genome.fa.s382.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold382
Parameters: 2 7 7 80 10 50 1000
Length:  2572505

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  6  of  16  ( 1826 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
843632--843669	15	2.6	15	80	19	53	73	0	0	26	0.83
847107--847182	33	2.3	33	72	4	82	40	9	7	42	1.66
850098--850131	11	3.0	11	91	4	50	32	0	0	67	0.91
850083--850146	31	2.1	31	82	5	76	34	0	1	64	1.03
850111--850164	26	2.0	26	83	16	67	37	0	0	62	0.95
850514--850551	14	3.0	13	88	11	53	28	0	5	65	1.14
850870--850921	13	4.0	12	74	16	50	44	7	9	38	1.66
855590--855621	12	2.7	12	95	0	55	18	37	25	18	1.94
855620--855672	27	2.0	27	96	0	97	45	7	11	35	1.69
857434--857465	14	2.1	16	88	11	50	59	0	0	40	0.97
857807--857859	24	2.3	23	83	9	63	54	0	0	45	0.99
857805--857858	18	2.9	18	76	17	58	57	0	0	42	0.98
858578--858603	13	2.0	13	100	0	52	38	23	0	38	1.55
860925--861066	75	1.9	75	85	2	196	42	14	14	28	1.84
861247--861333	37	2.4	37	98	1	167	34	17	13	34	1.89
865233--865309	21	3.7	21	84	3	102	36	14	14	35	1.86
865387--865411	13	1.9	13	100	0	50	36	16	16	32	1.90
865366--865438	32	2.3	32	95	0	128	34	12	16	36	1.86
865368--865430	19	3.7	18	74	24	64	33	12	15	38	1.86
865482--865507	13	2.0	13	100	0	52	30	15	15	38	1.88
867873--867993	51	2.4	50	86	8	156	30	21	11	36	1.89
867975--868050	27	2.8	28	90	6	111	23	32	19	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
868004--868178	79	2.2	79	84	6	221	27	26	14	31	1.95
868115--868281	51	3.3	50	81	5	174	31	26	9	32	1.88
868295--868497	78	2.6	78	80	2	228	23	30	17	29	1.97
867873--868419	289	1.9	287	87	2	801	28	26	12	32	1.93
880848--880882	12	2.9	12	100	0	70	85	14	0	0	0.59
880847--880887	14	2.6	16	85	11	50	85	14	0	0	0.60
881854--882037	100	1.8	99	91	1	305	23	31	19	25	1.98
881951--882417	55	8.4	55	87	6	660	28	28	20	22	1.99
881951--882417	109	4.2	110	86	7	660	28	28	20	22	1.99
881982--882417	164	2.7	164	96	1	784	28	28	20	22	1.99
883216--883305	19	5.1	18	71	22	75	35	11	15	37	1.83
883241--883313	32	2.3	32	95	0	128	34	10	17	36	1.85
883357--883382	13	2.0	13	100	0	52	30	15	15	38	1.88
885399--885620	79	2.8	78	76	10	236	27	25	13	32	1.94
885557--885723	51	3.3	51	84	2	210	31	25	10	32	1.90
885707--885783	28	2.8	28	82	7	86	23	35	19	22	1.96
885740--885969	78	2.9	78	75	5	212	25	28	14	31	1.95
888570--888737	79	2.1	79	86	2	230	33	16	25	25	1.96
888672--888790	51	2.3	51	89	0	184	31	13	26	27	1.94
888617--888861	130	1.9	127	85	5	332	34	11	25	28	1.91
888723--888894	76	2.2	77	85	5	222	30	13	27	27	1.95
888547--888995	206	2.2	207	82	2	526	33	13	25	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
888886--888995	51	2.2	51	86	3	150	35	10	24	29	1.89
891311--891366	20	2.8	19	84	7	76	46	14	14	25	1.82
899724--899762	2	19.5	2	100	0	78	48	0	0	51	1.00
899834--899881	23	2.2	21	82	14	53	60	0	6	33	1.22
900027--900061	15	2.3	15	90	0	52	40	0	2	57	1.14
900448--900502	29	1.9	28	81	3	65	56	1	3	38	1.28
903588--903619	12	2.8	12	90	9	50	62	6	0	31	1.20
903811--903857	15	3.1	15	70	11	51	57	4	10	27	1.51
903836--903881	23	2.0	23	86	0	65	47	8	10	32	1.69
905768--905794	2	13.5	2	100	0	54	51	0	0	48	1.00
906535--906568	13	2.6	13	80	0	50	44	8	8	38	1.67
907402--907439	18	2.1	18	90	0	58	42	5	0	52	1.24
910823--910855	17	1.9	17	93	0	57	24	18	18	39	1.92
911409--911489	40	2.0	40	100	0	162	38	17	12	32	1.87
914523--914593	27	2.6	27	88	6	99	46	23	7	22	1.76
