genome.fa.s382.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold382
Parameters: 2 7 7 80 10 50 1000
Length:  2572505

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  8  of  16  ( 1826 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1175801--1176389	289	2.0	287	85	5	796	27	26	13	32	1.93
1179033--1179205	79	2.2	79	87	2	249	32	16	26	24	1.96
1179140--1179258	51	2.3	51	89	0	184	31	13	26	27	1.94
1179085--1179329	130	1.9	127	87	4	357	35	11	25	27	1.91
1179191--1179413	76	2.9	76	81	9	236	32	12	26	28	1.93
1179033--1179463	206	2.1	207	83	3	544	33	13	25	26	1.94
1179350--1179475	51	2.5	51	85	5	166	35	11	25	27	1.90
1181779--1181834	20	2.8	19	84	7	76	48	14	12	25	1.78
1181873--1181898	13	2.0	13	100	0	52	38	15	15	30	1.88
1185054--1185101	23	2.2	21	82	14	53	60	0	6	33	1.22
1185247--1185281	15	2.3	15	90	0	52	40	0	2	57	1.14
1189036--1189081	23	2.0	23	86	0	65	47	8	10	32	1.69
1190960--1190994	2	17.5	2	100	0	70	51	0	0	48	1.00
1191727--1191760	13	2.6	13	80	0	50	44	8	8	38	1.67
1192594--1192631	18	2.1	18	90	0	58	42	5	0	52	1.24
1200787--1200819	17	1.9	17	93	0	57	24	18	18	39	1.92
1201406--1201451	24	1.9	24	95	0	83	45	28	6	19	1.75
1201456--1201538	28	3.0	28	96	0	148	49	19	10	20	1.78
1203442--1203487	21	2.1	22	84	4	58	19	30	19	30	1.97
1205865--1205910	24	1.9	24	95	0	83	45	28	6	19	1.75
1205915--1205997	28	3.0	28	96	0	148	49	19	10	20	1.78
1206268--1206388	40	3.0	40	97	0	233	38	17	13	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1209248--1209334	28	3.4	25	77	12	77	47	22	8	21	1.77
1209264--1209341	28	2.9	27	81	9	88	48	23	6	21	1.73
1211246--1211291	21	2.1	22	84	4	58	19	30	19	30	1.97
1212837--1212877	17	2.4	17	100	0	82	0	31	9	58	1.31
1213845--1213890	24	1.9	24	90	0	74	43	28	6	21	1.77
1213871--1213948	28	2.9	28	86	7	99	48	23	6	21	1.73
1220569--1220612	21	2.1	21	100	0	88	25	13	9	52	1.70
1220740--1220828	37	2.4	38	79	5	101	23	16	24	34	1.95
1220786--1220894	38	2.9	38	78	8	114	28	15	17	38	1.90
1226635--1226669	15	2.3	15	90	5	52	74	0	2	22	0.95
1227394--1227948	185	3.0	184	96	1	1013	52	11	7	28	1.63
1234871--1234911	21	2.0	20	86	13	57	9	4	7	78	1.10
1238605--1238721	62	1.9	62	92	0	198	28	3	17	50	1.62
1244445--1244528	28	3.0	28	98	0	159	46	15	0	38	1.46
1252344--1252369	13	2.0	13	100	0	52	30	7	15	46	1.74
1253265--1253291	2	13.5	2	100	0	54	48	0	0	51	1.00
1254359--1254404	20	2.3	20	84	0	56	36	4	45	13	1.63
1258930--1258975	20	2.3	20	84	0	56	36	4	45	13	1.63
1261881--1262244	183	2.0	185	95	1	651	48	7	9	34	1.63
1264103--1264153	24	2.2	24	85	3	68	39	9	0	50	1.35
1269771--1269895	20	5.7	20	70	18	97	39	12	16	32	1.86
1270734--1271250	28	17.5	28	82	9	412	23	17	29	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1270794--1271250	214	2.2	199	81	6	527	22	17	29	30	1.97
1272497--1272545	17	2.8	17	87	3	62	6	6	4	83	0.90
1278319--1278427	36	3.0	36	100	0	218	22	16	36	24	1.94
1286253--1286377	20	5.7	20	70	18	88	42	12	16	28	1.84
1291131--1291165	2	17.5	2	100	0	70	51	0	0	48	1.00
1291570--1291594	13	1.9	13	100	0	50	32	16	16	36	1.90
1292695--1292734	2	20.0	2	100	0	80	50	0	0	50	1.00
1293191--1293225	13	2.7	13	95	0	61	54	11	0	34	1.37
1293198--1293273	40	1.9	40	86	5	109	57	10	0	31	1.32
1293756--1293828	20	3.6	20	81	3	101	35	13	19	31	1.91
1293774--1293849	21	3.7	21	78	3	91	40	11	17	30	1.85
1293756--1293849	41	2.3	41	96	0	170	38	12	18	30	1.88
1293888--1293913	13	2.0	13	100	0	52	38	15	15	30	1.88
1297974--1298005	15	2.1	15	94	0	55	46	15	21	15	1.83
1300019--1300097	20	3.7	21	75	15	72	26	13	15	44	1.84
