Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold72
Parameters: 2 7 7 80 10 50 1000
Length:  5928628

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   

This is table  39  of  39  ( 4596 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5870894--5870951
16
3.6
16
79
11
64
51
15
5
27
1.64
5875958--5876001
18
2.4
18
88
0
70
52
0
27
20
1.47
5877651--5877687
16
2.3
16
100
0
74
37
0
32
29
1.58
5880255--5880499
68
3.6
68
81
3
260
25
14
18
40
1.89
5891616--5891670
21
2.5
21
77
13
58
45
0
0
54
0.99
5891626--5891667
21
2.0
20
90
9
66
42
0
0
57
0.99
5894645--5894735
43
2.1
42
78
15
98
51
0
0
48
1.00
5896053--5896121
11
6.6
11
70
20
51
59
2
0
37
1.12
5896827--5896876
13
3.6
14
77
15
50
18
4
2
76
1.04
5897868--5897975
54
2.0
54
100
0
216
25
12
9
51
1.70
5905639--5905675
2
18.5
2
94
0
65
48
0
0
51
1.00
5905961--5906004
23
1.9
23
86
9
63
43
2
0
54
1.12
5906036--5906111
17
4.5
17
78
18
79
47
0
0
52
1.00
5906039--5906109
16
4.2
18
72
20
62
46
0
0
53
1.00
5906735--5906776
18
2.4
18
84
4
59
66
0
0
33
0.92
5907070--5907127
19
3.0
19
69
20
57
31
0
1
67
1.01
5907911--5907944
7
5.1
7
86
13
54
73
0
0
26
0.83
5907911--5907944
12
2.6
13
86
13
52
73
0
0
26
0.83
5908493--5908569
40
1.9
40
91
0
127
46
7
6
38
1.59
5908911--5908956
16
2.6
18
86
10
60
39
0
0
60
0.97
5908919--5908959
21
2.0
21
85
9
57
36
0
0
63
0.95
5909507--5909535
9
3.3
9
90
9
51
89
0
0
10
0.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5909507--5909537
8
3.8
8
95
4
53
87
0
0
12
0.55
5909623--5909662
13
3.0
13
85
3
53
30
0
0
70
0.88
5910298--5910323
2
13.0
2
100
0
52
50
0
0
50
1.00
5919855--5919884
14
2.1
14
93
0
51
43
33
16
6
1.74
5919909--5919982
14
5.3
14
77
8
62
43
35
1
20
1.60
5919909--5920023
28
4.1
28
75
16
80
44
33
0
20
1.58
5919909--5920039
7
18.7
7
71
11
56
45
32
0
21
1.58
5920004--5920141
40
3.5
40
80
8
122
44
28
1
25
1.63
5920004--5920121
40
3.0
40
77
8
125
44
27
1
26
1.64
5920158--5920288
27
4.7
27
72
15
79
43
22
0
33
1.59
5920240--5920288
15
3.3
15
78
16
57
46
22
0
30
1.52
5920113--5920453
7
48.4
7
67
11
124
43
24
1
30
1.65
5920382--5920449
34
2.0
35
85
2
93
39
27
0
32
1.57
5920617--5920671
7
7.9
7
80
8
58
41
30
0
27
1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39

The End!