genome.fa.s72.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold72
Parameters: 2 7 7 80 10 50 1000
Length:  5928628

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   

This is table  4  of  39  ( 4596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384426--384740	61	5.0	63	77	14	199	30	14	33	21	1.94
384546--384740	32	6.2	31	80	10	184	31	14	31	22	1.94
385694--385746	27	2.0	26	85	10	72	0	13	7	79	0.93
386012--386037	13	2.0	13	100	0	52	7	7	7	76	1.15
385995--386055	31	2.0	29	84	12	79	4	4	14	75	1.14
392931--393055	52	2.4	52	91	0	205	28	16	17	36	1.92
392931--393073	52	2.8	52	86	4	182	30	16	17	35	1.92
393061--393088	13	2.2	13	100	0	56	39	17	14	28	1.89
393127--393167	20	2.0	20	90	9	66	53	9	9	26	1.65
394529--394553	13	1.9	13	100	0	50	36	16	16	32	1.90
394649--394778	52	2.5	52	91	3	201	33	19	16	31	1.94
400916--400972	19	2.9	19	86	2	78	31	12	17	38	1.87
401017--401047	13	2.4	13	94	0	53	35	16	12	35	1.87
401001--401067	33	2.0	33	88	5	100	32	13	17	35	1.89
407170--407221	20	2.6	20	96	0	95	30	17	13	38	1.88
407426--407569	77	1.9	77	94	0	252	34	22	3	40	1.71
414174--414231	19	3.0	19	84	2	71	24	12	20	43	1.86
414682--414709	13	2.2	13	100	0	56	28	14	17	39	1.89
414662--414728	33	2.0	33	85	5	91	31	14	11	41	1.83
420237--420261	13	1.9	13	100	0	50	36	16	16	32	1.90
420316--420378	19	3.6	19	74	24	75	39	17	11	31	1.85
420333--420357	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
420308--420376	32	2.2	32	94	0	120	39	17	10	33	1.83
421143--421409	49	5.6	49	79	6	314	31	19	24	24	1.98
421143--421420	92	2.9	95	85	6	375	32	19	24	24	1.98
421429--421866	28	15.4	28	85	5	558	18	17	31	33	1.94
421470--421870	114	3.5	114	89	3	585	18	17	31	32	1.95
421455--421874	86	4.9	86	89	2	580	18	17	31	32	1.94
423331--423370	15	2.6	16	84	4	55	2	2	10	85	0.80
437327--437351	13	1.9	13	100	0	50	32	16	16	36	1.90
442117--442414	79	3.8	76	78	9	250	29	24	12	33	1.92
442057--442414	156	2.3	156	78	8	374	29	24	12	33	1.92
442351--442465	51	2.3	51	86	5	155	29	22	13	34	1.92
442272--442672	128	3.1	127	79	7	486	29	24	12	32	1.93
442453--442510	28	2.0	30	86	6	84	31	25	13	29	1.94
442481--442595	51	2.3	51	85	0	149	32	26	11	29	1.91
442531--442955	79	5.4	77	80	9	407	29	24	12	32	1.93
442531--442934	158	2.6	157	83	4	478	29	24	13	32	1.93
449086--450558	119	12.1	121	82	8	1551	24	25	19	30	1.98
449086--450558	62	24.3	62	82	7	1704	24	25	19	30	1.98
450542--450939	84	4.7	84	77	8	353	21	25	11	40	1.87
450542--450934	42	9.3	41	78	7	281	21	26	11	40	1.87
451594--451654	27	2.3	27	85	0	95	18	31	14	36	1.91
451661--451755	29	3.3	28	77	2	100	34	30	16	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451655--451729	28	2.7	29	83	4	82	33	30	14	21	1.93
451764--452562	49	17.2	49	74	13	634	25	26	17	30	1.97
451772--452456	87	7.5	92	90	2	746	26	27	17	29	1.97
452161--452396	39	5.6	39	71	16	175	26	27	19	26	1.99
458767--458865	51	2.0	51	93	2	173	34	23	5	37	1.77
458800--459024	79	2.8	78	83	9	294	30	23	11	34	1.90
458877--459150	130	2.1	130	85	7	364	30	23	13	32	1.93
458956--459074	51	2.3	51	81	8	136	30	24	14	31	1.94
459007--459344	78	4.3	78	85	7	438	27	24	14	33	1.94
458767--459228	208	2.2	208	84	6	582	30	23	11	34	1.90
459007--459344	156	2.2	157	87	7	483	27	24	14	33	1.94
460454--460625	79	2.2	79	82	5	204	34	14	25	26	1.94
460601--460728	51	2.5	50	83	5	166	32	11	27	28	1.92
462796--462833	20	1.9	20	100	0	76	47	5	18	28	1.70
