genome.fa.s72.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold72
Parameters: 2 7 7 80 10 50 1000
Length:  5928628

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   

This is table  3  of  39  ( 4596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
229677--230136	92	4.9	92	92	2	713	30	18	25	25	1.98
230143--230599	33	13.9	33	85	2	609	20	17	33	28	1.95
230695--230762	32	2.2	31	80	15	77	30	16	26	26	1.96
230670--231060	29	13.2	29	87	4	471	27	16	29	26	1.97
231042--231189	35	4.4	34	83	10	169	29	12	33	23	1.92
231051--231189	34	4.2	32	82	10	120	31	12	33	22	1.92
231167--231212	23	2.0	23	86	0	65	19	21	28	30	1.98
232606--232640	16	2.2	16	89	0	52	0	2	14	82	0.77
237661--237727	27	2.4	27	87	7	91	25	32	17	23	1.97
237713--237886	52	3.4	51	75	13	167	28	25	13	32	1.94
237866--237942	28	2.8	28	87	0	100	23	33	19	23	1.97
237544--237939	212	1.9	212	89	3	618	28	26	13	31	1.94
237604--237999	107	3.7	107	70	14	278	27	27	14	31	1.95
240141--240165	4	6.2	4	100	0	50	24	0	0	76	0.80
241049--241105	21	2.7	21	97	0	105	33	10	19	36	1.86
241161--241228	19	3.9	19	78	21	85	35	11	14	38	1.83
241182--241206	13	1.9	13	100	0	50	36	16	16	32	1.90
241163--241225	32	2.0	32	96	0	117	34	12	15	36	1.86
241268--241293	13	2.0	13	100	0	52	30	15	15	38	1.88
241248--241314	33	2.0	33	88	0	98	25	14	16	43	1.86
243765--243837	27	2.7	27	87	6	94	23	34	21	20	1.97
243820--243990	51	3.3	51	79	4	198	29	26	11	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
243973--244054	28	2.9	28	82	7	96	24	31	17	26	1.97
309295--309377	36	2.5	33	78	14	98	32	27	10	28	1.91
309308--309379	36	2.0	36	91	2	119	27	30	9	31	1.89
310560--310702	68	2.1	68	88	3	207	32	25	2	38	1.71
311301--311363	33	2.0	31	84	6	81	39	17	14	28	1.89
315312--315435	32	4.0	32	84	13	170	35	11	17	35	1.86
315329--315411	13	5.9	13	80	15	94	36	12	16	34	1.86
315486--315634	52	2.9	51	89	6	203	34	17	18	30	1.94
320746--320816	27	2.6	27	84	4	79	23	19	32	23	1.98
320804--320972	52	3.3	50	77	5	167	33	11	24	30	1.90
324085--324414	55	6.0	54	88	5	457	22	19	29	28	1.98
324241--324323	26	3.1	26	68	20	71	16	19	32	31	1.94
324085--324414	110	3.0	110	91	2	504	22	19	29	28	1.98
324159--324828	28	24.2	28	60	18	147	21	19	30	29	1.98
324267--324553	139	2.1	139	94	2	506	20	19	31	28	1.97
324219--324608	194	2.0	194	89	5	594	20	19	30	29	1.97
324413--324906	55	9.0	54	91	4	760	21	19	28	29	1.98
324490--324579	26	3.3	26	69	19	85	18	17	34	28	1.94
324157--324663	249	2.0	249	96	0	926	21	19	30	28	1.97
324108--324718	304	2.0	304	92	2	1032	21	19	29	28	1.98
331573--331606	17	2.0	17	88	0	50	5	26	17	50	1.69
338325--338439	59	1.9	59	83	0	149	29	19	26	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338458--338529	28	2.6	28	88	0	99	23	19	34	22	1.96
338384--338796	107	3.9	107	72	12	337	30	15	27	27	1.96
338551--338687	52	2.6	51	79	8	143	33	13	24	27	1.94
338409--338856	212	2.1	211	87	2	623	31	13	27	28	1.94
338673--338744	27	2.6	27	88	2	99	22	20	33	23	1.97
338733--338851	51	2.3	53	85	7	154	34	10	21	32	1.89
343733--343766	15	2.2	16	89	5	52	82	14	2	0	0.79
344684--344717	15	2.2	16	89	5	52	82	14	2	0	0.79
346111--346156	23	2.0	23	91	0	74	28	30	21	19	1.98
346134--346257	34	3.7	34	82	11	139	22	34	14	28	1.93
346134--346507	29	12.4	31	82	11	129	25	32	15	27	1.95
346134--346257	66	1.9	65	83	5	160	22	34	14	28	1.93
346236--346544	148	2.1	145	86	4	419	27	30	16	25	1.97
346271--346644	29	12.6	29	88	5	455	26	29	16	27	1.97
