4	0	46	1.20
1802115--1802166	23	2.3	22	83	6	68	34	13	9	42	1.77
1802355--1802416	24	2.6	24	89	0	97	29	12	17	40	1.87
1807630--1807866	87	2.7	87	81	5	266	35	9	24	30	1.87
1811755--1811784	11	2.7	11	89	0	51	20	0	6	73	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1811978--1812026	2	25.0	2	95	4	91	51	0	0	48	1.00
1812572--1812619	13	3.7	13	81	13	55	47	0	2	50	1.12
1812545--1812660	47	2.4	48	76	19	118	48	1	3	46	1.29
1812572--1812650	22	3.3	22	71	25	63	48	1	2	48	1.23
1812572--1812620	14	3.8	13	77	20	57	48	0	2	48	1.12
1818269--1818337	33	2.1	33	84	10	88	36	15	15	31	1.90
1818366--1818423	19	3.0	20	82	7	75	36	17	15	31	1.91
1818388--1818464	32	2.4	32	95	0	136	40	11	15	32	1.84
1821478--1821522	13	3.6	13	82	11	58	80	0	4	15	0.87
1822736--1823151	93	4.5	93	75	4	327	47	12	18	20	1.81
1826037--1826105	34	2.0	34	88	5	104	27	21	10	40	1.85
1826731--1826870	52	2.7	52	84	0	172	32	14	10	42	1.80
1829031--1829093	27	2.3	27	89	5	92	23	31	17	26	1.97
1830750--1830782	16	2.1	16	94	0	57	39	27	0	33	1.57
1831548--1831591	2	22.0	2	95	0	79	50	2	0	47	1.13
1837817--1837841	13	1.9	13	100	0	50	32	16	16	36	1.90
1839355--1839409	21	2.6	21	85	0	65	18	21	0	60	1.37
1839370--1839413	21	2.1	21	91	0	70	20	18	0	61	1.35
1841521--1841557	13	2.8	14	92	8	60	37	21	13	27	1.91
1841610--1841675	29	2.4	28	87	7	91	43	12	21	22	1.85
1841586--1841693	46	2.4	44	74	15	107	40	10	24	25	1.86
1841819--1841859	21	2.0	21	85	9	57	36	12	14	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1843674--1844116	163	2.7	163	91	1	710	42	9	10	37	1.72
1844574--1844598	11	2.3	11	100	0	50	48	16	20	16	1.82
1845453--1846076	166	3.8	165	77	7	536	49	9	10	30	1.68
1847943--1848066	59	2.1	58	86	1	167	40	4	4	51	1.39
1849400--1849449	13	4.3	13	72	27	58	32	12	18	38	1.87
1849381--1849449	33	2.1	33	91	5	113	31	11	18	37	1.87
1859502--1859539	20	1.9	20	89	10	60	76	5	5	13	1.13
1859874--1859928	17	3.3	16	80	7	65	1	18	0	80	0.81
1859871--1859929	24	2.8	21	83	16	77	1	16	0	81	0.78
1859893--1859930	20	1.9	20	94	0	67	5	21	0	73	1.02
1859890--1859943	24	2.2	24	77	6	56	7	22	0	70	1.12
1861154--1861723	32	17.8	32	95	0	998	16	18	33	30	1.94
1861706--1862085	27	14.0	26	88	5	526	29	13	33	23	1.93
1861706--1862085	54	7.0	54	94	0	661	29	13	33	23	1.93
1862059--1862116	30	1.9	31	82	10	75	32	15	25	25	1.95
1865487--1865563	21	3.8	20	84	5	91	38	14	12	33	1.84
1865482--1865563	41	2.0	40	86	6	112	37	15	12	34	1.85
1865599--1865666	19	3.9	19	74	21	76	35	10	13	41	1.78
1865603--1865663	32	1.9	32	93	0	104	36	11	13	39	1.80
1865706--1865731	13	2.0	13	100	0	52	30	15	15	38	1.88
1865686--1865752	33	2.0	33	88	0	98	25	14	16	43	1.86
1868200--1868272	27	2.7	27	87	6	94	23	34	21	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1868257--1868425	51	3.3	51	79	4	194	30	26	10	33	1.89
1868408--1868489	28	2.9	28	82	7	96	24	31	17	26	1.97
1880865--1880912	13	3.6	13	85	2	60	87	8	4	0	0.66
1880865--1880912	14	3.4	14	85	8	62	87	8	4	0	0.66
1881894--1882671	55	13.9	55	86	5	972	27	28	20	22	1.99
1881894--1882694	276	2.9	276	87	5	1055	27	28	20	22	1.99
1883320--1883396	21	3.8	20	89	5	109	38	15	12	32	1.86
1883432--1883499	19	3.9	19	78	21	85	35	11	14	38	1.83
1883434--1883496	32	2.0	32	96	0	117	34	12	15	36	1.86
1883453--1883477	13	1.9	13	100	0	50	36	16	16	32	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16