genome.fa.s382.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold382
Parameters: 2 7 7 80 10 50 1000
Length:  2572505

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  12  of  16  ( 1826 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1883539--1883564	13	2.0	13	100	0	52	30	15	15	38	1.88
1883519--1883585	33	2.0	33	88	0	98	25	14	16	43	1.86
1886086--1886256	51	3.3	51	79	4	198	29	26	11	32	1.92
1886239--1886320	28	2.9	28	82	7	96	24	31	17	26	1.97
1891517--1891554	20	1.9	20	89	10	60	76	5	5	13	1.13
1891888--1891942	17	3.3	16	80	7	65	1	18	0	80	0.81
1891886--1891943	24	2.7	21	82	17	75	1	17	0	81	0.78
1891907--1891944	20	1.9	20	94	0	67	5	21	0	73	1.02
1891904--1891957	24	2.2	24	77	6	56	7	22	0	70	1.12
1893167--1893768	32	18.8	32	95	0	1044	16	18	33	30	1.94
1893751--1894130	27	14.0	26	88	5	526	29	13	33	23	1.93
1893751--1894130	54	7.0	54	94	0	661	29	13	33	23	1.93
1901576--1901614	20	1.9	21	89	5	62	76	5	5	12	1.11
1901948--1902002	17	3.3	16	80	7	65	1	18	0	80	0.81
1901946--1902003	24	2.7	21	82	17	75	1	17	0	81	0.78
1901967--1902004	20	1.9	20	94	0	67	5	21	0	73	1.02
1903666--1903716	20	2.6	20	87	3	68	33	15	15	35	1.90
1903663--1903716	19	2.8	19	85	2	72	31	14	16	37	1.89
1904606--1904684	38	2.1	37	81	11	90	37	0	7	54	1.29
1905678--1905736	17	3.5	17	73	15	59	32	1	1	64	1.13
1913149--1913197	2	24.5	2	100	0	98	48	0	0	51	1.00
1914562--1914615	17	3.2	16	78	5	54	42	1	1	53	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1916177--1916228	13	3.6	13	77	22	59	26	1	0	71	0.97
1916177--1916229	14	3.6	14	79	16	63	26	1	0	71	0.96
1916520--1916617	49	2.0	49	100	0	196	38	14	12	34	1.83
1919162--1919191	2	15.0	2	100	0	60	50	0	0	50	1.00
1919565--1919592	2	14.0	2	100	0	56	50	0	0	50	1.00
1923289--1923483	95	2.1	95	94	0	336	23	26	7	42	1.81
1926732--1926773	6	7.0	6	81	10	50	4	16	0	78	0.91
1926732--1926777	15	3.1	15	79	17	51	4	17	0	78	0.91
1926733--1926773	18	2.3	18	87	8	57	4	17	0	78	0.93
1926702--1926776	24	3.1	24	71	21	66	6	18	2	72	1.19
1931317--1931373	20	2.8	20	91	0	96	42	10	19	28	1.84
1931288--1931425	71	1.9	71	94	0	240	42	11	19	26	1.86
1931388--1931425	20	1.9	20	94	0	67	39	13	18	28	1.88
1941720--1941848	52	2.5	52	94	0	231	27	19	18	34	1.95
1941720--1941868	52	2.9	51	89	4	185	28	18	18	33	1.95
1941926--1941996	32	2.2	32	89	0	115	36	15	12	35	1.86
1942156--1942193	10	4.0	10	80	13	53	60	2	7	28	1.38
1942747--1942851	29	3.6	29	77	13	117	18	19	30	32	1.95
1942757--1942863	56	1.9	57	84	5	146	19	16	32	30	1.94
1942852--1943019	34	4.8	36	87	2	211	36	11	31	19	1.88
1942852--1943019	71	2.4	71	85	4	218	36	11	31	19	1.88
1943036--1943247	30	7.4	29	76	9	220	17	13	34	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1942991--1943247	57	4.5	57	88	0	361	19	14	34	31	1.91
1944681--1944743	26	2.4	28	84	10	87	0	3	12	84	0.75
1944690--1944743	12	4.3	12	81	9	63	0	3	11	85	0.73
1958591--1958719	52	2.5	52	90	0	213	27	17	18	36	1.94
1958591--1958740	52	2.9	51	87	4	169	28	17	18	35	1.94
1959509--1959585	20	3.8	20	83	6	102	41	12	14	31	1.83
1959511--1959728	40	5.9	39	66	21	146	42	11	14	31	1.81
1959674--1959728	20	2.8	20	88	0	83	40	12	12	34	1.82
1959529--1959739	72	2.9	72	85	6	311	43	11	14	30	1.81
1960557--1961071	163	3.1	164	79	9	493	31	11	8	48	1.69
1960801--1961186	168	2.3	163	78	9	388	32	10	7	48	1.67
1961545--1961583	16	2.4	16	83	8	53	84	2	12	0	0.72
1961669--1961724	11	5.2	11	78	4	60	75	0	21	3	0.96
1962778--1962850	20	3.7	19	83	7	76	27	15	17	39	1.90
1962879--1962943	33	2.0	33	84	6	87	32	13	18	35	1.90
