genome.fa.s72.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold72
Parameters: 2 7 7 80 10 50 1000
Length:  5928628

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   

This is table  7  of  39  ( 4596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
838415--838711	79	3.8	79	85	3	298	32	10	17	39	1.84
839176--839220	21	2.2	20	84	11	56	64	11	6	17	1.46
839587--839638	22	2.3	23	90	9	81	13	3	7	75	1.17
841733--841820	39	2.2	40	83	8	115	51	3	0	45	1.18
841750--841854	20	5.8	18	70	20	85	48	1	0	49	1.12
841904--841952	21	2.3	21	79	6	55	44	2	2	51	1.24
841929--842006	14	5.1	15	70	18	54	56	2	2	38	1.27
842404--842468	21	3.6	19	73	26	70	44	15	12	27	1.82
842422--842447	13	2.0	13	100	0	52	38	15	15	30	1.88
842404--842468	34	2.0	33	93	6	114	44	15	12	27	1.82
843459--843490	17	1.9	17	93	6	57	43	3	0	53	1.16
843650--843681	3	10.7	3	93	0	55	65	3	0	31	1.08
848018--848060	17	2.5	17	92	7	70	74	0	0	25	0.82
849131--849164	2	17.0	2	100	0	68	50	0	0	50	1.00
851502--851561	1	60.0	1	79	0	57	0	6	5	88	0.63
851503--851563	30	2.0	31	96	3	115	0	9	4	85	0.74
860218--860285	26	2.6	26	88	2	91	50	7	4	38	1.51
867764--868163	199	2.0	199	100	0	800	37	21	10	31	1.86
870686--870733	21	2.3	21	82	7	62	41	12	10	35	1.77
870777--870823	21	2.3	21	85	3	60	42	17	10	29	1.82
873991--874017	13	2.1	13	100	0	54	29	14	14	40	1.86
874001--874057	19	2.9	19	84	2	78	31	17	17	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
874086--874154	33	2.1	33	83	5	86	34	11	17	36	1.86
875606--875972	182	2.0	182	96	1	682	38	18	20	22	1.93
880327--880361	18	1.9	18	88	0	52	22	0	14	62	1.31
880503--880527	13	1.9	13	100	0	50	32	16	16	36	1.90
883043--883067	13	1.9	13	100	0	50	36	16	16	32	1.90
883052--883108	19	3.0	20	69	7	55	36	14	14	35	1.86
893806--893857	20	2.6	20	87	0	68	38	15	13	32	1.86
894823--894862	21	2.0	21	85	9	57	22	27	15	35	1.94
897625--897717	48	1.9	48	88	0	141	45	20	12	21	1.84
897879--898100	65	3.4	65	77	6	225	33	17	10	38	1.84
898758--898817	21	2.8	21	71	2	57	33	13	13	40	1.83
902212--902310	52	1.9	52	91	0	162	38	15	9	37	1.79
902783--902821	20	2.0	20	85	10	53	48	0	0	51	1.00
902846--902902	26	2.2	26	90	3	89	28	1	0	70	0.98
902858--902912	26	2.1	26	86	0	74	34	1	0	63	1.05
903737--903766	2	15.0	2	92	0	51	0	46	0	53	1.00
903936--903984	2	24.5	2	100	0	98	48	0	0	51	1.00
905459--905509	25	2.0	25	85	7	68	43	0	0	56	0.99
905709--905787	5	16.4	5	76	19	71	62	0	1	36	1.04
905695--905790	24	4.4	22	75	18	94	60	0	1	38	1.04
905695--905790	43	2.2	45	83	7	126	60	0	1	38	1.04
905707--905791	11	7.6	11	77	15	86	61	0	1	37	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
905803--905857	17	3.3	17	75	14	69	49	5	0	45	1.25
905795--905878	33	2.5	33	96	0	150	50	7	0	42	1.30
906596--906640	20	2.4	19	82	13	58	37	6	11	44	1.66
906920--906959	19	2.2	19	90	4	64	32	0	2	65	1.06
907438--907468	3	10.3	3	100	0	62	64	0	0	35	0.94
909087--909133	17	2.8	17	93	0	76	48	2	8	40	1.45
909695--909764	32	2.2	32	84	2	86	57	0	0	42	0.99
909710--909776	18	3.9	18	72	23	63	53	0	0	46	1.00
911066--911123	17	3.4	17	79	11	64	56	0	3	39	1.16
911162--911211	20	2.4	21	81	12	59	64	2	4	30	1.23
911148--911225	21	4.1	19	77	18	72	65	2	2	29	1.19
911959--911991	16	2.1	16	94	0	57	66	0	0	33	0.92
912056--912118	32	2.0	32	87	0	90	53	4	4	36	1.43
912623--912671	19	2.4	22	83	10	59	44	0	2	53	1.12
912619--912688	22	3.2	22	81	15	74	47	0	1	51	1.09