463451--463641	42	4.6	42	85	0	213	37	15	24	22	1.93
463617--464136	61	8.5	61	81	4	568	30	19	24	25	1.98
463624--464136	123	4.2	122	82	4	563	29	19	24	25	1.98
463622--464136	184	2.8	181	82	5	642	29	19	24	25	1.99
465122--465169	1	48.0	1	82	0	51	4	0	6	89	0.58
465110--465155	21	2.2	21	84	7	58	4	6	2	86	0.75
465122--465169	21	2.3	21	88	0	69	4	0	6	89	0.58
475414--475452	4	9.8	4	94	0	69	74	0	2	23	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477469--477650	78	2.3	79	82	2	215	35	13	24	26	1.92
477582--477751	51	3.3	51	88	1	241	30	10	30	30	1.90
477687--477917	79	2.9	77	78	4	266	31	11	27	29	1.91
477686--477937	78	3.2	77	77	8	260	29	12	28	29	1.93
477888--477944	27	2.1	27	86	0	78	26	19	29	24	1.98
480316--480409	30	3.2	29	87	4	134	37	14	20	27	1.92
484772--484847	40	1.9	40	86	0	107	23	14	6	55	1.63
490887--491176	149	1.9	149	86	2	404	34	17	19	27	1.95
492724--492848	62	2.0	62	98	0	241	41	12	16	30	1.84
492916--492940	13	1.9	13	100	0	50	32	20	16	32	1.94
492896--492960	32	2.0	33	87	3	96	27	16	15	40	1.89
494632--494666	3	11.7	3	100	0	70	34	0	34	31	1.58
495094--495135	15	2.8	16	78	10	52	52	0	16	30	1.44
501028--501076	26	2.0	25	84	8	64	24	12	16	46	1.81
503899--503953	20	2.8	20	88	0	83	40	14	12	32	1.84
503849--504035	71	2.6	71	91	1	286	40	13	15	30	1.86
503968--504024	20	2.8	20	83	0	78	40	15	12	31	1.85
504936--505020	32	2.7	30	85	5	116	28	20	24	27	1.99
504989--505989	28	35.5	28	85	5	1241	21	17	30	30	1.96
507068--507266	79	2.5	79	84	1	229	30	17	27	24	1.97
507281--507631	51	6.7	52	71	12	216	31	11	27	30	1.91
507280--507500	51	4.3	51	84	2	237	31	11	27	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507485--507559	28	2.7	27	83	4	78	24	18	33	24	1.97
507281--507632	52	6.7	51	71	8	215	31	11	27	30	1.91
509936--509986	19	2.6	18	82	14	57	31	15	13	39	1.87
511443--511503	13	4.8	12	80	9	68	1	1	11	85	0.75
511443--511503	9	6.7	9	80	14	56	1	1	11	85	0.75
511443--511505	25	2.4	25	84	5	72	1	1	12	84	0.78
513718--513747	15	1.9	16	93	6	53	26	33	30	10	1.89
517019--517104	19	4.7	19	68	20	67	39	15	9	36	1.79
517006--517083	32	2.4	32	91	0	120	39	15	10	34	1.81
526181--526377	20	8.8	20	67	22	79	40	11	15	31	1.84
526166--526457	71	4.1	71	92	1	471	41	11	16	30	1.83
527967--528014	22	2.2	23	85	10	66	45	6	8	39	1.59
528110--528175	33	2.0	33	84	0	87	33	13	13	39	1.84
528203--528240	13	2.9	13	96	0	67	31	15	18	34	1.92
529145--529171	12	2.2	12	100	0	54	66	11	22	0	1.22
529224--529258	11	3.1	11	88	8	52	2	20	0	77	0.90
531429--531478	13	4.0	13	75	15	52	2	18	4	76	1.04
533451--533476	13	2.0	13	100	0	52	38	15	15	30	1.88
533433--533496	32	2.0	33	90	3	103	42	15	14	28	1.86
539794--539839	21	2.2	20	81	11	58	32	19	4	43	1.71
542252--542277	13	2.0	13	100	0	52	38	15	15	30	1.88
542234--542297	32	2.0	33	90	3	103	42	15	14	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544559--544584	13	2.0	13	100	0	52	38	15	15	30	1.88
544537--544604	33	2.1	32	91	2	109	32	13	19	35	1.90
544636--544688	20	2.6	21	84	3	72	28	16	15	39	1.89
544676--544700	13	1.9	13	100	0	50	36	16	16	32	1.90
546672--546721	20	2.3	21	80	13	57	6	24	48	22	1.73
546985--547025	22	2.0	21	86	13	59	41	4	21	31	1.74
547370--547403	8	4.2	8	100	0	68	61	23	0	14	1.33
551086--551111	13	2.0	13	100	0	52	38	15	15	30	1.88
551064--551131	33	2.1	33	88	2	102	32	11	19	36	1.88
551164--551205	21	2.0	21	100	0	84	28	19	9	42	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39