346276--346644	148	2.5	148	85	4	442	26	29	16	26	1.97
346707--347178	33	14.5	33	82	7	542	28	33	16	20	1.95
346709--347166	66	7.0	66	89	2	629	29	33	16	20	1.95
347184--347874	49	14.5	49	82	8	827	25	25	18	31	1.97
347166--347830	92	7.1	92	85	8	763	25	25	17	30	1.97
347784--347905	52	2.3	54	82	4	158	25	22	13	37	1.92
347260--348130	199	4.4	196	79	12	759	25	25	16	32	1.96
347959--348130	43	3.7	47	85	8	235	25	24	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349083--349183	32	3.1	32	95	1	175	34	10	17	36	1.85
349081--349176	13	5.7	18	71	28	86	33	11	17	37	1.86
349254--349382	52	2.5	52	93	0	222	35	18	17	27	1.94
355469--355502	15	2.2	16	89	5	52	82	14	2	0	0.79
356920--356988	34	2.1	32	84	7	86	23	28	15	31	1.95
356981--357142	35	4.7	35	75	15	126	22	32	12	32	1.91
357114--357505	29	13.2	29	87	4	498	27	30	16	26	1.96
357115--357505	118	3.3	117	87	4	502	27	30	16	26	1.96
357115--357505	147	2.6	147	88	3	543	27	30	16	26	1.96
357568--357968	33	12.2	33	84	7	530	27	33	17	21	1.96
357570--357963	66	6.0	66	91	0	603	27	32	18	21	1.96
357983--358429	49	9.4	48	81	9	537	24	24	18	32	1.97
357975--358429	92	4.8	92	93	2	730	24	24	18	32	1.97
358241--358684	49	8.6	55	76	13	282	24	23	16	34	1.95
357975--358492	92	5.4	99	90	3	603	24	24	17	33	1.96
358510--358684	92	1.9	92	93	0	305	26	23	17	32	1.97
359659--359747	13	5.9	13	72	27	70	32	13	17	35	1.89
359639--359771	32	4.1	32	96	0	230	33	12	18	36	1.87
359637--359766	19	7.8	17	70	29	95	32	12	17	37	1.87
359809--359833	13	1.9	13	100	0	50	32	16	16	36	1.90
359846--359970	52	2.4	52	90	0	205	36	20	17	25	1.94
363064--363729	123	5.5	123	86	5	861	25	28	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363064--363749	61	11.2	61	82	6	818	25	28	19	26	1.98
363773--363977	62	3.4	62	84	6	258	24	28	21	25	1.99
363552--363969	222	1.9	221	84	4	563	25	29	19	25	1.98
363958--364108	46	3.4	43	75	15	139	21	27	13	37	1.92
363958--364153	43	4.4	45	76	11	156	20	26	14	38	1.91
364089--364276	78	2.3	80	79	13	199	21	27	14	36	1.92
364824--364878	20	2.8	20	83	8	67	27	16	12	43	1.84
365010--365035	12	2.2	12	100	0	52	30	7	7	53	1.57
367087--367306	51	4.3	52	84	6	238	30	26	10	32	1.90
367087--367306	102	2.2	102	85	3	282	30	26	10	32	1.90
367290--367365	27	2.8	27	80	11	93	25	30	18	26	1.98
367348--367466	51	2.3	51	88	2	168	28	26	13	31	1.94
367318--367653	130	2.6	128	75	8	354	27	24	12	35	1.92
370178--370211	17	2.0	17	88	0	50	55	0	11	32	1.36
373120--373165	19	2.5	19	82	10	51	0	21	4	73	1.00
381815--381939	52	2.4	52	91	0	205	28	16	17	36	1.92
381815--381953	52	2.7	52	85	4	174	30	16	17	35	1.92
382869--383561	49	14.5	52	81	10	404	32	17	24	25	1.97
382929--383576	92	6.9	92	88	6	807	32	17	24	25	1.97
382929--383576	141	4.6	141	87	6	794	32	17	24	25	1.97
382929--383576	233	2.8	233	94	1	1118	32	17	24	25	1.97
383574--383774	97	2.1	96	89	6	316	18	17	37	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383577--383768	32	6.0	32	85	8	264	16	18	38	27	1.92
383781--384606	34	24.6	31	72	17	153	32	12	33	21	1.91
383781--383895	31	3.6	31	88	2	131	29	13	32	25	1.93
383801--384609	35	24.0	34	74	12	543	32	12	33	21	1.91
383835--384602	103	7.6	102	80	9	677	32	12	33	20	1.90
383827--384364	275	2.0	269	91	4	866	32	12	33	21	1.91
383844--384607	378	2.1	365	86	5	1070	32	12	33	21	1.91
383944--384609	69	9.9	63	72	14	374	31	12	34	21	1.91
384519--384578	27	2.2	27	87	0	84	30	13	36	20	1.90
384546--384735	95	2.0	96	85	3	258	30	15	31	22	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39