912926--912951	2	13.0	2	100	0	52	0	50	0	50	1.00
916319--916349	16	1.9	16	93	0	53	22	0	0	77	0.77
916425--916470	21	2.2	21	84	3	58	39	2	0	58	1.10
917229--917271	21	2.0	21	82	8	52	39	11	0	48	1.40
917526--917564	20	2.1	18	85	9	51	48	0	0	51	1.00
918024--918064	12	3.4	12	82	0	55	19	0	2	78	0.87
918304--918344	20	2.0	21	90	4	66	41	0	4	53	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
924504--924544	18	2.2	19	86	4	57	58	0	0	41	0.98
925455--925505	16	3.2	16	94	0	84	17	11	21	49	1.79
926608--926650	22	2.0	22	95	0	77	37	2	6	53	1.41
929544--929580	2	18.5	2	94	0	65	51	2	0	45	1.15
933152--933285	52	2.6	51	82	3	169	33	10	24	31	1.89
935642--935667	13	2.0	13	100	0	52	38	15	15	30	1.88
935654--935695	21	2.0	21	100	0	84	28	19	9	42	1.82
938774--938808	16	2.2	16	90	10	54	2	25	0	71	1.00
940079--940234	28	5.6	28	82	4	199	23	17	30	28	1.97
940080--940234	84	1.8	84	86	2	222	23	17	30	27	1.97
940787--940858	27	2.6	28	82	8	94	22	18	34	25	1.96
940843--941018	52	3.4	52	80	3	203	31	11	25	31	1.91
940841--941027	51	3.6	50	80	5	221	32	11	25	31	1.91
943136--943161	13	2.0	13	100	0	52	38	15	15	30	1.88
943581--944707	32	35.8	32	84	5	1230	21	18	28	32	1.97
943609--944695	317	3.4	316	90	3	1549	20	18	28	32	1.96
944702--945133	27	15.7	27	83	4	492	31	15	29	23	1.95
944702--945133	55	7.9	54	81	6	492	31	15	29	23	1.95
949379--949421	20	2.2	20	87	4	61	18	48	25	6	1.73
950408--950539	48	2.8	48	82	4	167	36	15	26	21	1.93
950663--950818	28	5.6	28	83	4	208	22	16	32	28	1.96
950664--950818	84	1.8	84	87	2	231	22	16	32	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
951426--951611	52	3.6	51	85	5	257	32	11	25	30	1.91
953724--953749	13	2.0	13	100	0	52	38	15	15	30	1.88
954178--954920	32	23.5	32	84	4	844	20	18	28	32	1.96
954954--955365	28	14.9	28	84	5	468	31	14	29	24	1.94
954954--955366	55	7.5	55	84	6	489	31	14	29	23	1.94
966636--966679	17	2.6	18	82	13	58	2	25	0	72	0.96
968667--968692	13	2.0	13	100	0	52	30	15	15	38	1.88
968647--968710	32	2.0	33	93	3	112	28	12	15	43	1.83
968647--968710	19	3.6	19	72	25	68	28	12	15	43	1.83
971258--971295	13	2.9	13	96	0	67	31	15	18	34	1.92
973376--973406	15	2.1	15	93	0	53	12	22	16	48	1.80
977452--977477	13	2.0	13	100	0	52	30	15	15	38	1.88
977432--977495	32	2.0	33	93	3	112	28	12	15	43	1.83
977432--977495	19	3.6	19	72	25	68	28	12	15	43	1.83
984320--984529	84	2.5	84	96	0	384	39	18	13	28	1.89
986768--986805	2	19.5	2	94	5	69	50	0	0	50	1.00
990843--990902	26	2.3	26	78	16	61	25	0	5	70	1.08
994382--994424	3	14.3	3	100	0	86	67	0	0	32	0.91
1003827--1003870	21	2.0	22	86	4	63	43	6	6	43	1.57
1005229--1005895	335	2.0	334	93	0	1147	37	18	17	27	1.93
1007842--1007984	71	2.0	71	100	0	286	37	9	12	40	1.76
1014698--1014772	28	2.6	29	78	18	84	40	1	0	58	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1014704--1014756	21	2.4	22	81	12	65	37	1	0	60	1.08
1014710--1014776	21	3.4	19	80	15	57	40	1	0	58	1.07
1014692--1014844	32	4.6	32	70	21	93	39	0	1	57	1.15
1014693--1014787	31	3.2	30	73	14	90	42	1	0	56	1.06
1014743--1014792	16	3.1	16	72	16	50	44	0	0	56	0.99
1014725--1014847	19	5.9	19	65	26	54	39	0	2	57	1.12
1016487--1016536	7	6.4	7	79	20	55	22	2	0	76	0.89
1016487--1016536	17	3.2	14	86	13	55	22	2	0	76	0.89
1020633--1020707	20	3.8	19	80	7	87	38	12	10	38	1.77
1027681--1027800	52	2.3	52	95	0	213	29	16	18	35	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39