916476--916521	21	2.1	22	88	4	67	19	28	19	32	1.96
918968--919013	20	2.3	20	88	0	65	34	4	50	10	1.57
919090--919160	27	2.6	27	88	6	99	46	23	7	22	1.76
925774--925920	38	3.9	38	78	4	149	26	16	20	36	1.93
931648--931680	17	1.9	17	88	11	50	60	6	6	27	1.44
931672--931705	15	2.2	15	89	5	50	76	0	2	20	0.92
932423--932797	186	2.0	187	93	3	650	52	10	6	30	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
933651--933694	2	22.0	2	100	0	88	50	0	0	50	1.00
935163--935403	97	2.5	96	93	2	410	28	14	31	26	1.95
937571--937648	40	2.0	39	87	2	111	42	12	11	33	1.79
937574--937648	20	3.8	20	76	0	87	42	12	12	33	1.79
938213--939099	29	30.9	29	88	4	1327	22	16	32	28	1.96
938207--939099	57	15.6	58	92	2	1337	22	16	31	28	1.96
938213--939099	86	10.3	87	89	4	1327	22	16	32	28	1.96
940342--940371	12	2.6	12	94	5	53	0	0	13	86	0.57
950063--950102	19	2.1	19	85	0	53	70	7	10	12	1.35
951993--952228	97	2.4	97	95	0	418	28	14	30	26	1.95
954402--954478	40	2.0	38	84	5	100	42	12	10	33	1.77
954405--954478	20	3.8	20	76	1	69	43	12	10	33	1.77
962109--962153	21	2.1	22	88	8	67	55	4	17	22	1.60
963957--963987	15	2.1	15	93	0	53	48	16	22	12	1.80
966051--966102	13	4.0	13	100	0	104	30	15	15	38	1.88
966223--966268	21	2.2	20	81	11	58	32	19	4	43	1.71
968648--968673	13	2.0	13	100	0	52	38	15	15	30	1.88
968630--968693	32	2.0	33	87	3	94	40	17	14	28	1.88
976755--976780	13	2.0	13	100	0	52	30	7	15	46	1.74
977233--977259	1	27.0	1	100	0	54	0	100	0	0	0.00
977679--977717	2	19.5	2	94	0	69	48	2	0	48	1.15
982349--982667	164	1.9	164	93	0	548	27	11	17	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
984493--984645	78	2.0	78	82	5	186	49	5	4	41	1.46
987042--987068	13	2.1	13	100	0	54	48	7	7	37	1.59
989045--989240	94	2.1	94	82	3	229	32	13	10	43	1.78
997017--997100	32	2.5	33	81	14	102	55	1	4	38	1.28
997068--997120	20	2.5	20	79	11	54	58	1	7	32	1.37
1004414--1004486	20	3.6	20	81	3	101	35	13	19	31	1.91
1004432--1004507	21	3.7	21	80	3	100	42	11	17	28	1.84
1004414--1004507	41	2.3	41	98	0	179	39	12	18	29	1.88
1004546--1004571	13	2.0	13	100	0	52	38	15	15	30	1.88
1006785--1006829	21	2.1	21	84	8	56	53	4	20	22	1.63
1008634--1008664	15	2.1	15	93	0	53	48	16	22	12	1.80
1010736--1010773	13	2.9	13	96	0	67	34	18	15	31	1.92
1013202--1013274	20	3.6	20	81	3	101	35	13	19	31	1.91
1013220--1013295	21	3.7	21	80	3	100	42	11	17	28	1.84
1013202--1013295	41	2.3	41	98	0	179	39	12	18	29	1.88
1013334--1013359	13	2.0	13	100	0	52	38	15	15	30	1.88
1016615--1016655	21	2.0	21	85	9	57	21	21	17	39	1.93
1017719--1017744	13	2.0	13	100	0	52	38	15	30	15	1.88
1018380--1018556	20	8.8	20	72	20	111	27	15	14	42	1.86
1018468--1018532	33	2.0	33	93	0	112	27	15	15	41	1.87
1018487--1018517	13	2.4	13	88	0	53	29	12	16	41	1.85
1020844--1021019	51	3.5	50	77	6	178	28	26	10	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1020955--1021437	79	6.2	77	85	3	549	27	25	14	32	1.94
1020955--1021437	157	3.1	153	81	5	567	27	25	14	32	1.94
1024657--1024691	17	2.1	17	100	0	70	34	17	11	37	1.85
1024679--1024900	108	2.1	108	85	3	295	31	11	13	43	1.80
1027108--1027283	90	1.9	91	87	1	255	34	15	10	40	1.81
1032407--1032440	13	2.6	13	100	0	68	32	5	44	17	1.73
1032494--1032539	24	1.9	25	86	8	69	47	21	8	21	1.77
1032520--1032598	27	2.9	27	86	0	113	46	21	10	21	1.80
1036845--1036890	24	1.9	24	90	0	74	47	26	4	21	1.69
1036871--1036949	27	2.9	27	75	0	86	45	20	7	26	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16