1968000--1968115	51	2.3	51	83	5	153	29	13	26	30	1.94
1967858--1968194	130	2.6	133	80	6	364	33	13	25	27	1.94
1968057--1968710	79	8.3	79	90	0	979	33	14	24	27	1.95
1969911--1970152	35	6.9	35	95	1	434	19	30	5	44	1.74
1970795--1970908	45	2.5	45	91	0	192	37	14	28	20	1.91
1970891--1971054	61	2.7	61	82	7	208	28	20	25	25	1.99
1971009--1971450	94	4.9	93	70	15	327	24	19	30	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1971107--1971355	55	4.5	55	84	8	333	21	20	30	27	1.98
1970950--1971241	149	1.9	153	86	6	423	25	19	28	26	1.99
1970891--1972386	264	5.7	264	74	17	1159	24	19	30	25	1.98
1971371--1971560	55	3.3	56	87	7	269	21	21	30	27	1.98
1971485--1972008	94	5.5	94	91	2	836	23	20	32	23	1.98
1971955--1972413	55	8.0	55	82	11	516	25	20	28	26	1.99
1972065--1972150	27	3.1	27	64	9	75	26	20	26	25	1.99
1972042--1972178	27	5.0	27	59	3	67	25	21	25	27	2.00
1971955--1972413	116	4.0	111	82	11	511	25	20	28	26	1.99
1971955--1972413	171	2.7	171	88	4	687	25	20	28	26	1.99
1973382--1973510	58	2.2	58	97	0	240	19	12	24	44	1.85
1978790--1978905	51	2.3	51	87	0	169	28	12	27	31	1.93
1978647--1978984	130	2.6	133	83	2	423	32	14	26	26	1.95
1978841--1979091	79	3.2	79	91	0	421	30	15	26	27	1.96
1979046--1979119	28	2.6	28	97	0	139	22	22	32	21	1.98
1978967--1979197	107	2.2	107	90	3	358	30	16	27	25	1.97
1978888--1979276	186	2.1	185	93	1	663	31	16	26	25	1.96
1978841--1979355	264	1.9	265	92	1	865	31	15	26	26	1.95
1979067--1979371	157	2.0	155	92	2	504	32	14	26	26	1.94
1979074--1979371	79	3.8	79	90	2	483	31	14	26	26	1.95
1980569--1980776	35	5.9	35	94	3	366	19	29	5	45	1.73
1980668--1980732	14	5.2	14	67	25	56	20	32	6	41	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1980737--1980763	14	1.9	14	100	0	54	22	33	7	37	1.82
1982965--1983006	20	2.2	20	87	8	61	28	2	21	47	1.63
1985046--1985115	22	3.5	20	76	18	56	41	1	30	27	1.65
1985064--1985116	20	2.7	21	77	19	60	47	0	26	26	1.53
1985661--1985687	13	2.1	13	100	0	54	29	14	14	40	1.86
1985737--1985801	33	2.0	33	84	6	87	32	13	18	35	1.90
1987025--1987613	153	3.8	153	78	8	500	25	16	18	39	1.91
1991453--1991512	24	2.5	24	88	0	84	28	23	6	41	1.79
1994335--1994579	122	2.0	122	100	0	490	23	21	6	48	1.73
2003477--2003589	25	4.5	25	89	0	154	39	16	30	13	1.87
2003992--2004042	25	2.0	25	100	0	102	49	15	27	7	1.72
2005585--2007502	156	12.3	157	81	5	1838	24	18	19	36	1.94
2005585--2007502	311	6.1	313	83	4	1979	24	18	19	36	1.94
2010835--2010885	20	2.5	20	87	0	66	35	15	15	33	1.90
2010871--2010899	13	2.2	13	100	0	58	31	17	13	37	1.89
2010991--2011015	13	1.9	13	100	0	50	32	16	16	36	1.90
2010971--2011038	33	2.1	33	91	2	111	35	16	14	33	1.89
2017188--2017226	13	3.0	13	92	0	69	30	20	15	33	1.94
2018951--2018988	19	2.0	19	100	0	76	42	0	36	21	1.53
2019018--2019057	21	1.9	21	84	0	53	32	2	35	30	1.71
2019566--2019622	20	2.8	20	83	0	69	38	14	15	31	1.87
2019608--2019636	13	2.2	13	100	0	58	31	17	13	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2019624--2019676	20	2.6	21	84	3	72	39	15	16	28	1.89
2019728--2019752	13	1.9	13	100	0	50	32	16	16	36	1.90
2019708--2019775	33	2.1	33	88	2	102	35	17	14	32	1.91
2023118--2024050	156	6.0	155	79	5	814	24	18	20	37	1.94
2023118--2023995	314	2.8	312	81	4	864	24	18	20	36	1.94
2027332--2027383	20	2.6	20	100	0	104	30	11	19	38	1.87
2027461--2027487	13	2.1	13	100	0	54	29	14	14	40	1.86
2027471--2027527	19	2.9	19	89	2	87	31	15	17	35	1.92
2027572--2027624	13	4.5	13	69	26	55	32	9	16	41	1.81
2027556--2027624	33	2.1	33	89	5	104	31	10	18	39	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16