genome.fa.s382.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold382
Parameters: 2 7 7 80 10 50 1000
Length:  2572505

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  4  of  16  ( 1826 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
492619--492653	18	1.9	18	94	0	61	40	22	11	25	1.88
491197--498802	884	8.7	885	93	2	12242	33	13	14	38	1.85
497024--497058	18	1.9	18	100	0	70	40	25	11	22	1.88
503925--504000	33	2.3	33	90	2	127	30	10	10	48	1.71
503962--504181	108	2.0	108	84	1	280	29	11	15	43	1.82
509971--510008	6	6.5	6	82	17	53	15	2	15	65	1.38
510087--510244	76	2.1	76	88	5	232	48	5	4	41	1.47
511070--511379	157	2.0	157	88	4	466	37	12	11	38	1.80
511494--511555	30	2.1	30	96	0	115	48	9	14	27	1.75
512041--512094	2	27.5	2	81	3	65	53	3	1	40	1.29
516535--516577	17	2.5	17	78	17	52	27	9	34	27	1.88
517005--517133	45	2.8	44	82	5	116	26	16	15	41	1.88
517048--517171	45	2.7	46	87	1	178	26	14	16	42	1.86
518752--518782	15	2.1	15	93	0	53	19	9	6	64	1.45
519392--519422	15	2.1	15	100	0	62	35	6	6	51	1.53
524398--524427	2	15.0	2	100	0	60	50	0	0	50	1.00
528308--528474	87	1.9	87	97	2	318	25	24	14	35	1.93
531152--531186	18	1.9	18	100	0	70	40	25	11	22	1.88
528553--534722	888	7.0	888	92	1	9914	33	13	14	38	1.85
532042--532076	18	1.9	18	100	0	70	40	25	11	22	1.88
528553--534722	890	7.0	885	92	1	9919	33	13	14	38	1.85
533822--533856	18	1.9	18	100	0	70	40	20	11	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
539823--539898	33	2.3	33	90	2	127	30	10	10	48	1.71
539860--540081	108	2.1	108	83	5	279	29	10	15	44	1.80
541801--541827	13	2.1	13	100	0	54	29	14	14	40	1.86
541782--541846	33	2.0	32	87	3	94	29	12	16	41	1.85
541813--541873	19	3.2	19	88	6	88	34	11	19	34	1.88
541813--541867	20	2.8	20	91	2	85	32	12	20	34	1.90
541913--541942	13	2.3	13	100	0	60	33	16	13	36	1.88
541896--541964	33	2.1	33	89	10	106	30	13	20	36	1.90
547962--547988	13	2.1	13	100	0	54	29	14	14	40	1.86
549467--549530	33	1.9	33	84	6	85	29	28	14	28	1.95
550511--550565	19	2.8	19	89	10	85	32	14	18	34	1.91
550511--550564	20	2.8	20	91	8	85	31	14	18	35	1.91
550593--550646	20	2.7	20	88	5	74	33	12	16	37	1.87
552700--552758	31	1.9	31	96	0	109	38	25	11	23	1.89
557367--557392	13	2.0	13	100	0	52	38	15	15	30	1.88
557348--557412	33	2.0	33	87	6	96	41	16	13	27	1.87
561459--561489	15	2.1	15	93	0	53	48	16	22	12	1.80
562959--562989	15	2.1	15	93	0	53	48	16	22	12	1.80
564459--564489	15	2.1	15	93	0	53	48	16	22	12	1.80
569152--569177	13	2.0	13	100	0	52	38	15	15	30	1.88
569133--569197	33	2.0	33	87	6	96	41	16	13	27	1.87
574580--574745	87	1.9	87	96	2	307	25	24	13	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
574824--579197	884	5.0	884	91	3	7005	34	13	14	38	1.85
576556--576590	18	1.9	18	100	0	70	40	25	11	22	1.88
577438--577474	18	2.1	18	95	5	67	40	18	13	27	1.88
584329--584404	33	2.3	33	90	2	127	30	10	10	48	1.71
584366--584587	108	2.1	108	82	3	268	28	10	16	43	1.82
588268--588338	20	3.5	20	92	0	115	32	7	11	49	1.65
590499--590536	6	6.5	6	81	6	51	15	5	15	63	1.48
591585--591898	156	2.0	157	94	1	551	36	10	13	39	1.78
592760--592811	19	2.7	20	87	6	79	42	15	13	28	1.85
593848--593970	47	2.6	47	83	6	126	32	10	21	35	1.87
594724--594877	46	3.3	46	80	5	143	25	12	20	41	1.88
597133--597196	33	2.0	32	87	9	94	40	12	15	31	1.85
597275--597317	23	2.0	22	90	9	70	37	9	6	46	1.63
597500--597547	20	2.4	20	85	0	60	35	18	8	37	1.81