1300084--1300122	13	3.0	13	96	0	69	30	17	15	35	1.91
1302569--1302641	20	3.6	20	81	3	101	35	13	19	31	1.91
1302587--1302662	21	3.7	21	78	3	91	40	11	17	30	1.85
1302569--1302662	41	2.3	41	96	0	170	38	12	18	30	1.88
1302701--1302726	13	2.0	13	100	0	52	38	15	15	30	1.88
1304131--1304358	113	2.0	113	92	0	375	35	14	19	31	1.92
1305704--1305760	20	2.8	20	94	0	105	42	5	43	8	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1305871--1305941	27	2.6	27	88	6	99	46	23	7	22	1.76
1310471--1310534	27	2.3	27	92	7	103	46	20	7	25	1.77
1311213--1311242	15	2.1	14	93	6	51	30	0	0	70	0.88
1315090--1315369	81	3.5	75	76	10	240	37	11	23	27	1.89
1315098--1315471	161	2.4	155	80	10	384	36	9	24	29	1.87
1315076--1315527	79	5.7	78	71	12	287	35	10	25	28	1.89
1318009--1318068	20	3.0	20	81	16	63	38	13	16	31	1.87
1318134--1318175	21	2.0	21	90	4	68	38	14	2	45	1.58
1320622--1320649	2	14.0	2	100	0	56	50	0	0	50	1.00
1326961--1327044	32	2.5	33	81	14	102	57	1	4	36	1.28
1336871--1336943	33	2.2	33	95	0	128	31	13	10	43	1.79
1339540--1339692	78	2.0	78	82	5	186	49	5	4	41	1.46
1341313--1341339	2	13.5	2	100	0	54	51	0	0	48	1.00
1344417--1344456	21	2.0	20	90	5	62	57	10	5	27	1.52
1344992--1345031	2	20.0	2	100	0	80	50	0	0	50	1.00
1345439--1345481	20	2.2	20	91	0	68	27	4	51	16	1.64
1345558--1345628	27	2.6	27	88	6	99	46	23	7	22	1.76
1350017--1350062	20	2.3	20	92	0	74	28	4	52	15	1.61
1350139--1350209	27	2.6	28	90	2	108	47	23	5	22	1.72
1354630--1354780	73	2.1	73	94	0	266	34	19	13	33	1.90
1354619--1354746	36	3.5	36	65	10	98	36	19	12	31	1.89
1354666--1354780	37	3.1	37	64	7	99	33	18	13	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1354729--1354850	31	3.9	31	85	2	147	33	22	16	27	1.95
1354729--1354850	62	2.0	62	85	6	167	33	22	16	27	1.95
1355558--1355631	36	2.1	36	100	0	148	51	10	10	27	1.70
1358178--1358205	2	14.0	2	100	0	56	50	0	0	50	1.00
1367218--1367256	21	1.9	21	89	5	62	28	17	7	46	1.76
1374087--1374364	51	5.9	50	73	17	227	30	16	11	41	1.84
1374149--1374364	20	9.7	20	69	20	135	30	15	11	42	1.83
1374149--1374313	40	3.8	40	77	16	177	31	15	12	41	1.83
1374098--1374364	91	2.9	91	90	0	417	30	16	11	41	1.84
1380044--1380083	21	2.0	21	95	5	73	25	22	12	40	1.89
1383790--1383867	33	2.4	33	86	2	113	29	14	11	44	1.80
1383827--1384049	108	2.1	108	83	5	281	29	10	14	44	1.79
1386226--1386262	18	2.1	17	90	5	56	16	2	16	64	1.40
1386330--1386441	59	1.9	62	83	9	153	46	2	4	46	1.37
1389518--1389655	44	3.1	44	61	20	106	42	18	12	26	1.85
1389510--1389687	89	2.0	89	98	0	347	43	19	12	24	1.86
1389806--1389840	18	1.9	18	94	0	61	45	5	2	45	1.41
1393490--1393518	14	2.1	14	93	6	51	48	0	0	51	1.00
1394663--1394746	32	2.5	33	81	14	102	55	1	4	38	1.28
1400617--1400659	21	2.0	21	81	4	50	32	11	4	51	1.59
1402155--1402336	91	2.0	91	93	0	310	41	18	18	21	1.91
1407249--1407301	20	2.7	20	71	11	54	20	1	7	69	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1407328--1407449	39	3.3	36	68	16	104	17	6	11	64	1.46
1407333--1407475	75	1.9	74	90	4	225	18	5	9	65	1.41
1413057--1413124	32	2.1	33	83	2	84	29	11	11	47	1.76
1413095--1413298	108	1.9	108	84	4	277	32	9	13	45	1.75
1415615--1415851	76	3.1	77	88	6	333	48	5	4	42	1.44
1417428--1417454	2	13.5	2	100	0	54	51	0	0	48	1.00
1419823--1419881	23	2.6	22	81	10	66	71	1	0	27	0.96
1419823--1419877	21	2.5	21	85	5	65	70	1	0	27	0.97
1420507--1420563	20	2.8	20	89	5	80	35	14	10	40	1.80
1420442--1420611	91	1.9	91	92	0	286	30	16	10	43	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16