597537--597561	13	1.9	13	100	0	50	36	8	16	40	1.77
597629--597653	13	1.9	13	100	0	50	36	16	16	32	1.90
597611--597674	33	2.0	32	87	9	94	39	15	15	29	1.89
603944--603981	13	2.9	13	92	0	58	39	18	13	28	1.88
609215--609420	32	6.4	32	100	0	412	31	15	12	40	1.85
613035--613091	21	2.8	21	86	10	82	29	15	10	43	1.80
615009--615053	20	2.2	20	96	0	81	24	15	22	37	1.93
621288--621317	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
622818--622944	65	2.0	65	81	6	150	41	10	17	30	1.82
624225--624266	2	21.0	2	100	0	84	50	0	0	50	1.00
626050--626214	85	1.9	86	95	1	296	24	24	15	35	1.94
627205--627356	74	2.1	74	82	7	184	19	4	7	69	1.30
628412--628459	23	2.0	23	88	4	69	37	14	6	41	1.71
628923--629014	28	3.4	28	80	11	129	20	42	1	35	1.60
628916--629014	52	1.9	52	97	0	189	22	39	1	37	1.61
634278--634434	20	7.8	20	71	18	112	26	15	15	41	1.88
634316--634345	13	2.3	13	100	0	60	30	16	13	40	1.87
635514--635568	28	1.9	29	85	3	76	36	21	23	18	1.95
635466--635650	79	2.4	78	82	2	210	31	17	28	22	1.96
635602--635673	28	2.6	28	88	0	99	23	19	34	22	1.96
635661--635883	105	2.1	103	82	3	259	32	12	26	29	1.92
635661--636047	51	7.4	51	73	12	246	31	12	26	29	1.93
635661--635883	52	4.3	51	81	4	239	32	12	26	29	1.92
635551--636052	264	1.9	263	90	2	801	30	13	27	28	1.94
635866--635941	27	2.8	28	89	2	109	21	21	34	23	1.97
638395--638447	20	2.7	20	81	0	61	45	16	13	24	1.83
641016--641182	51	3.3	51	85	3	237	31	25	9	33	1.88
641197--641313	51	2.3	52	83	4	166	31	26	9	32	1.88
641069--641322	130	1.9	131	91	3	415	29	25	9	34	1.88
641296--641372	28	2.7	29	86	4	113	23	32	20	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
641356--641473	51	2.3	51	86	0	173	27	26	13	32	1.94
641324--641661	130	2.6	129	75	6	306	28	24	12	34	1.92
653945--654002	1	58.0	1	75	0	53	87	6	5	0	0.65
653945--654002	10	5.8	10	88	8	82	87	6	5	0	0.65
653945--654008	11	5.7	11	80	10	60	85	6	7	0	0.73
653951--654008	20	2.9	19	85	7	71	86	6	6	0	0.72
655005--655337	55	6.0	54	90	4	452	26	28	21	23	1.99
655089--655176	26	3.3	26	67	14	79	26	31	20	21	1.98
655259--655437	93	1.9	91	84	4	234	24	30	18	26	1.98
655463--655599	42	3.1	45	77	13	158	18	26	12	42	1.86
655622--655725	41	2.6	39	76	10	104	22	24	9	44	1.82
656302--656389	20	4.8	20	77	18	91	27	15	14	42	1.87
656340--656369	13	2.3	13	100	0	60	30	16	13	40	1.87
656320--656389	33	2.1	33	97	0	131	28	18	12	40	1.88
656351--656409	20	2.9	21	85	7	77	32	15	10	42	1.80
664290--664360	32	2.2	32	92	0	115	21	39	11	28	1.87
665500--665546	16	3.1	16	79	17	55	70	10	14	4	1.31
666880--667687	28	28.0	27	83	7	623	29	29	18	23	1.97
667799--668026	48	4.8	48	94	0	393	20	28	16	34	1.94
670485--670512	4	7.0	4	100	0	56	25	0	0	75	0.81
672978--673055	33	2.4	33	86	4	113	29	11	12	46	1.77
680442--680523	28	2.9	28	83	7	96	25	17	32	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
680503--680674	52	3.3	51	81	5	202	32	11	25	30	1.91
680450--680833	211	1.8	211	88	4	596	30	12	27	29	1.93
683183--683249	33	2.0	33	88	0	98	43	16	14	25	1.86
683204--683229	13	2.0	13	100	0	52	38	15	15	30	1.88
683269--683336	19	3.9	18	76	23	83	38	14	11	35	1.83
683291--683315	13	1.9	13	100	0	50	32	16	16	36	1.90
683272--683334	32	2.0	32	96	0	117	36	15	12	34	1.86
683372--683448	21	3.7	21	85	3	102	32	16	15	35	1.91
684415--684489	20	3.8	20	80	3	80	40	13	13	33	1.83
685910--685953	23	2.0	24	82	13	58	54	2	2	40	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16